EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000002792 (Gene tree)
Gene ID: -
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: poly(A) binding protein%2C cytoplasmic 1-like
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 6328 bases
Position: chrgroupXII:650653-656980
Accession: ZDB-GENE-030131-5836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000003653	PABP	PF00658.18	1.9e-29	1	1
ENSGACP00000003653	RRM_5	PF13893.6	3.3e-09	1	2
ENSGACP00000003653	RRM_5	PF13893.6	3.3e-09	2	2
ENSGACP00000003653	RRM_1	PF00076.22	2.2e-89	1	4
ENSGACP00000003653	RRM_1	PF00076.22	2.2e-89	2	4
ENSGACP00000003653	RRM_1	PF00076.22	2.2e-89	3	4
ENSGACP00000003653	RRM_1	PF00076.22	2.2e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000003665	-	1863	-	ENSGACP00000003653	621 (aa)	-	G3NEA2

Gene Model

Click here to download ENSGACG00000002792's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000002792's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000002792	pabpc1l	60	45.333	ENSGACG00000002797	rbm39b	50	45.333
ENSGACG00000002792	pabpc1l	50	34.884	ENSGACG00000011707	celf3b	64	34.884
ENSGACG00000002792	pabpc1l	99	66.507	ENSGACG00000007179	pabpc4	97	66.986
ENSGACG00000002792	pabpc1l	58	34.667	ENSGACG00000009462	rbm19	59	38.158
ENSGACG00000002792	pabpc1l	57	32.044	ENSGACG00000008970	ncl	56	32.044
ENSGACG00000002792	pabpc1l	100	67.341	ENSGACG00000003771	pabpc1b	98	67.652
ENSGACG00000002792	pabpc1l	100	68.730	ENSGACG00000003572	pabpc1a	98	68.730
ENSGACG00000002792	pabpc1l	60	36.842	ENSGACG00000009332	rbms2b	50	36.842
ENSGACG00000002792	pabpc1l	58	30.120	ENSGACG00000013294	-	80	30.120
ENSGACG00000002792	pabpc1l	58	33.766	ENSGACG00000013329	-	88	31.868

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000002792	pabpc1l	99	67.308	ENSG00000101104	PABPC1L	98	76.235	Homo_sapiens
ENSGACG00000002792	pabpc1l	99	81.701	ENSAPOG00000010842	pabpc1l	99	81.701	Acanthochromis_polyacanthus
ENSGACG00000002792	pabpc1l	99	63.190	ENSAMEG00000004099	PABPC1L	100	62.634	Ailuropoda_melanoleuca
ENSGACG00000002792	pabpc1l	99	91.566	ENSACIG00000021004	-	99	91.566	Amphilophus_citrinellus
ENSGACG00000002792	pabpc1l	100	82.137	ENSAOCG00000006167	-	99	82.137	Amphiprion_ocellaris
ENSGACG00000002792	pabpc1l	100	81.571	ENSAPEG00000010558	-	99	88.532	Amphiprion_percula
ENSGACG00000002792	pabpc1l	100	86.284	ENSATEG00000007428	pabpc1l	99	86.443	Anabas_testudineus
ENSGACG00000002792	pabpc1l	99	69.565	ENSAPLG00000008415	PABPC1L	99	69.537	Anas_platyrhynchos
ENSGACG00000002792	pabpc1l	100	72.742	ENSACAG00000011841	PABPC1L	98	72.742	Anolis_carolinensis
