EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000003122 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 3646 bases
Position: chrgroupV:2407932-2411577
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000004092	Nop16	PF09420.10	1.9e-14	1	1
ENSGACP00000004100	Nop16	PF09420.10	2e-14	1	1
ENSGACP00000004084	Nop16	PF09420.10	3.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000004106	-	1232	-	ENSGACP00000004092	175 (aa)	-	G3NFJ0
ENSGACT00000004098	-	1302	-	ENSGACP00000004084	117 (aa)	-	G3NFI2
ENSGACT00000004114	-	1021	-	ENSGACP00000004100	172 (aa)	-	G3NFJ8

Gene Model

Click here to download ENSGACG00000003122's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000003122's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000003122	-	100	93.162	ENSGACG00000020819	-	100	86.857
ENSGACG00000003122	-	98	77.586	ENSGACG00000020810	nop16	100	77.586
ENSGACG00000003122	-	100	98.291	ENSGACG00000002618	-	100	92.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000003122	-	98	71.304	ENSAPOG00000010682	-	97	68.786	Acanthochromis_polyacanthus
ENSGACG00000003122	-	97	53.913	ENSAMEG00000006988	-	96	50.000	Ailuropoda_melanoleuca
ENSGACG00000003122	-	100	68.376	ENSACIG00000019263	nop16	97	61.143	Amphilophus_citrinellus
ENSGACG00000003122	-	98	72.174	ENSAOCG00000005504	nop16	97	69.364	Amphiprion_ocellaris
ENSGACG00000003122	-	98	72.174	ENSAPEG00000006605	nop16	97	69.364	Amphiprion_percula
ENSGACG00000003122	-	100	74.359	ENSATEG00000014089	nop16	97	70.857	Anabas_testudineus
ENSGACG00000003122	-	97	58.974	ENSACAG00000006333	-	96	53.757	Anolis_carolinensis
ENSGACG00000003122	-	97	51.724	ENSANAG00000015743	-	95	48.276	Aotus_nancymaae
ENSGACG00000003122	-	97	49.565	ENSANAG00000027410	-	95	45.930	Aotus_nancymaae
ENSGACG00000003122	-	100	66.667	ENSACLG00000025227	nop16	97	61.143	Astatotilapia_calliptera
ENSGACG00000003122	-	99	50.862	ENSAMXG00000006843	nop16	91	47.799	Astyanax_mexicanus
ENSGACG00000003122	-	97	54.783	ENSBTAG00000010734	NOP16	96	51.163	Bos_taurus
ENSGACG00000003122	-	85	32.787	WBGene00013958	ZK265.6	69	31.298	Caenorhabditis_elegans
ENSGACG00000003122	-	97	53.043	ENSCAFG00000016694	NOP16	96	51.163	Canis_familiaris
ENSGACG00000003122	-	97	53.043	ENSCAFG00020011505	-	90	51.163	Canis_lupus_dingo
ENSGACG00000003122	-	97	54.783	ENSCHIG00000022082	-	96	51.163	Capra_hircus
ENSGACG00000003122	-	97	54.783	ENSTSYG00000030409	-	96	50.581	Carlito_syrichta
ENSGACG00000003122	-	97	50.435	ENSTSYG00000032690	-	95	43.605	Carlito_syrichta
ENSGACG00000003122	-	97	53.913	ENSCPOG00000026072	-	96	51.744	Cavia_porcellus
ENSGACG00000003122	-	89	53.333	ENSCCAG00000026775	-	93	50.000	Cebus_capucinus
