EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000003428 (Gene tree)
Gene ID: -
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog b
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 4617 bases
Position: chrgroupV:3491748-3496364
Accession: ZDB-GENE-040426-2164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000004484	AD	PF09793.9	1.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000004498	-	1129	-	ENSGACP00000004484	158 (aa)	-	G3NGM8

Gene Model

Click here to download ENSGACG00000003428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000003428's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000003428	lsm12b	100	84.810	ENSG00000161654	LSM12	81	84.810	Homo_sapiens
ENSGACG00000003428	lsm12b	100	98.734	ENSAPOG00000007907	lsm12b	81	98.734	Acanthochromis_polyacanthus
ENSGACG00000003428	lsm12b	100	82.278	ENSAMEG00000018321	LSM12	80	82.278	Ailuropoda_melanoleuca
ENSGACG00000003428	lsm12b	100	98.101	ENSACIG00000008538	lsm12b	81	98.101	Amphilophus_citrinellus
ENSGACG00000003428	lsm12b	100	99.367	ENSAOCG00000021847	lsm12b	71	99.367	Amphiprion_ocellaris
ENSGACG00000003428	lsm12b	100	99.367	ENSAPEG00000002252	lsm12b	81	99.367	Amphiprion_percula
ENSGACG00000003428	lsm12b	100	97.468	ENSATEG00000005705	lsm12b	81	97.468	Anabas_testudineus
ENSGACG00000003428	lsm12b	100	86.076	ENSACAG00000004618	LSM12	81	86.076	Anolis_carolinensis
ENSGACG00000003428	lsm12b	100	84.810	ENSANAG00000029011	LSM12	81	84.810	Aotus_nancymaae
ENSGACG00000003428	lsm12b	100	98.734	ENSACLG00000026332	lsm12b	81	98.734	Astatotilapia_calliptera
ENSGACG00000003428	lsm12b	100	87.342	ENSAMXG00000036117	lsm12a	73	87.342	Astyanax_mexicanus
ENSGACG00000003428	lsm12b	100	93.671	ENSAMXG00000032952	lsm12b	81	93.671	Astyanax_mexicanus
ENSGACG00000003428	lsm12b	100	84.810	ENSBTAG00000016252	LSM12	81	84.810	Bos_taurus
ENSGACG00000003428	lsm12b	100	84.810	ENSCJAG00000048480	LSM12	81	84.810	Callithrix_jacchus
ENSGACG00000003428	lsm12b	100	84.810	ENSCAFG00000014379	LSM12	74	84.810	Canis_familiaris
ENSGACG00000003428	lsm12b	100	84.810	ENSCAFG00020012173	LSM12	81	84.810	Canis_lupus_dingo
ENSGACG00000003428	lsm12b	100	84.810	ENSCHIG00000018175	LSM12	81	84.810	Capra_hircus
ENSGACG00000003428	lsm12b	100	84.810	ENSTSYG00000036361	LSM12	81	84.810	Carlito_syrichta
ENSGACG00000003428	lsm12b	99	82.803	ENSCAPG00000009647	LSM12	86	82.803	Cavia_aperea
ENSGACG00000003428	lsm12b	100	84.177	ENSCPOG00000012860	LSM12	81	84.177	Cavia_porcellus
ENSGACG00000003428	lsm12b	100	84.810	ENSCCAG00000032905	LSM12	81	84.810	Cebus_capucinus
ENSGACG00000003428	lsm12b	100	84.810	ENSCATG00000030577	-	81	84.810	Cercocebus_atys
ENSGACG00000003428	lsm12b	100	84.177	ENSCLAG00000015759	LSM12	81	84.177	Chinchilla_lanigera
ENSGACG00000003428	lsm12b	100	85.443	ENSCSAG00000003486	LSM12	81	85.443	Chlorocebus_sabaeus
ENSGACG00000003428	lsm12b	69	85.321	ENSCHOG00000001198	LSM12	100	85.321	Choloepus_hoffmanni
ENSGACG00000003428	lsm12b	100	86.709	ENSCPBG00000027105	LSM12	81	86.709	Chrysemys_picta_bellii
ENSGACG00000003428	lsm12b	100	84.810	ENSCANG00000043328	LSM12	81	84.810	Colobus_angolensis_palliatus