ENSGACG00000002792	pabpc1l	99	67.520	ENSANAG00000026826	PABPC1L	99	67.520	Aotus_nancymaae
ENSGACG00000002792	pabpc1l	100	87.061	ENSACLG00000024791	pabpc1l	99	87.061	Astatotilapia_calliptera
ENSGACG00000002792	pabpc1l	100	78.309	ENSAMXG00000013552	pabpc1l	99	78.309	Astyanax_mexicanus
ENSGACG00000002792	pabpc1l	69	57.468	ENSBTAG00000016849	PABPC1L	94	57.468	Bos_taurus
ENSGACG00000002792	pabpc1l	62	88.095	ENSBTAG00000055300	-	100	88.095	Bos_taurus
ENSGACG00000002792	pabpc1l	99	67.680	ENSCJAG00000017628	PABPC1L	99	67.680	Callithrix_jacchus
ENSGACG00000002792	pabpc1l	59	79.310	ENSCJAG00000038506	-	100	79.310	Callithrix_jacchus
ENSGACG00000002792	pabpc1l	99	62.346	ENSCAFG00000009573	PABPC1L	100	62.346	Canis_familiaris
ENSGACG00000002792	pabpc1l	100	66.720	ENSCAFG00020013828	PABPC1L	99	66.720	Canis_lupus_dingo
ENSGACG00000002792	pabpc1l	98	66.069	ENSCHIG00000025759	PABPC1L	91	66.069	Capra_hircus
ENSGACG00000002792	pabpc1l	99	66.667	ENSTSYG00000006645	PABPC1L	98	66.667	Carlito_syrichta
ENSGACG00000002792	pabpc1l	99	61.191	ENSCAPG00000014519	PABPC1L	99	61.191	Cavia_aperea
ENSGACG00000002792	pabpc1l	99	63.578	ENSCPOG00000013633	PABPC1L	99	63.578	Cavia_porcellus
ENSGACG00000002792	pabpc1l	99	66.826	ENSCCAG00000023338	PABPC1L	99	67.464	Cebus_capucinus
ENSGACG00000002792	pabpc1l	99	67.145	ENSCATG00000034065	PABPC1L	99	67.624	Cercocebus_atys
ENSGACG00000002792	pabpc1l	99	62.600	ENSCLAG00000005298	PABPC1L	99	63.462	Chinchilla_lanigera
ENSGACG00000002792	pabpc1l	99	66.826	ENSCSAG00000014242	PABPC1L	99	67.305	Chlorocebus_sabaeus
ENSGACG00000002792	pabpc1l	55	83.206	ENSCPBG00000007810	-	91	83.206	Chrysemys_picta_bellii
ENSGACG00000002792	pabpc1l	71	80.045	ENSCPBG00000017755	-	99	80.045	Chrysemys_picta_bellii
ENSGACG00000002792	pabpc1l	80	60.684	ENSCING00000002796	-	97	50.099	Ciona_intestinalis
ENSGACG00000002792	pabpc1l	99	58.852	ENSCSAVG00000004246	-	89	70.861	Ciona_savignyi
ENSGACG00000002792	pabpc1l	99	56.740	ENSCSAVG00000003102	-	100	83.221	Ciona_savignyi
ENSGACG00000002792	pabpc1l	99	64.409	ENSCANG00000037530	PABPC1L	99	64.567	Colobus_angolensis_palliatus
ENSGACG00000002792	pabpc1l	99	60.890	ENSCGRG00001021938	Pabpc1l	98	60.890	Cricetulus_griseus_chok1gshd
ENSGACG00000002792	pabpc1l	99	60.890	ENSCGRG00000007946	Pabpc1l	98	60.890	Cricetulus_griseus_crigri
ENSGACG00000002792	pabpc1l	99	87.671	ENSCSEG00000021295	pabpc1l	99	87.671	Cynoglossus_semilaevis
ENSGACG00000002792	pabpc1l	100	85.370	ENSCVAG00000015943	-	99	96.947	Cyprinodon_variegatus
ENSGACG00000002792	pabpc1l	100	79.266	ENSDARG00000002597	pabpc1l	88	95.385	Danio_rerio