ENSGACG00000003122	-	97	53.043	ENSCLAG00000015405	-	96	50.581	Chinchilla_lanigera
ENSGACG00000003122	-	97	54.783	ENSCSAG00000009400	-	96	51.163	Chlorocebus_sabaeus
ENSGACG00000003122	-	97	54.545	ENSCPBG00000022647	-	96	50.279	Chrysemys_picta_bellii
ENSGACG00000003122	-	98	36.723	ENSCING00000006179	-	87	34.337	Ciona_intestinalis
ENSGACG00000003122	-	98	35.882	ENSCSAVG00000000269	-	84	34.641	Ciona_savignyi
ENSGACG00000003122	-	97	55.652	ENSCGRG00001004259	Nop16	96	52.326	Cricetulus_griseus_chok1gshd
ENSGACG00000003122	-	97	55.652	ENSCGRG00000010975	Nop16	96	52.326	Cricetulus_griseus_crigri
ENSGACG00000003122	-	99	65.517	ENSCSEG00000020523	nop16	91	58.642	Cynoglossus_semilaevis
ENSGACG00000003122	-	100	72.650	ENSCVAG00000020140	nop16	97	65.714	Cyprinodon_variegatus
ENSGACG00000003122	-	99	52.542	ENSDARG00000044402	nop16	91	47.561	Danio_rerio
ENSGACG00000003122	-	97	54.386	ENSDNOG00000042890	-	95	52.326	Dasypus_novemcinctus
ENSGACG00000003122	-	99	54.545	ENSDORG00000008872	Nop16	96	51.744	Dipodomys_ordii
ENSGACG00000003122	-	96	38.636	ENSEBUG00000011196	nop16	88	37.195	Eptatretus_burgeri
ENSGACG00000003122	-	97	54.783	ENSEASG00005011988	-	96	51.744	Equus_asinus_asinus
ENSGACG00000003122	-	97	54.783	ENSECAG00000021354	NOP16	96	51.163	Equus_caballus
ENSGACG00000003122	-	97	62.069	ENSELUG00000000401	nop16	90	58.025	Esox_lucius
ENSGACG00000003122	-	97	55.652	ENSFCAG00000025473	-	96	51.163	Felis_catus
ENSGACG00000003122	-	97	51.724	ENSFALG00000008553	-	96	45.977	Ficedula_albicollis
ENSGACG00000003122	-	97	53.448	ENSFDAG00000000193	-	96	48.851	Fukomys_damarensis
ENSGACG00000003122	-	100	69.231	ENSFHEG00000016452	nop16	97	65.143	Fundulus_heteroclitus
ENSGACG00000003122	-	97	50.427	ENSGALG00000003355	-	96	47.429	Gallus_gallus
ENSGACG00000003122	-	99	71.552	ENSGAFG00000011616	nop16	81	64.189	Gambusia_affinis
ENSGACG00000003122	-	100	64.957	ENSHBUG00000013527	nop16	97	60.000	Haplochromis_burtoni
ENSGACG00000003122	-	97	53.913	ENSHGLG00000013437	NOP16	96	51.163	Heterocephalus_glaber_female
ENSGACG00000003122	-	97	53.913	ENSHGLG00100011375	NOP16	96	51.163	Heterocephalus_glaber_male
ENSGACG00000003122	-	100	70.940	ENSHCOG00000019999	nop16	91	64.417	Hippocampus_comes
ENSGACG00000003122	-	99	52.586	ENSIPUG00000006682	nop16	90	52.469	Ictalurus_punctatus
ENSGACG00000003122	-	97	54.701	ENSSTOG00000004869	-	96	50.286	Ictidomys_tridecemlineatus
ENSGACG00000003122	-	99	52.137	ENSJJAG00000017655	Nop16	96	51.163	Jaculus_jaculus
ENSGACG00000003122	-	100	70.085	ENSKMAG00000006164	nop16	97	65.714	Kryptolebias_marmoratus
ENSGACG00000003122	-	100	79.487	ENSLBEG00000018355	nop16	79	73.143	Labrus_bergylta