ENSGACG00000003428	lsm12b	100	84.810	ENSCGRG00001002094	Lsm12	81	84.810	Cricetulus_griseus_chok1gshd
ENSGACG00000003428	lsm12b	97	85.065	ENSCGRG00000004316	Lsm12	87	85.065	Cricetulus_griseus_crigri
ENSGACG00000003428	lsm12b	100	98.101	ENSCSEG00000008434	lsm12b	81	98.101	Cynoglossus_semilaevis
ENSGACG00000003428	lsm12b	100	97.468	ENSCVAG00000008755	lsm12b	81	97.468	Cyprinodon_variegatus
ENSGACG00000003428	lsm12b	100	84.810	ENSDARG00000028848	lsm12a	81	84.810	Danio_rerio
ENSGACG00000003428	lsm12b	100	94.304	ENSDARG00000109510	lsm12b	81	94.304	Danio_rerio
ENSGACG00000003428	lsm12b	100	84.810	ENSDNOG00000002418	LSM12	74	84.810	Dasypus_novemcinctus
ENSGACG00000003428	lsm12b	100	84.810	ENSDORG00000016381	Lsm12	81	84.810	Dipodomys_ordii
ENSGACG00000003428	lsm12b	100	84.177	ENSETEG00000008374	LSM12	81	84.177	Echinops_telfairi
ENSGACG00000003428	lsm12b	100	75.316	ENSETEG00000011012	-	90	75.316	Echinops_telfairi
ENSGACG00000003428	lsm12b	82	64.341	ENSEBUG00000016299	lsm12a	72	64.341	Eptatretus_burgeri
ENSGACG00000003428	lsm12b	100	84.810	ENSEASG00005010155	LSM12	81	84.810	Equus_asinus_asinus
ENSGACG00000003428	lsm12b	100	84.810	ENSECAG00000009071	LSM12	81	84.810	Equus_caballus
ENSGACG00000003428	lsm12b	97	84.967	ENSEEUG00000002419	-	100	84.967	Erinaceus_europaeus
ENSGACG00000003428	lsm12b	100	92.405	ENSELUG00000000256	-	81	92.405	Esox_lucius
ENSGACG00000003428	lsm12b	100	94.937	ENSELUG00000015538	lsm12b	80	89.241	Esox_lucius
ENSGACG00000003428	lsm12b	100	84.810	ENSFCAG00000037021	LSM12	81	84.810	Felis_catus
ENSGACG00000003428	lsm12b	99	81.410	ENSFDAG00000008954	LSM12	91	81.410	Fukomys_damarensis
ENSGACG00000003428	lsm12b	100	97.468	ENSFHEG00000019913	lsm12b	81	97.468	Fundulus_heteroclitus
ENSGACG00000003428	lsm12b	100	98.101	ENSGMOG00000015449	lsm12b	100	98.101	Gadus_morhua
ENSGACG00000003428	lsm12b	97	86.275	ENSGALG00000039803	LSM12	100	86.275	Gallus_gallus
ENSGACG00000003428	lsm12b	100	97.468	ENSGAFG00000011829	lsm12b	81	97.468	Gambusia_affinis
ENSGACG00000003428	lsm12b	100	85.443	ENSGAGG00000021965	LSM12	81	85.443	Gopherus_agassizii
ENSGACG00000003428	lsm12b	100	84.810	ENSGGOG00000010589	-	81	84.810	Gorilla_gorilla
ENSGACG00000003428	lsm12b	97	98.052	ENSHBUG00000007667	lsm12b	68	98.052	Haplochromis_burtoni
ENSGACG00000003428	lsm12b	100	84.810	ENSHGLG00000011411	LSM12	81	84.810	Heterocephalus_glaber_female
ENSGACG00000003428	lsm12b	97	84.416	ENSHGLG00100000241	LSM12	82	84.416	Heterocephalus_glaber_male
ENSGACG00000003428	lsm12b	100	94.937	ENSHCOG00000002094	lsm12b	81	94.937	Hippocampus_comes
ENSGACG00000003428	lsm12b	100	93.671	ENSIPUG00000014800	lsm12	81	93.671	Ictalurus_punctatus
ENSGACG00000003428	lsm12b	99	82.051	ENSIPUG00000008936	lsm12a	79	82.051	Ictalurus_punctatus
ENSGACG00000003428	lsm12b	100	84.810	ENSSTOG00000007403	LSM12	81	84.810	Ictidomys_tridecemlineatus
ENSGACG00000003428	lsm12b	100	83.544	ENSJJAG00000004364	-	81	83.784	Jaculus_jaculus
ENSGACG00000003428	lsm12b	82	73.643	ENSJJAG00000014652	-	76	73.643	Jaculus_jaculus
ENSGACG00000003428	lsm12b	100	75.472	ENSJJAG00000011793	-	83	75.472	Jaculus_jaculus
ENSGACG00000003428	lsm12b	100	98.734	ENSLBEG00000027999	lsm12b	81	98.734	Labrus_bergylta
