EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000002798 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 23162 bases
Position: chrgroupXVI:6698167-6721328
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000003660	CMS1	PF14617.6	3.4e-35	1	1
ENSGACP00000003660	DEAD	PF00270.29	1.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000003672	-	1047	-	ENSGACP00000003660	279 (aa)	-	G3NEA9

Gene Model

Click here to download ENSGACG00000002798's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000002798's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000002798	cmss1	100	48.387	ENSG00000184220	CMSS1	98	53.750	Homo_sapiens
ENSGACG00000002798	cmss1	73	81.281	ENSAPOG00000010604	cmss1	99	72.519	Acanthochromis_polyacanthus
ENSGACG00000002798	cmss1	72	56.158	ENSAMEG00000004092	CMSS1	78	56.158	Ailuropoda_melanoleuca
ENSGACG00000002798	cmss1	90	67.829	ENSACIG00000021854	cmss1	98	68.217	Amphilophus_citrinellus
ENSGACG00000002798	cmss1	100	69.580	ENSAOCG00000013361	cmss1	99	71.678	Amphiprion_ocellaris
ENSGACG00000002798	cmss1	100	73.519	ENSAPEG00000005829	cmss1	99	72.125	Amphiprion_percula
ENSGACG00000002798	cmss1	100	70.383	ENSATEG00000008209	cmss1	99	70.035	Anabas_testudineus
ENSGACG00000002798	cmss1	72	62.376	ENSAPLG00000010542	CMSS1	88	62.376	Anas_platyrhynchos
ENSGACG00000002798	cmss1	97	53.214	ENSACAG00000011065	CMSS1	74	60.891	Anolis_carolinensis
ENSGACG00000002798	cmss1	100	47.857	ENSANAG00000023565	CMSS1	99	46.996	Aotus_nancymaae
ENSGACG00000002798	cmss1	100	72.222	ENSACLG00000027294	cmss1	99	72.569	Astatotilapia_calliptera
ENSGACG00000002798	cmss1	100	54.882	ENSAMXG00000002046	cmss1	99	56.014	Astyanax_mexicanus
ENSGACG00000002798	cmss1	100	48.387	ENSBTAG00000013663	CMSS1	99	47.312	Bos_taurus
ENSGACG00000002798	cmss1	100	49.648	ENSCJAG00000000610	CMSS1	99	48.592	Callithrix_jacchus
ENSGACG00000002798	cmss1	97	49.815	ENSCAFG00000009230	CMSS1	73	57.426	Canis_familiaris
ENSGACG00000002798	cmss1	68	58.421	ENSCAFG00020024156	-	60	58.421	Canis_lupus_dingo
ENSGACG00000002798	cmss1	97	49.815	ENSCAFG00020009464	-	74	57.426	Canis_lupus_dingo
ENSGACG00000002798	cmss1	72	56.436	ENSCHIG00000013003	CMSS1	73	56.436	Capra_hircus
ENSGACG00000002798	cmss1	86	52.720	ENSTSYG00000009266	CMSS1	78	56.436	Carlito_syrichta
ENSGACG00000002798	cmss1	77	46.296	ENSCAPG00000013584	CMSS1	88	49.733	Cavia_aperea
ENSGACG00000002798	cmss1	100	51.071	ENSCPOG00000014680	CMSS1	99	48.929	Cavia_porcellus
ENSGACG00000002798	cmss1	100	48.763	ENSCCAG00000034685	CMSS1	99	48.763	Cebus_capucinus
ENSGACG00000002798	cmss1	100	49.645	ENSCATG00000031980	CMSS1	99	48.227	Cercocebus_atys
ENSGACG00000002798	cmss1	84	53.191	ENSCLAG00000011241	CMSS1	87	56.436	Chinchilla_lanigera
