EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000003257 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 3271 bases
Position: chrgroupXIX:3126937-3130207
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000004260	HVSL	PF09749.9	6.8e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000004274	-	1110	-	ENSGACP00000004260	277 (aa)	-	G3NG05

Gene Model

Click here to download ENSGACG00000003257's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000003257's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000003257	usb1	81	51.770	ENSG00000103005	USB1	100	52.804	Homo_sapiens
ENSGACG00000003257	usb1	99	68.100	ENSAPOG00000011942	usb1	99	67.025	Acanthochromis_polyacanthus
ENSGACG00000003257	usb1	99	47.464	ENSAMEG00000017205	USB1	97	46.154	Ailuropoda_melanoleuca
ENSGACG00000003257	usb1	82	75.221	ENSACIG00000012234	usb1	83	75.221	Amphilophus_citrinellus
ENSGACG00000003257	usb1	100	68.794	ENSAOCG00000014831	usb1	100	68.085	Amphiprion_ocellaris
ENSGACG00000003257	usb1	100	68.440	ENSAPEG00000000296	usb1	100	67.730	Amphiprion_percula
ENSGACG00000003257	usb1	100	74.021	ENSATEG00000009348	usb1	100	73.665	Anabas_testudineus
ENSGACG00000003257	usb1	80	53.778	ENSAPLG00000002756	USB1	99	53.778	Anas_platyrhynchos
ENSGACG00000003257	usb1	80	49.333	ENSACAG00000015481	USB1	98	49.333	Anolis_carolinensis
ENSGACG00000003257	usb1	81	50.442	ENSANAG00000035640	USB1	85	50.442	Aotus_nancymaae
ENSGACG00000003257	usb1	90	74.000	ENSACLG00000020586	usb1	88	74.000	Astatotilapia_calliptera
ENSGACG00000003257	usb1	99	54.762	ENSAMXG00000040146	usb1	90	55.351	Astyanax_mexicanus
ENSGACG00000003257	usb1	99	48.551	ENSBTAG00000015758	USB1	94	49.398	Bos_taurus
ENSGACG00000003257	usb1	81	52.212	ENSCJAG00000011733	USB1	85	52.212	Callithrix_jacchus
ENSGACG00000003257	usb1	99	46.931	ENSCAFG00000008556	USB1	62	49.138	Canis_familiaris
ENSGACG00000003257	usb1	99	46.909	ENSCAFG00020009263	USB1	84	51.121	Canis_lupus_dingo
ENSGACG00000003257	usb1	99	48.014	ENSCHIG00000024290	USB1	94	48.996	Capra_hircus
ENSGACG00000003257	usb1	82	50.877	ENSTSYG00000006997	USB1	86	50.877	Carlito_syrichta
ENSGACG00000003257	usb1	83	41.126	ENSCAPG00000009057	USB1	99	41.126	Cavia_aperea
ENSGACG00000003257	usb1	99	47.826	ENSCPOG00000014325	USB1	97	47.490	Cavia_porcellus
ENSGACG00000003257	usb1	81	51.770	ENSCCAG00000022132	USB1	85	51.770	Cebus_capucinus
ENSGACG00000003257	usb1	81	52.212	ENSCATG00000032174	USB1	85	52.212	Cercocebus_atys
ENSGACG00000003257	usb1	62	50.867	ENSCLAG00000007363	USB1	85	53.691	Chinchilla_lanigera
ENSGACG00000003257	usb1	81	51.770	ENSCSAG00000004783	USB1	85	51.770	Chlorocebus_sabaeus
ENSGACG00000003257	usb1	80	53.812	ENSCPBG00000026943	USB1	80	53.812	Chrysemys_picta_bellii
ENSGACG00000003257	usb1	81	31.933	ENSCING00000011490	-	87	30.213	Ciona_intestinalis
ENSGACG00000003257	usb1	82	52.193	ENSCANG00000037135	USB1	99	47.170	Colobus_angolensis_palliatus
ENSGACG00000003257	usb1	99	48.551	ENSCGRG00001011243	USB1	84	52.232	Cricetulus_griseus_chok1gshd
