EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000002716 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 8261 bases
Position: chrgroupX:3034628-3042888
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000003553	zf-C2H2	PF00096.26	2e-17	1	3
ENSGACP00000003553	zf-C2H2	PF00096.26	2e-17	2	3
ENSGACP00000003553	zf-C2H2	PF00096.26	2e-17	3	3
ENSGACP00000003553	zf-met	PF12874.7	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000003565	-	2118	-	ENSGACP00000003553	706 (aa)	-	G3NE02

Gene Model

Click here to download ENSGACG00000002716's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000002716's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000002716	prdm1b	51	33.594	ENSGACG00000020205	PRDM15	59	33.594

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000002716	prdm1b	54	75.000	ENSAPOG00000022084	prdm1b	85	73.153	Acanthochromis_polyacanthus
ENSGACG00000002716	prdm1b	58	56.098	ENSAPOG00000014135	-	52	56.098	Acanthochromis_polyacanthus
ENSGACG00000002716	prdm1b	61	56.707	ENSACIG00000009747	-	54	56.707	Amphilophus_citrinellus
ENSGACG00000002716	prdm1b	85	69.243	ENSACIG00000014426	prdm1b	92	69.522	Amphilophus_citrinellus
ENSGACG00000002716	prdm1b	86	62.052	ENSAOCG00000002230	prdm1b	95	67.049	Amphiprion_ocellaris
ENSGACG00000002716	prdm1b	99	69.688	ENSAPEG00000019826	prdm1b	94	69.676	Amphiprion_percula
ENSGACG00000002716	prdm1b	86	72.340	ENSATEG00000006924	prdm1b	92	72.995	Anabas_testudineus
ENSGACG00000002716	prdm1b	58	54.878	ENSATEG00000014034	-	52	54.878	Anabas_testudineus
ENSGACG00000002716	prdm1b	67	55.152	ENSATEG00000021017	prdm1a	73	54.802	Anabas_testudineus
ENSGACG00000002716	prdm1b	87	71.173	ENSACLG00000005487	prdm1b	89	71.173	Astatotilapia_calliptera
ENSGACG00000002716	prdm1b	56	60.000	ENSCSEG00000009707	prdm1a	75	52.247	Cynoglossus_semilaevis
ENSGACG00000002716	prdm1b	99	69.058	ENSCVAG00000016746	prdm1b	93	69.058	Cyprinodon_variegatus
ENSGACG00000002716	prdm1b	60	55.488	ENSCVAG00000019081	prdm1a	52	60.870	Cyprinodon_variegatus
ENSGACG00000002716	prdm1b	86	68.576	ENSFHEG00000019848	prdm1b	91	68.412	Fundulus_heteroclitus
ENSGACG00000002716	prdm1b	55	54.310	ENSGAFG00000013012	-	51	54.310	Gambusia_affinis
ENSGACG00000002716	prdm1b	99	68.480	ENSGAFG00000016191	prdm1b	91	68.977	Gambusia_affinis
ENSGACG00000002716	prdm1b	86	71.475	ENSHBUG00000001475	prdm1b	94	71.475	Haplochromis_burtoni
ENSGACG00000002716	prdm1b	86	66.993	ENSHCOG00000003617	prdm1b	91	66.340	Hippocampus_comes
ENSGACG00000002716	prdm1b	98	52.684	ENSIPUG00000013740	prdm1b	94	52.192	Ictalurus_punctatus
ENSGACG00000002716	prdm1b	60	55.849	ENSKMAG00000017597	prdm1a	78	54.545	Kryptolebias_marmoratus