ENSGACG00000002798	cmss1	85	53.586	ENSCSAG00000006024	CMSS1	82	57.426	Chlorocebus_sabaeus
ENSGACG00000002798	cmss1	100	39.785	ENSCHOG00000012098	CMSS1	99	39.785	Choloepus_hoffmanni
ENSGACG00000002798	cmss1	67	44.211	ENSCING00000014848	-	99	44.385	Ciona_intestinalis
ENSGACG00000002798	cmss1	100	49.645	ENSCANG00000031337	CMSS1	99	48.227	Colobus_angolensis_palliatus
ENSGACG00000002798	cmss1	100	46.953	ENSCGRG00001014305	Cmss1	99	46.953	Cricetulus_griseus_chok1gshd
ENSGACG00000002798	cmss1	72	55.446	ENSCGRG00000006722	Cmss1	79	55.446	Cricetulus_griseus_crigri
ENSGACG00000002798	cmss1	100	66.781	ENSCSEG00000004958	cmss1	99	66.096	Cynoglossus_semilaevis
ENSGACG00000002798	cmss1	100	64.931	ENSCVAG00000005039	cmss1	99	65.972	Cyprinodon_variegatus
ENSGACG00000002798	cmss1	100	57.931	ENSDARG00000112579	cmss1	99	55.517	Danio_rerio
ENSGACG00000002798	cmss1	97	50.000	ENSDNOG00000040418	CMSS1	73	57.426	Dasypus_novemcinctus
ENSGACG00000002798	cmss1	100	49.104	ENSDORG00000010461	Cmss1	99	48.763	Dipodomys_ordii
ENSGACG00000002798	cmss1	72	55.000	ENSEASG00005010966	CMSS1	92	55.446	Equus_asinus_asinus
ENSGACG00000002798	cmss1	97	47.037	ENSECAG00000015662	CMSS1	89	54.950	Equus_caballus
ENSGACG00000002798	cmss1	72	39.000	ENSEEUG00000007624	-	73	39.604	Erinaceus_europaeus
ENSGACG00000002798	cmss1	100	58.054	ENSELUG00000019459	cmss1	99	57.718	Esox_lucius
ENSGACG00000002798	cmss1	100	49.104	ENSFCAG00000044577	CMSS1	99	48.746	Felis_catus
ENSGACG00000002798	cmss1	78	59.633	ENSFALG00000005816	CMSS1	92	59.633	Ficedula_albicollis
ENSGACG00000002798	cmss1	72	57.426	ENSFDAG00000012577	CMSS1	89	57.426	Fukomys_damarensis
ENSGACG00000002798	cmss1	81	72.247	ENSFHEG00000012008	cmss1	84	74.877	Fundulus_heteroclitus
ENSGACG00000002798	cmss1	100	64.516	ENSGMOG00000016729	cmss1	100	64.516	Gadus_morhua
ENSGACG00000002798	cmss1	96	54.478	ENSGALG00000015267	CMSS1	82	62.150	Gallus_gallus
ENSGACG00000002798	cmss1	90	68.217	ENSGAFG00000021217	cmss1	77	75.862	Gambusia_affinis
ENSGACG00000002798	cmss1	93	51.698	ENSGAGG00000019861	CMSS1	85	58.716	Gopherus_agassizii
ENSGACG00000002798	cmss1	85	53.165	ENSGGOG00000014125	CMSS1	77	56.931	Gorilla_gorilla
ENSGACG00000002798	cmss1	100	71.080	ENSHBUG00000008431	cmss1	99	72.125	Haplochromis_burtoni
ENSGACG00000002798	cmss1	72	56.500	ENSHGLG00000019481	CMSS1	82	56.931	Heterocephalus_glaber_female
ENSGACG00000002798	cmss1	72	56.500	ENSHGLG00100010314	CMSS1	81	56.931	Heterocephalus_glaber_male
ENSGACG00000002798	cmss1	100	64.384	ENSHCOG00000003222	cmss1	99	63.014	Hippocampus_comes
ENSGACG00000002798	cmss1	100	57.338	ENSIPUG00000011591	cmss1	99	59.028	Ictalurus_punctatus