ENSGACG00000003257	usb1	99	48.551	ENSCGRG00000013252	USB1	84	52.232	Cricetulus_griseus_crigri
ENSGACG00000003257	usb1	100	64.388	ENSCSEG00000013881	usb1	99	64.158	Cynoglossus_semilaevis
ENSGACG00000003257	usb1	81	71.053	ENSCVAG00000009252	usb1	98	71.053	Cyprinodon_variegatus
ENSGACG00000003257	usb1	81	57.143	ENSDARG00000003841	usb1	98	50.185	Danio_rerio
ENSGACG00000003257	usb1	99	46.014	ENSDORG00000001888	Usb1	85	50.893	Dipodomys_ordii
ENSGACG00000003257	usb1	85	40.586	FBgn0037713	CG16790	83	39.407	Drosophila_melanogaster
ENSGACG00000003257	usb1	99	41.304	ENSETEG00000019682	USB1	84	44.196	Echinops_telfairi
ENSGACG00000003257	usb1	89	43.609	ENSEBUG00000005889	usb1	89	44.747	Eptatretus_burgeri
ENSGACG00000003257	usb1	99	48.551	ENSEASG00005005484	USB1	85	52.232	Equus_asinus_asinus
ENSGACG00000003257	usb1	99	48.364	ENSECAG00000019493	USB1	77	52.018	Equus_caballus
ENSGACG00000003257	usb1	62	46.243	ENSEEUG00000000154	USB1	56	47.651	Erinaceus_europaeus
ENSGACG00000003257	usb1	88	60.729	ENSELUG00000010974	usb1	90	60.729	Esox_lucius
ENSGACG00000003257	usb1	84	49.145	ENSFCAG00000002693	USB1	93	47.791	Felis_catus
ENSGACG00000003257	usb1	83	54.113	ENSFALG00000006876	USB1	92	52.610	Ficedula_albicollis
ENSGACG00000003257	usb1	99	48.188	ENSFDAG00000010052	USB1	87	50.215	Fukomys_damarensis
ENSGACG00000003257	usb1	87	66.667	ENSFHEG00000012334	usb1	97	66.667	Fundulus_heteroclitus
ENSGACG00000003257	usb1	80	69.369	ENSGMOG00000004228	usb1	99	69.369	Gadus_morhua
ENSGACG00000003257	usb1	80	54.260	ENSGALG00000035604	USB1	88	54.464	Gallus_gallus
ENSGACG00000003257	usb1	99	68.592	ENSGAFG00000021890	usb1	99	68.231	Gambusia_affinis
ENSGACG00000003257	usb1	99	49.819	ENSGAGG00000022572	USB1	82	54.260	Gopherus_agassizii
ENSGACG00000003257	usb1	81	52.212	ENSGGOG00000017147	USB1	85	52.212	Gorilla_gorilla
ENSGACG00000003257	usb1	90	74.800	ENSHBUG00000009823	usb1	88	74.800	Haplochromis_burtoni
ENSGACG00000003257	usb1	99	48.551	ENSHGLG00000016078	USB1	82	52.018	Heterocephalus_glaber_female
ENSGACG00000003257	usb1	99	48.551	ENSHGLG00100005562	USB1	82	52.018	Heterocephalus_glaber_male
ENSGACG00000003257	usb1	79	71.101	ENSHCOG00000015633	usb1	86	71.749	Hippocampus_comes
ENSGACG00000003257	usb1	99	53.633	ENSIPUG00000008601	usb1	100	52.431	Ictalurus_punctatus
ENSGACG00000003257	usb1	81	53.125	ENSSTOG00000007548	USB1	82	53.125	Ictidomys_tridecemlineatus
ENSGACG00000003257	usb1	99	49.458	ENSJJAG00000021859	Usb1	84	53.125	Jaculus_jaculus
ENSGACG00000003257	usb1	99	65.398	ENSKMAG00000007200	usb1	99	67.143	Kryptolebias_marmoratus
ENSGACG00000003257	usb1	92	68.992	ENSLBEG00000008452	usb1	78	71.084	Labrus_bergylta
ENSGACG00000003257	usb1	82	47.391	ENSLACG00000000105	USB1	80	47.826	Latimeria_chalumnae
ENSGACG00000003257	usb1	99	49.296	ENSLOCG00000000465	usb1	99	49.296	Lepisosteus_oculatus
ENSGACG00000003257	usb1	99	42.049	ENSLAFG00000002267	USB1	84	43.478	Loxodonta_africana
ENSGACG00000003257	usb1	81	52.212	ENSMFAG00000003926	USB1	85	52.212	Macaca_fascicularis
ENSGACG00000003257	usb1	81	52.212	ENSMMUG00000022669	USB1	85	52.212	Macaca_mulatta