ENSGACG00000002792	pabpc1l	99	67.360	ENSDNOG00000048450	PABPC1L	99	67.360	Dasypus_novemcinctus
ENSGACG00000002792	pabpc1l	99	64.172	ENSDORG00000001067	Pabpc1l	99	64.172	Dipodomys_ordii
ENSGACG00000002792	pabpc1l	96	76.423	ENSETEG00000009969	PABPC1L	72	76.423	Echinops_telfairi
ENSGACG00000002792	pabpc1l	62	85.714	ENSEASG00005023408	-	100	85.714	Equus_asinus_asinus
ENSGACG00000002792	pabpc1l	51	74.051	ENSEASG00005023407	-	64	74.051	Equus_asinus_asinus
ENSGACG00000002792	pabpc1l	66	66.812	ENSECAG00000040139	-	82	66.812	Equus_caballus
ENSGACG00000002792	pabpc1l	99	65.120	ENSEEUG00000005978	PABPC1L	99	65.120	Erinaceus_europaeus
ENSGACG00000002792	pabpc1l	100	80.952	ENSELUG00000001811	pabpc1l	99	80.952	Esox_lucius
ENSGACG00000002792	pabpc1l	100	67.516	ENSFCAG00000011692	PABPC1L	99	67.516	Felis_catus
ENSGACG00000002792	pabpc1l	86	71.800	ENSFALG00000005372	PABPC1L	97	68.512	Ficedula_albicollis
ENSGACG00000002792	pabpc1l	99	62.600	ENSFDAG00000008291	PABPC1L	99	62.761	Fukomys_damarensis
ENSGACG00000002792	pabpc1l	100	85.507	ENSFHEG00000003398	pabpc1l	99	85.507	Fundulus_heteroclitus
ENSGACG00000002792	pabpc1l	100	82.212	ENSGMOG00000004437	pabpc1l	99	82.022	Gadus_morhua
ENSGACG00000002792	pabpc1l	83	77.404	ENSGALG00000004123	PABPC1L	98	80.340	Gallus_gallus
ENSGACG00000002792	pabpc1l	100	81.679	ENSGAFG00000021057	pabpc1l	99	81.679	Gambusia_affinis
ENSGACG00000002792	pabpc1l	100	73.291	ENSGAGG00000000589	PABPC1L	96	79.080	Gopherus_agassizii
ENSGACG00000002792	pabpc1l	99	66.667	ENSGGOG00000004584	PABPC1L	99	67.468	Gorilla_gorilla
ENSGACG00000002792	pabpc1l	100	86.741	ENSHBUG00000006134	pabpc1l	99	86.741	Haplochromis_burtoni
ENSGACG00000002792	pabpc1l	99	64.160	ENSHGLG00000008434	PABPC1L	99	64.320	Heterocephalus_glaber_female
ENSGACG00000002792	pabpc1l	58	85.393	ENSHGLG00100019506	-	100	85.393	Heterocephalus_glaber_male
ENSGACG00000002792	pabpc1l	99	64.160	ENSHGLG00100012151	PABPC1L	99	64.320	Heterocephalus_glaber_male
ENSGACG00000002792	pabpc1l	99	84.027	ENSHCOG00000009270	pabpc1l	99	84.027	Hippocampus_comes
ENSGACG00000002792	pabpc1l	59	62.644	ENSIPUG00000006760	-	88	62.644	Ictalurus_punctatus
ENSGACG00000002792	pabpc1l	59	62.644	ENSIPUG00000006780	-	85	62.644	Ictalurus_punctatus
ENSGACG00000002792	pabpc1l	100	76.874	ENSIPUG00000012602	pabpc1l	99	76.874	Ictalurus_punctatus
ENSGACG00000002792	pabpc1l	99	66.032	ENSSTOG00000003739	PABPC1L	99	66.032	Ictidomys_tridecemlineatus
ENSGACG00000002792	pabpc1l	99	52.043	ENSJJAG00000022406	Pabpc1l	99	50.239	Jaculus_jaculus