ENSGACG00000002798	cmss1	100	48.239	ENSSTOG00000019366	CMSS1	99	47.535	Ictidomys_tridecemlineatus
ENSGACG00000002798	cmss1	100	47.518	ENSJJAG00000014894	Cmss1	90	56.931	Jaculus_jaculus
ENSGACG00000002798	cmss1	80	62.140	ENSKMAG00000002390	cmss1	82	69.951	Kryptolebias_marmoratus
ENSGACG00000002798	cmss1	88	70.040	ENSLBEG00000006298	cmss1	83	75.980	Labrus_bergylta
ENSGACG00000002798	cmss1	72	61.881	ENSLACG00000009293	CMSS1	88	61.881	Latimeria_chalumnae
ENSGACG00000002798	cmss1	100	51.943	ENSLOCG00000009391	cmss1	99	51.943	Lepisosteus_oculatus
ENSGACG00000002798	cmss1	72	57.500	ENSLAFG00000017509	CMSS1	89	57.921	Loxodonta_africana
ENSGACG00000002798	cmss1	100	49.291	ENSMFAG00000045006	CMSS1	99	47.872	Macaca_fascicularis
ENSGACG00000002798	cmss1	100	49.645	ENSMMUG00000002939	CMSS1	92	56.731	Macaca_mulatta
ENSGACG00000002798	cmss1	100	49.291	ENSMNEG00000031315	CMSS1	99	47.872	Macaca_nemestrina
ENSGACG00000002798	cmss1	100	49.645	ENSMLEG00000033660	CMSS1	99	48.227	Mandrillus_leucophaeus
ENSGACG00000002798	cmss1	100	69.686	ENSMAMG00000017176	cmss1	99	70.383	Mastacembelus_armatus
ENSGACG00000002798	cmss1	100	72.222	ENSMZEG00005021886	cmss1	99	72.569	Maylandia_zebra
ENSGACG00000002798	cmss1	72	62.871	ENSMGAG00000014360	CMSS1	89	62.871	Meleagris_gallopavo
ENSGACG00000002798	cmss1	100	34.737	ENSMAUG00000020609	Cmss1	99	33.569	Mesocricetus_auratus
ENSGACG00000002798	cmss1	100	49.296	ENSMICG00000048977	CMSS1	99	48.944	Microcebus_murinus
ENSGACG00000002798	cmss1	100	48.239	ENSMOCG00000021937	Cmss1	99	47.535	Microtus_ochrogaster
ENSGACG00000002798	cmss1	89	68.826	ENSMMOG00000019794	cmss1	97	68.421	Mola_mola
ENSGACG00000002798	cmss1	72	59.406	ENSMODG00000002275	CMSS1	76	59.406	Monodelphis_domestica
ENSGACG00000002798	cmss1	100	70.139	ENSMALG00000004250	cmss1	99	68.056	Monopterus_albus
ENSGACG00000002798	cmss1	100	50.704	MGP_CAROLIEiJ_G0020824	Cmss1	99	49.648	Mus_caroli
ENSGACG00000002798	cmss1	100	50.000	ENSMUSG00000022748	Cmss1	99	48.944	Mus_musculus
ENSGACG00000002798	cmss1	100	49.825	MGP_PahariEiJ_G0016524	Cmss1	99	48.772	Mus_pahari
ENSGACG00000002798	cmss1	100	50.352	MGP_SPRETEiJ_G0021724	Cmss1	99	48.582	Mus_spretus
ENSGACG00000002798	cmss1	96	50.562	ENSMPUG00000011324	CMSS1	78	57.711	Mustela_putorius_furo
ENSGACG00000002798	cmss1	72	56.931	ENSMLUG00000001131	CMSS1	78	57.353	Myotis_lucifugus
ENSGACG00000002798	cmss1	100	48.029	ENSNGAG00000020316	Cmss1	99	47.670	Nannospalax_galili
ENSGACG00000002798	cmss1	100	70.139	ENSNBRG00000003095	cmss1	99	72.569	Neolamprologus_brichardi
ENSGACG00000002798	cmss1	100	49.104	ENSNLEG00000034172	CMSS1	99	48.227	Nomascus_leucogenys
ENSGACG00000002798	cmss1	72	48.515	ENSMEUG00000014505	CMSS1	89	48.515	Notamacropus_eugenii