ENSGACG00000003257	usb1	81	51.770	ENSMNEG00000042487	USB1	85	51.770	Macaca_nemestrina
ENSGACG00000003257	usb1	81	52.212	ENSMLEG00000028756	USB1	85	52.212	Mandrillus_leucophaeus
ENSGACG00000003257	usb1	100	76.344	ENSMAMG00000015092	usb1	100	75.540	Mastacembelus_armatus
ENSGACG00000003257	usb1	90	74.000	ENSMZEG00005010008	usb1	88	74.000	Maylandia_zebra
ENSGACG00000003257	usb1	99	48.375	ENSMAUG00000007832	Usb1	84	51.339	Mesocricetus_auratus
ENSGACG00000003257	usb1	81	52.679	ENSMICG00000004900	USB1	85	52.679	Microcebus_murinus
ENSGACG00000003257	usb1	99	49.819	ENSMOCG00000022647	Usb1	84	52.232	Microtus_ochrogaster
ENSGACG00000003257	usb1	81	77.679	ENSMMOG00000000490	usb1	88	76.991	Mola_mola
ENSGACG00000003257	usb1	78	48.387	ENSMODG00000014067	USB1	84	48.661	Monodelphis_domestica
ENSGACG00000003257	usb1	99	74.377	ENSMALG00000005930	usb1	99	74.021	Monopterus_albus
ENSGACG00000003257	usb1	99	49.821	MGP_CAROLIEiJ_G0031421	Usb1	99	48.214	Mus_caroli
ENSGACG00000003257	usb1	99	48.913	ENSMUSG00000031792	Usb1	99	48.214	Mus_musculus
ENSGACG00000003257	usb1	99	48.551	MGP_PahariEiJ_G0023019	Usb1	100	49.573	Mus_pahari
ENSGACG00000003257	usb1	99	49.821	MGP_SPRETEiJ_G0032540	Usb1	97	47.692	Mus_spretus
ENSGACG00000003257	usb1	99	46.739	ENSMPUG00000004684	USB1	93	45.000	Mustela_putorius_furo
ENSGACG00000003257	usb1	81	53.125	ENSMLUG00000007400	USB1	97	53.125	Myotis_lucifugus
ENSGACG00000003257	usb1	99	49.638	ENSNGAG00000009703	Usb1	98	49.638	Nannospalax_galili
ENSGACG00000003257	usb1	90	68.651	ENSNBRG00000008747	usb1	99	72.770	Neolamprologus_brichardi
ENSGACG00000003257	usb1	74	53.140	ENSNLEG00000003340	USB1	83	53.140	Nomascus_leucogenys
ENSGACG00000003257	usb1	99	48.364	ENSODEG00000016214	USB1	84	52.444	Octodon_degus
ENSGACG00000003257	usb1	99	71.174	ENSONIG00000011063	usb1	89	74.800	Oreochromis_niloticus
ENSGACG00000003257	usb1	81	51.111	ENSOANG00000012118	USB1	94	51.111	Ornithorhynchus_anatinus
ENSGACG00000003257	usb1	99	68.841	ENSORLG00000012479	usb1	99	68.841	Oryzias_latipes
ENSGACG00000003257	usb1	86	73.529	ENSORLG00020018671	usb1	88	73.529	Oryzias_latipes_hni
ENSGACG00000003257	usb1	86	74.370	ENSORLG00015009679	usb1	88	74.370	Oryzias_latipes_hsok
ENSGACG00000003257	usb1	99	69.176	ENSOMEG00000012930	usb1	99	69.892	Oryzias_melastigma
ENSGACG00000003257	usb1	81	48.661	ENSOGAG00000003273	USB1	83	48.661	Otolemur_garnettii
ENSGACG00000003257	usb1	88	49.393	ENSOARG00000001107	USB1	95	49.393	Ovis_aries
ENSGACG00000003257	usb1	81	51.770	ENSPPAG00000042137	USB1	85	51.770	Pan_paniscus
ENSGACG00000003257	usb1	84	48.718	ENSPPRG00000024797	USB1	97	45.736	Panthera_pardus
ENSGACG00000003257	usb1	84	48.718	ENSPTIG00000007506	USB1	93	47.390	Panthera_tigris_altaica
ENSGACG00000003257	usb1	77	53.271	ENSPTRG00000008172	USB1	100	53.271	Pan_troglodytes
ENSGACG00000003257	usb1	81	52.212	ENSPANG00000025138	USB1	85	52.212	Papio_anubis
ENSGACG00000003257	usb1	81	61.333	ENSPKIG00000015109	usb1	76	61.333	Paramormyrops_kingsleyae