ENSGACG00000002792	pabpc1l	99	83.628	ENSKMAG00000016847	pabpc1l	99	83.628	Kryptolebias_marmoratus
ENSGACG00000002792	pabpc1l	100	88.978	ENSLBEG00000010084	pabpc1l	99	88.978	Labrus_bergylta
ENSGACG00000002792	pabpc1l	99	72.013	ENSLACG00000005762	PABPC1L	95	76.099	Latimeria_chalumnae
ENSGACG00000002792	pabpc1l	100	79.936	ENSLOCG00000007519	pabpc1l	98	79.936	Lepisosteus_oculatus
ENSGACG00000002792	pabpc1l	99	66.667	ENSLAFG00000003553	PABPC1L	100	66.667	Loxodonta_africana
ENSGACG00000002792	pabpc1l	99	67.360	ENSMFAG00000040365	PABPC1L	99	67.840	Macaca_fascicularis
ENSGACG00000002792	pabpc1l	99	66.400	ENSMNEG00000032298	PABPC1L	99	66.880	Macaca_nemestrina
ENSGACG00000002792	pabpc1l	99	67.145	ENSMLEG00000043139	PABPC1L	99	67.624	Mandrillus_leucophaeus
ENSGACG00000002792	pabpc1l	97	86.678	ENSMAMG00000011854	pabpc1l	97	86.678	Mastacembelus_armatus
ENSGACG00000002792	pabpc1l	100	87.061	ENSMZEG00005023713	pabpc1l	99	87.061	Maylandia_zebra
ENSGACG00000002792	pabpc1l	100	70.860	ENSMGAG00000003674	PABPC1L	99	70.860	Meleagris_gallopavo
ENSGACG00000002792	pabpc1l	99	60.287	ENSMOCG00000013186	Pabpc1l	98	60.287	Microtus_ochrogaster
ENSGACG00000002792	pabpc1l	100	85.280	ENSMMOG00000020574	-	90	96.154	Mola_mola
ENSGACG00000002792	pabpc1l	97	69.318	ENSMODG00000016198	PABPC1L	99	69.318	Monodelphis_domestica
ENSGACG00000002792	pabpc1l	97	86.842	ENSMALG00000021622	pabpc1l	100	86.842	Monopterus_albus
ENSGACG00000002792	pabpc1l	100	60.222	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	60.222	Mus_caroli
ENSGACG00000002792	pabpc1l	100	60.252	ENSMUSG00000054582	Pabpc1l	99	60.252	Mus_musculus
ENSGACG00000002792	pabpc1l	99	60.709	MGP_PahariEiJ_G0026071	Pabpc1l	99	60.709	Mus_pahari
ENSGACG00000002792	pabpc1l	100	60.222	MGP_SPRETEiJ_G0025549	Pabpc1l	99	60.222	Mus_spretus
ENSGACG00000002792	pabpc1l	100	67.834	ENSMPUG00000017646	PABPC1L	99	67.834	Mustela_putorius_furo
ENSGACG00000002792	pabpc1l	99	65.238	ENSMLUG00000006324	PABPC1L	98	65.238	Myotis_lucifugus
ENSGACG00000002792	pabpc1l	99	61.746	ENSNGAG00000010458	Pabpc1l	99	61.746	Nannospalax_galili
ENSGACG00000002792	pabpc1l	99	93.012	ENSNBRG00000016633	pabpc1l	99	93.012	Neolamprologus_brichardi
ENSGACG00000002792	pabpc1l	90	63.701	ENSMEUG00000007905	-	89	63.701	Notamacropus_eugenii
ENSGACG00000002792	pabpc1l	99	66.827	ENSOPRG00000011846	PABPC1L	99	66.827	Ochotona_princeps
ENSGACG00000002792	pabpc1l	99	59.486	ENSODEG00000015482	PABPC1L	99	59.486	Octodon_degus
ENSGACG00000002792	pabpc1l	57	79.375	ENSODEG00000002920	-	97	79.375	Octodon_degus
ENSGACG00000002792	pabpc1l	100	86.901	ENSONIG00000017314	pabpc1l	99	86.901	Oreochromis_niloticus