ENSGACG00000002798	cmss1	100	49.291	ENSOPRG00000002986	CMSS1	99	48.399	Ochotona_princeps
ENSGACG00000002798	cmss1	100	50.179	ENSODEG00000005226	-	99	50.179	Octodon_degus
ENSGACG00000002798	cmss1	100	41.219	ENSODEG00000009446	-	99	38.194	Octodon_degus
ENSGACG00000002798	cmss1	100	48.746	ENSODEG00000003558	-	75	56.931	Octodon_degus
ENSGACG00000002798	cmss1	100	44.326	ENSODEG00000001853	-	99	43.011	Octodon_degus
ENSGACG00000002798	cmss1	90	74.419	ENSONIG00000006678	cmss1	99	75.194	Oreochromis_niloticus
ENSGACG00000002798	cmss1	96	50.187	ENSOANG00000007529	CMSS1	87	56.931	Ornithorhynchus_anatinus
ENSGACG00000002798	cmss1	72	58.416	ENSOCUG00000025366	CMSS1	73	58.416	Oryctolagus_cuniculus
ENSGACG00000002798	cmss1	100	68.881	ENSORLG00000020340	cmss1	99	67.254	Oryzias_latipes
ENSGACG00000002798	cmss1	75	69.712	ENSORLG00020012235	cmss1	86	69.458	Oryzias_latipes_hni
ENSGACG00000002798	cmss1	90	61.024	ENSORLG00015015551	cmss1	76	68.966	Oryzias_latipes_hsok
ENSGACG00000002798	cmss1	100	69.930	ENSOMEG00000012555	cmss1	99	66.899	Oryzias_melastigma
ENSGACG00000002798	cmss1	72	55.941	ENSOGAG00000002045	CMSS1	89	55.941	Otolemur_garnettii
ENSGACG00000002798	cmss1	72	56.158	ENSOARG00000017899	CMSS1	70	56.158	Ovis_aries
ENSGACG00000002798	cmss1	85	53.165	ENSPPAG00000038515	CMSS1	74	56.931	Pan_paniscus
ENSGACG00000002798	cmss1	100	48.746	ENSPPRG00000016767	CMSS1	99	48.227	Panthera_pardus
ENSGACG00000002798	cmss1	100	48.387	ENSPTIG00000018274	CMSS1	99	48.227	Panthera_tigris_altaica
ENSGACG00000002798	cmss1	100	48.746	ENSPTRG00000015157	CMSS1	99	48.227	Pan_troglodytes
ENSGACG00000002798	cmss1	72	57.426	ENSPANG00000019980	CMSS1	96	47.445	Papio_anubis
ENSGACG00000002798	cmss1	97	60.507	ENSPKIG00000012609	cmss1	99	59.041	Paramormyrops_kingsleyae
ENSGACG00000002798	cmss1	78	61.468	ENSPSIG00000003849	CMSS1	95	61.468	Pelodiscus_sinensis
ENSGACG00000002798	cmss1	73	73.529	ENSPMGG00000010286	cmss1	88	73.529	Periophthalmus_magnuspinnatus
ENSGACG00000002798	cmss1	100	48.421	ENSPEMG00000016384	Cmss1	99	47.703	Peromyscus_maniculatus_bairdii
ENSGACG00000002798	cmss1	73	51.961	ENSPMAG00000001146	cmss1	99	52.217	Petromyzon_marinus
ENSGACG00000002798	cmss1	97	49.632	ENSPCIG00000015656	CMSS1	77	57.426	Phascolarctos_cinereus
ENSGACG00000002798	cmss1	100	67.014	ENSPFOG00000016849	cmss1	99	67.708	Poecilia_formosa
ENSGACG00000002798	cmss1	100	66.667	ENSPLAG00000008323	cmss1	99	67.361	Poecilia_latipinna
ENSGACG00000002798	cmss1	100	67.014	ENSPMEG00000021020	cmss1	99	68.750	Poecilia_mexicana
ENSGACG00000002798	cmss1	90	69.884	ENSPREG00000007618	cmss1	94	68.478	Poecilia_reticulata
ENSGACG00000002798	cmss1	100	48.387	ENSPPYG00000013606	CMSS1	99	45.333	Pongo_abelii