ENSGACG00000003122	-	70	78.049	ENSLBEG00000013819	-	57	78.049	Labrus_bergylta
ENSGACG00000003122	-	97	58.261	ENSLACG00000014884	nop16	96	54.913	Latimeria_chalumnae
ENSGACG00000003122	-	98	58.621	ENSLOCG00000012348	nop16	95	57.225	Lepisosteus_oculatus
ENSGACG00000003122	-	97	54.386	ENSLAFG00000017886	-	95	52.326	Loxodonta_africana
ENSGACG00000003122	-	100	72.650	ENSMAMG00000021868	nop16	97	66.477	Mastacembelus_armatus
ENSGACG00000003122	-	100	66.667	ENSMZEG00005012112	nop16	97	61.143	Maylandia_zebra
ENSGACG00000003122	-	72	57.143	ENSMGAG00000004726	-	90	53.261	Meleagris_gallopavo
ENSGACG00000003122	-	74	60.920	ENSMAUG00000009852	-	87	58.696	Mesocricetus_auratus
ENSGACG00000003122	-	97	52.174	ENSMAUG00000015569	-	93	49.375	Mesocricetus_auratus
ENSGACG00000003122	-	97	54.783	ENSMOCG00000020788	Nop16	96	51.744	Microtus_ochrogaster
ENSGACG00000003122	-	98	72.174	ENSMMOG00000016054	nop16	99	67.630	Mola_mola
ENSGACG00000003122	-	97	59.483	ENSMODG00000005214	-	96	53.448	Monodelphis_domestica
ENSGACG00000003122	-	100	73.504	ENSMALG00000021263	nop16	97	70.286	Monopterus_albus
ENSGACG00000003122	-	99	52.991	MGP_CAROLIEiJ_G0018538	Nop16	97	50.575	Mus_caroli
ENSGACG00000003122	-	99	53.846	ENSMUSG00000025869	Nop16	97	51.149	Mus_musculus
ENSGACG00000003122	-	97	55.652	MGP_PahariEiJ_G0019603	Nop16	96	52.326	Mus_pahari
ENSGACG00000003122	-	99	53.846	MGP_SPRETEiJ_G0019418	Nop16	97	51.149	Mus_spretus
ENSGACG00000003122	-	97	53.913	ENSMPUG00000016964	-	89	51.250	Mustela_putorius_furo
ENSGACG00000003122	-	97	53.913	ENSMPUG00000012552	-	96	50.581	Mustela_putorius_furo
ENSGACG00000003122	-	97	53.509	ENSMLUG00000003504	-	95	50.581	Myotis_lucifugus
ENSGACG00000003122	-	97	53.913	ENSNGAG00000018045	Nop16	96	52.326	Nannospalax_galili
ENSGACG00000003122	-	100	64.957	ENSNBRG00000015181	nop16	98	60.000	Neolamprologus_brichardi
ENSGACG00000003122	-	97	53.043	ENSODEG00000009586	-	96	50.581	Octodon_degus
ENSGACG00000003122	-	100	70.085	ENSONIG00000016417	nop16	97	63.429	Oreochromis_niloticus
ENSGACG00000003122	-	97	56.522	ENSOCUG00000013171	-	96	51.445	Oryctolagus_cuniculus
ENSGACG00000003122	-	100	69.231	ENSORLG00000026611	nop16	97	61.047	Oryzias_latipes
ENSGACG00000003122	-	100	68.376	ENSOMEG00000023001	nop16	97	63.953	Oryzias_melastigma
ENSGACG00000003122	-	97	53.913	ENSOGAG00000000824	-	96	50.581	Otolemur_garnettii
ENSGACG00000003122	-	97	54.783	ENSOARG00000002165	-	96	51.163	Ovis_aries
ENSGACG00000003122	-	97	54.783	ENSPPAG00000035473	-	96	50.581	Pan_paniscus
ENSGACG00000003122	-	97	55.652	ENSPPRG00000016600	-	96	51.163	Panthera_pardus