ENSGACG00000002792	pabpc1l	90	61.552	ENSOANG00000015793	-	100	61.552	Ornithorhynchus_anatinus
ENSGACG00000002792	pabpc1l	99	63.247	ENSOCUG00000003005	PABPC1L	99	64.012	Oryctolagus_cuniculus
ENSGACG00000002792	pabpc1l	99	88.152	ENSORLG00000010322	pabpc1l	99	88.152	Oryzias_latipes
ENSGACG00000002792	pabpc1l	99	88.152	ENSORLG00020021193	pabpc1l	99	88.152	Oryzias_latipes_hni
ENSGACG00000002792	pabpc1l	99	88.152	ENSORLG00015017018	pabpc1l	99	88.152	Oryzias_latipes_hsok
ENSGACG00000002792	pabpc1l	100	80.183	ENSOMEG00000010789	pabpc1l	99	80.183	Oryzias_melastigma
ENSGACG00000002792	pabpc1l	100	66.719	ENSOGAG00000032999	PABPC1L	99	66.719	Otolemur_garnettii
ENSGACG00000002792	pabpc1l	99	66.399	ENSOARG00000004578	PABPC1L	99	66.399	Ovis_aries
ENSGACG00000002792	pabpc1l	99	67.468	ENSPPAG00000039677	PABPC1L	99	67.628	Pan_paniscus
ENSGACG00000002792	pabpc1l	62	67.901	ENSPPRG00000019327	-	98	67.901	Panthera_pardus
ENSGACG00000002792	pabpc1l	99	67.363	ENSPTIG00000006524	PABPC1L	99	67.363	Panthera_tigris_altaica
ENSGACG00000002792	pabpc1l	62	76.543	ENSPTRG00000013531	PABPC1L	98	76.543	Pan_troglodytes
ENSGACG00000002792	pabpc1l	99	67.145	ENSPANG00000018788	PABPC1L	99	67.624	Papio_anubis
ENSGACG00000002792	pabpc1l	53	83.969	ENSPKIG00000016810	-	93	83.969	Paramormyrops_kingsleyae
ENSGACG00000002792	pabpc1l	100	78.628	ENSPKIG00000007322	pabpc1l	99	78.628	Paramormyrops_kingsleyae
ENSGACG00000002792	pabpc1l	67	81.535	ENSPSIG00000013289	PABPC1L	99	81.535	Pelodiscus_sinensis
ENSGACG00000002792	pabpc1l	70	87.179	ENSPMGG00000023121	-	91	87.179	Periophthalmus_magnuspinnatus
ENSGACG00000002792	pabpc1l	62	96.212	ENSPMGG00000023117	pabpc1l	99	96.212	Periophthalmus_magnuspinnatus
ENSGACG00000002792	pabpc1l	99	59.494	ENSPEMG00000020671	Pabpc1l	98	60.543	Peromyscus_maniculatus_bairdii
ENSGACG00000002792	pabpc1l	100	86.656	ENSPFOG00000013241	pabpc1l	99	86.656	Poecilia_formosa
ENSGACG00000002792	pabpc1l	100	86.817	ENSPLAG00000017490	-	99	86.817	Poecilia_latipinna
ENSGACG00000002792	pabpc1l	52	100.000	ENSPLAG00000023686	-	92	100.000	Poecilia_latipinna
ENSGACG00000002792	pabpc1l	52	100.000	ENSPMEG00000009185	-	88	100.000	Poecilia_mexicana
ENSGACG00000002792	pabpc1l	100	86.795	ENSPMEG00000007677	pabpc1l	99	86.795	Poecilia_mexicana
ENSGACG00000002792	pabpc1l	66	93.674	ENSPREG00000015886	pabpc1l	99	93.674	Poecilia_reticulata
ENSGACG00000002792	pabpc1l	99	66.826	ENSPPYG00000011042	PABPC1L	99	67.464	Pongo_abelii