ENSGACG00000002716	prdm1b	86	65.466	ENSKMAG00000011218	prdm1b	91	65.253	Kryptolebias_marmoratus
ENSGACG00000002716	prdm1b	100	75.562	ENSLBEG00000020955	prdm1b	93	75.421	Labrus_bergylta
ENSGACG00000002716	prdm1b	99	53.306	ENSLOCG00000004978	prdm1b	95	51.609	Lepisosteus_oculatus
ENSGACG00000002716	prdm1b	87	69.870	ENSMZEG00005026361	prdm1b	87	69.870	Maylandia_zebra
ENSGACG00000002716	prdm1b	86	73.813	ENSMMOG00000013458	prdm1b	94	73.650	Mola_mola
ENSGACG00000002716	prdm1b	59	55.488	ENSMALG00000000462	-	54	55.488	Monopterus_albus
ENSGACG00000002716	prdm1b	86	69.494	ENSMALG00000011410	prdm1b	94	67.752	Monopterus_albus
ENSGACG00000002716	prdm1b	52	60.930	ENSONIG00000014709	-	53	55.967	Oreochromis_niloticus
ENSGACG00000002716	prdm1b	99	68.114	ENSONIG00000013583	prdm1b	100	66.893	Oreochromis_niloticus
ENSGACG00000002716	prdm1b	85	64.860	ENSORLG00000010025	prdm1b	93	64.860	Oryzias_latipes
ENSGACG00000002716	prdm1b	85	64.368	ENSORLG00015009022	prdm1b	92	64.415	Oryzias_latipes_hsok
ENSGACG00000002716	prdm1b	76	71.176	ENSPKIG00000022335	prdm1b	79	72.050	Paramormyrops_kingsleyae
ENSGACG00000002716	prdm1b	95	66.183	ENSPFOG00000003103	prdm1b	100	65.167	Poecilia_formosa
ENSGACG00000002716	prdm1b	86	69.608	ENSPLAG00000018491	prdm1b	91	69.444	Poecilia_latipinna
ENSGACG00000002716	prdm1b	86	69.935	ENSPMEG00000007869	prdm1b	91	69.771	Poecilia_mexicana
ENSGACG00000002716	prdm1b	100	69.136	ENSPREG00000011327	prdm1b	91	70.098	Poecilia_reticulata
ENSGACG00000002716	prdm1b	100	41.613	ENSPVAG00000011732	PRDM1	94	40.814	Pteropus_vampyrus
ENSGACG00000002716	prdm1b	98	41.746	ENSPNAG00000028442	prdm1a	89	42.120	Pygocentrus_nattereri
ENSGACG00000002716	prdm1b	99	57.368	ENSSFOG00015021896	prdm1b	92	56.938	Scleropages_formosus
ENSGACG00000002716	prdm1b	100	72.676	ENSSMAG00000020467	prdm1b	81	86.188	Scophthalmus_maximus
ENSGACG00000002716	prdm1b	64	51.636	ENSSMAG00000017518	-	58	51.636	Scophthalmus_maximus
ENSGACG00000002716	prdm1b	86	74.468	ENSSDUG00000020610	prdm1b	91	74.468	Seriola_dumerili
ENSGACG00000002716	prdm1b	63	53.962	ENSSDUG00000000524	-	53	56.098	Seriola_dumerili
ENSGACG00000002716	prdm1b	59	55.488	ENSSLDG00000001957	-	53	55.488	Seriola_lalandi_dorsalis
ENSGACG00000002716	prdm1b	100	76.620	ENSSLDG00000021973	prdm1b	93	76.620	Seriola_lalandi_dorsalis
ENSGACG00000002716	prdm1b	59	55.078	ENSSPAG00000009830	-	53	55.078	Stegastes_partitus
ENSGACG00000002716	prdm1b	86	70.492	ENSSPAG00000000803	prdm1b	97	69.565	Stegastes_partitus
ENSGACG00000002716	prdm1b	100	70.282	ENSXCOG00000018920	prdm1b	95	70.141	Xiphophorus_couchianus
ENSGACG00000002716	prdm1b	100	68.846	ENSXMAG00000016765	prdm1b	92	69.421	Xiphophorus_maculatus