ENSGACG00000002798	cmss1	100	49.462	ENSPCOG00000020035	CMSS1	99	49.110	Propithecus_coquereli
ENSGACG00000002798	cmss1	100	41.844	ENSPVAG00000017031	CMSS1	99	41.489	Pteropus_vampyrus
ENSGACG00000002798	cmss1	91	72.137	ENSPNYG00000013428	cmss1	96	72.453	Pundamilia_nyererei
ENSGACG00000002798	cmss1	100	57.732	ENSPNAG00000007912	cmss1	99	56.314	Pygocentrus_nattereri
ENSGACG00000002798	cmss1	96	50.373	ENSRNOG00000027888	Cmss1	79	56.931	Rattus_norvegicus
ENSGACG00000002798	cmss1	100	49.291	ENSRBIG00000037931	CMSS1	99	47.518	Rhinopithecus_bieti
ENSGACG00000002798	cmss1	100	49.291	ENSRROG00000042910	CMSS1	99	47.518	Rhinopithecus_roxellana
ENSGACG00000002798	cmss1	72	55.941	ENSSBOG00000030980	CMSS1	77	55.941	Saimiri_boliviensis_boliviensis
ENSGACG00000002798	cmss1	72	58.911	ENSSHAG00000009321	CMSS1	80	58.911	Sarcophilus_harrisii
ENSGACG00000002798	cmss1	100	60.976	ENSSFOG00015001509	cmss1	99	61.672	Scleropages_formosus
ENSGACG00000002798	cmss1	100	70.486	ENSSMAG00000001653	cmss1	99	70.588	Scophthalmus_maximus
ENSGACG00000002798	cmss1	100	73.427	ENSSDUG00000007719	cmss1	99	73.077	Seriola_dumerili
ENSGACG00000002798	cmss1	91	70.370	ENSSLDG00000012300	cmss1	95	69.366	Seriola_lalandi_dorsalis
ENSGACG00000002798	cmss1	100	41.935	ENSSARG00000003584	CMSS1	99	41.935	Sorex_araneus
ENSGACG00000002798	cmss1	80	57.658	ENSSPUG00000003865	CMSS1	96	58.257	Sphenodon_punctatus
ENSGACG00000002798	cmss1	95	71.053	ENSSPAG00000019182	cmss1	82	71.053	Stegastes_partitus
ENSGACG00000002798	cmss1	100	48.746	ENSSSCG00000011970	CMSS1	99	48.387	Sus_scrofa
ENSGACG00000002798	cmss1	72	60.891	ENSTGUG00000013635	CMSS1	95	60.092	Taeniopygia_guttata
ENSGACG00000002798	cmss1	100	65.734	ENSTRUG00000015265	cmss1	99	65.845	Takifugu_rubripes
ENSGACG00000002798	cmss1	73	66.995	ENSTNIG00000002880	cmss1	74	66.995	Tetraodon_nigroviridis
ENSGACG00000002798	cmss1	72	41.089	ENSTBEG00000016722	CMSS1	72	41.089	Tupaia_belangeri
ENSGACG00000002798	cmss1	100	48.057	ENSTTRG00000001562	CMSS1	99	46.996	Tursiops_truncatus
ENSGACG00000002798	cmss1	72	56.931	ENSUAMG00000024209	CMSS1	91	56.931	Ursus_americanus
ENSGACG00000002798	cmss1	72	56.436	ENSUMAG00000001983	CMSS1	78	56.436	Ursus_maritimus
ENSGACG00000002798	cmss1	100	38.351	ENSVPAG00000000263	CMSS1	57	55.000	Vicugna_pacos
ENSGACG00000002798	cmss1	72	56.931	ENSVVUG00000007776	-	80	56.931	Vulpes_vulpes
ENSGACG00000002798	cmss1	72	57.000	ENSVVUG00000021647	-	82	57.426	Vulpes_vulpes
ENSGACG00000002798	cmss1	100	50.177	ENSXETG00000011858	cmss1	99	50.357	Xenopus_tropicalis
ENSGACG00000002798	cmss1	96	65.942	ENSXCOG00000018724	cmss1	95	65.942	Xiphophorus_couchianus
ENSGACG00000002798	cmss1	90	68.340	ENSXMAG00000011243	cmss1	76	76.355	Xiphophorus_maculatus