ENSGACG00000002792	pabpc1l	61	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSGACG00000002792	pabpc1l	99	66.507	ENSPCOG00000020630	PABPC1L	99	67.145	Propithecus_coquereli
ENSGACG00000002792	pabpc1l	100	65.397	ENSPVAG00000012663	PABPC1L	99	65.397	Pteropus_vampyrus
ENSGACG00000002792	pabpc1l	99	93.253	ENSPNYG00000004101	pabpc1l	99	93.253	Pundamilia_nyererei
ENSGACG00000002792	pabpc1l	100	71.383	ENSPNAG00000021248	pabpc1l	99	71.383	Pygocentrus_nattereri
ENSGACG00000002792	pabpc1l	100	59.588	ENSRNOG00000012750	Pabpc1l	99	59.779	Rattus_norvegicus
ENSGACG00000002792	pabpc1l	99	67.464	ENSRBIG00000035381	PABPC1L	99	67.624	Rhinopithecus_bieti
ENSGACG00000002792	pabpc1l	99	67.305	ENSRROG00000044498	PABPC1L	99	67.464	Rhinopithecus_roxellana
ENSGACG00000002792	pabpc1l	99	67.360	ENSSBOG00000009532	-	99	67.360	Saimiri_boliviensis_boliviensis
ENSGACG00000002792	pabpc1l	99	64.718	ENSSHAG00000011446	PABPC1L	100	64.718	Sarcophilus_harrisii
ENSGACG00000002792	pabpc1l	99	78.435	ENSSFOG00015017304	pabpc1l	99	78.435	Scleropages_formosus
ENSGACG00000002792	pabpc1l	100	87.500	ENSSMAG00000010516	pabpc1l	98	98.450	Scophthalmus_maximus
ENSGACG00000002792	pabpc1l	100	87.220	ENSSDUG00000014743	pabpc1l	99	87.220	Seriola_dumerili
ENSGACG00000002792	pabpc1l	99	93.494	ENSSLDG00000006981	pabpc1l	98	95.694	Seriola_lalandi_dorsalis
ENSGACG00000002792	pabpc1l	100	72.857	ENSSPUG00000004233	PABPC1L	98	72.857	Sphenodon_punctatus
ENSGACG00000002792	pabpc1l	100	72.947	ENSSPAG00000017137	pabpc1l	99	72.947	Stegastes_partitus
ENSGACG00000002792	pabpc1l	99	67.252	ENSSSCG00000007382	PABPC1L	99	67.252	Sus_scrofa
ENSGACG00000002792	pabpc1l	99	70.000	ENSTGUG00000005114	PABPC1L	99	70.000	Taeniopygia_guttata
ENSGACG00000002792	pabpc1l	97	86.020	ENSTRUG00000011085	pabpc1l	97	86.020	Takifugu_rubripes
ENSGACG00000002792	pabpc1l	99	84.270	ENSTNIG00000017903	pabpc1l	98	84.270	Tetraodon_nigroviridis
ENSGACG00000002792	pabpc1l	94	77.397	ENSTBEG00000002851	PABPC1L	79	77.397	Tupaia_belangeri
ENSGACG00000002792	pabpc1l	95	65.378	ENSTTRG00000007618	PABPC1L	100	65.466	Tursiops_truncatus
ENSGACG00000002792	pabpc1l	100	65.335	ENSUAMG00000017682	PABPC1L	99	65.335	Ursus_americanus
ENSGACG00000002792	pabpc1l	71	68.274	ENSUMAG00000025436	PABPC1L	96	68.274	Ursus_maritimus
ENSGACG00000002792	pabpc1l	99	75.099	ENSVVUG00000018939	PABPC1L	99	75.099	Vulpes_vulpes
ENSGACG00000002792	pabpc1l	100	69.572	ENSXETG00000022831	pabpc1l	99	69.572	Xenopus_tropicalis
ENSGACG00000002792	pabpc1l	99	91.346	ENSXCOG00000005459	pabpc1l	99	93.617	Xiphophorus_couchianus
ENSGACG00000002792	pabpc1l	100	85.209	ENSXMAG00000017135	pabpc1l	99	85.209	Xiphophorus_maculatus