ENSGACG00000003257	usb1	81	42.982	ENSPSIG00000004305	USB1	100	42.982	Pelodiscus_sinensis
ENSGACG00000003257	usb1	81	64.732	ENSPMGG00000017725	usb1	86	64.732	Periophthalmus_magnuspinnatus
ENSGACG00000003257	usb1	99	47.670	ENSPEMG00000016183	Usb1	96	46.538	Peromyscus_maniculatus_bairdii
ENSGACG00000003257	usb1	80	48.889	ENSPMAG00000000462	usb1	95	48.889	Petromyzon_marinus
ENSGACG00000003257	usb1	99	69.314	ENSPFOG00000011130	usb1	99	69.314	Poecilia_formosa
ENSGACG00000003257	usb1	99	69.314	ENSPLAG00000009820	usb1	99	69.314	Poecilia_latipinna
ENSGACG00000003257	usb1	99	69.675	ENSPMEG00000006402	usb1	99	69.675	Poecilia_mexicana
ENSGACG00000003257	usb1	87	67.490	ENSPREG00000001047	usb1	98	68.724	Poecilia_reticulata
ENSGACG00000003257	usb1	75	50.476	ENSPPYG00000007401	USB1	83	50.962	Pongo_abelii
ENSGACG00000003257	usb1	81	52.232	ENSPCOG00000022612	USB1	85	52.232	Propithecus_coquereli
ENSGACG00000003257	usb1	99	46.739	ENSPVAG00000004613	USB1	86	51.339	Pteropus_vampyrus
ENSGACG00000003257	usb1	99	70.567	ENSPNYG00000022262	usb1	88	74.400	Pundamilia_nyererei
ENSGACG00000003257	usb1	81	62.500	ENSPNAG00000011736	usb1	76	62.500	Pygocentrus_nattereri
ENSGACG00000003257	usb1	99	49.462	ENSRNOG00000013216	Usb1	97	47.308	Rattus_norvegicus
ENSGACG00000003257	usb1	77	53.271	ENSRBIG00000044466	USB1	100	53.271	Rhinopithecus_bieti
ENSGACG00000003257	usb1	81	52.212	ENSRROG00000029211	USB1	85	52.212	Rhinopithecus_roxellana
ENSGACG00000003257	usb1	81	52.212	ENSSBOG00000029362	USB1	85	52.212	Saimiri_boliviensis_boliviensis
ENSGACG00000003257	usb1	78	48.387	ENSSHAG00000006993	USB1	89	49.107	Sarcophilus_harrisii
ENSGACG00000003257	usb1	90	59.684	ENSSFOG00015023663	usb1	80	59.684	Scleropages_formosus
ENSGACG00000003257	usb1	99	68.027	ENSSMAG00000015834	usb1	99	68.027	Scophthalmus_maximus
ENSGACG00000003257	usb1	81	83.408	ENSSDUG00000002949	usb1	83	83.408	Seriola_dumerili
ENSGACG00000003257	usb1	91	80.556	ENSSLDG00000014174	usb1	99	76.703	Seriola_lalandi_dorsalis
ENSGACG00000003257	usb1	77	50.935	ENSSPUG00000006741	USB1	100	50.935	Sphenodon_punctatus
ENSGACG00000003257	usb1	100	69.014	ENSSPAG00000007484	usb1	87	73.387	Stegastes_partitus
ENSGACG00000003257	usb1	99	48.551	ENSSSCG00000002807	USB1	93	49.398	Sus_scrofa
ENSGACG00000003257	usb1	76	56.398	ENSTGUG00000004792	USB1	83	56.398	Taeniopygia_guttata
ENSGACG00000003257	usb1	100	68.953	ENSTRUG00000021069	usb1	100	68.953	Takifugu_rubripes
ENSGACG00000003257	usb1	100	58.781	ENSTNIG00000000626	usb1	94	59.600	Tetraodon_nigroviridis
ENSGACG00000003257	usb1	81	37.054	ENSTBEG00000001507	USB1	97	37.054	Tupaia_belangeri
ENSGACG00000003257	usb1	99	47.464	ENSUAMG00000016823	USB1	97	46.154	Ursus_americanus
ENSGACG00000003257	usb1	77	51.869	ENSUMAG00000021369	USB1	100	51.869	Ursus_maritimus
ENSGACG00000003257	usb1	99	46.909	ENSVVUG00000023700	USB1	86	51.121	Vulpes_vulpes
ENSGACG00000003257	usb1	73	55.392	ENSXETG00000013795	usb1	89	53.125	Xenopus_tropicalis
ENSGACG00000003257	usb1	92	71.373	ENSXMAG00000024687	usb1	81	67.886	Xiphophorus_maculatus