ENSGACG00000003122	-	97	55.652	ENSPTIG00000011708	-	96	51.163	Panthera_tigris_altaica
ENSGACG00000003122	-	97	54.783	ENSPTRG00000017560	NOP16	96	50.581	Pan_troglodytes
ENSGACG00000003122	-	97	57.018	ENSPKIG00000009587	nop16	95	52.326	Paramormyrops_kingsleyae
ENSGACG00000003122	-	97	55.556	ENSPSIG00000013546	-	93	53.676	Pelodiscus_sinensis
ENSGACG00000003122	-	95	70.175	ENSPMGG00000003443	nop16	98	66.082	Periophthalmus_magnuspinnatus
ENSGACG00000003122	-	97	53.913	ENSPEMG00000020268	Nop16	96	51.744	Peromyscus_maniculatus_bairdii
ENSGACG00000003122	-	97	57.759	ENSPCIG00000009782	-	96	51.724	Phascolarctos_cinereus
ENSGACG00000003122	-	100	71.795	ENSPFOG00000010549	nop16	97	67.429	Poecilia_formosa
ENSGACG00000003122	-	100	70.085	ENSPLAG00000007124	nop16	66	72.222	Poecilia_latipinna
ENSGACG00000003122	-	100	72.650	ENSPMEG00000008611	nop16	97	68.000	Poecilia_mexicana
ENSGACG00000003122	-	100	70.085	ENSPREG00000012940	nop16	97	66.286	Poecilia_reticulata
ENSGACG00000003122	-	97	55.652	ENSPPYG00000016070	-	96	50.581	Pongo_abelii
ENSGACG00000003122	-	100	65.812	ENSPNYG00000013529	nop16	97	60.571	Pundamilia_nyererei
ENSGACG00000003122	-	99	53.448	ENSPNAG00000016233	nop16	92	50.314	Pygocentrus_nattereri
ENSGACG00000003122	-	97	53.043	ENSRNOG00000017284	Nop16	96	50.581	Rattus_norvegicus
ENSGACG00000003122	-	97	59.483	ENSSHAG00000001724	-	96	51.724	Sarcophilus_harrisii
ENSGACG00000003122	-	99	56.897	ENSSFOG00015010537	nop16	72	53.704	Scleropages_formosus
ENSGACG00000003122	-	100	76.923	ENSSDUG00000022349	nop16	97	71.429	Seriola_dumerili
ENSGACG00000003122	-	100	77.778	ENSSLDG00000025171	nop16	97	72.000	Seriola_lalandi_dorsalis
ENSGACG00000003122	-	75	40.602	ENSSARG00000006699	-	61	40.602	Sorex_araneus
ENSGACG00000003122	-	97	58.621	ENSSPUG00000006508	-	95	56.977	Sphenodon_punctatus
ENSGACG00000003122	-	99	70.690	ENSSPAG00000011772	nop16	97	67.816	Stegastes_partitus
ENSGACG00000003122	-	97	56.897	ENSSSCG00000029577	-	96	52.326	Sus_scrofa
ENSGACG00000003122	-	97	52.137	ENSTGUG00000000543	-	96	48.851	Taeniopygia_guttata
ENSGACG00000003122	-	98	66.087	ENSTRUG00000020255	nop16	96	61.850	Takifugu_rubripes
ENSGACG00000003122	-	100	69.231	ENSTNIG00000007616	nop16	97	64.571	Tetraodon_nigroviridis
ENSGACG00000003122	-	97	53.043	ENSUAMG00000005139	-	96	49.419	Ursus_americanus
ENSGACG00000003122	-	97	53.043	ENSVVUG00000001697	-	90	51.163	Vulpes_vulpes
ENSGACG00000003122	-	97	47.788	ENSXETG00000022342	nop16	91	50.641	Xenopus_tropicalis
ENSGACG00000003122	-	98	70.435	ENSXCOG00000018829	nop16	97	66.474	Xiphophorus_couchianus
ENSGACG00000003122	-	100	71.795	ENSXMAG00000029113	nop16	97	67.429	Xiphophorus_maculatus