ENSGACG00000003428	lsm12b	100	87.342	ENSLACG00000015981	LSM12	81	87.342	Latimeria_chalumnae
ENSGACG00000003428	lsm12b	100	92.405	ENSLOCG00000013079	lsm12b	80	92.405	Lepisosteus_oculatus
ENSGACG00000003428	lsm12b	100	84.810	ENSLAFG00000005202	LSM12	81	84.810	Loxodonta_africana
ENSGACG00000003428	lsm12b	100	84.810	ENSMFAG00000031376	LSM12	81	84.810	Macaca_fascicularis
ENSGACG00000003428	lsm12b	55	74.713	ENSMMUG00000038408	-	79	74.713	Macaca_mulatta
ENSGACG00000003428	lsm12b	100	84.810	ENSMMUG00000006804	LSM12	81	84.810	Macaca_mulatta
ENSGACG00000003428	lsm12b	55	74.713	ENSMMUG00000042106	-	79	74.713	Macaca_mulatta
ENSGACG00000003428	lsm12b	100	84.810	ENSMNEG00000030594	-	81	84.810	Macaca_nemestrina
ENSGACG00000003428	lsm12b	100	84.810	ENSMLEG00000039934	LSM12	81	84.810	Mandrillus_leucophaeus
ENSGACG00000003428	lsm12b	100	98.734	ENSMAMG00000004279	lsm12b	81	98.734	Mastacembelus_armatus
ENSGACG00000003428	lsm12b	100	98.734	ENSMZEG00005005754	lsm12b	81	98.734	Maylandia_zebra
ENSGACG00000003428	lsm12b	100	85.443	ENSMICG00000037219	LSM12	81	85.586	Microcebus_murinus
ENSGACG00000003428	lsm12b	100	71.519	ENSMOCG00000017015	-	69	71.519	Microtus_ochrogaster
ENSGACG00000003428	lsm12b	100	84.810	ENSMOCG00000019878	-	81	84.810	Microtus_ochrogaster
ENSGACG00000003428	lsm12b	100	98.734	ENSMMOG00000020848	lsm12b	81	98.734	Mola_mola
ENSGACG00000003428	lsm12b	100	99.367	ENSMALG00000007578	lsm12b	81	99.367	Monopterus_albus
ENSGACG00000003428	lsm12b	100	84.177	MGP_CAROLIEiJ_G0017241	Lsm12	81	84.177	Mus_caroli
ENSGACG00000003428	lsm12b	100	84.810	ENSMUSG00000020922	Lsm12	81	84.810	Mus_musculus
ENSGACG00000003428	lsm12b	100	76.571	MGP_PahariEiJ_G0018371	Lsm12	81	84.685	Mus_pahari
ENSGACG00000003428	lsm12b	100	84.177	MGP_SPRETEiJ_G0018084	Lsm12	81	84.177	Mus_spretus
ENSGACG00000003428	lsm12b	100	85.443	ENSMLUG00000006391	LSM12	81	85.443	Myotis_lucifugus
ENSGACG00000003428	lsm12b	96	63.816	ENSNGAG00000015429	-	77	63.816	Nannospalax_galili
ENSGACG00000003428	lsm12b	100	84.810	ENSNGAG00000001870	Lsm12	81	84.810	Nannospalax_galili
ENSGACG00000003428	lsm12b	100	98.734	ENSNBRG00000006266	lsm12b	81	98.734	Neolamprologus_brichardi
ENSGACG00000003428	lsm12b	100	84.810	ENSNLEG00000005580	-	81	84.810	Nomascus_leucogenys
ENSGACG00000003428	lsm12b	81	84.375	ENSMEUG00000007501	-	78	84.375	Notamacropus_eugenii
ENSGACG00000003428	lsm12b	100	84.810	ENSOPRG00000008552	LSM12	81	84.810	Ochotona_princeps
ENSGACG00000003428	lsm12b	100	77.215	ENSODEG00000007886	-	61	77.215	Octodon_degus
ENSGACG00000003428	lsm12b	100	85.443	ENSODEG00000017998	-	81	85.586	Octodon_degus
ENSGACG00000003428	lsm12b	100	98.734	ENSONIG00000007933	lsm12b	81	98.734	Oreochromis_niloticus
ENSGACG00000003428	lsm12b	51	80.247	ENSOANG00000031724	-	100	80.247	Ornithorhynchus_anatinus
ENSGACG00000003428	lsm12b	99	79.618	ENSOCUG00000021254	-	81	79.618	Oryctolagus_cuniculus
ENSGACG00000003428	lsm12b	99	78.344	ENSOCUG00000024823	-	81	78.344	Oryctolagus_cuniculus
ENSGACG00000003428	lsm12b	99	80.892	ENSOCUG00000027889	-	81	80.892	Oryctolagus_cuniculus
ENSGACG00000003428	lsm12b	100	82.278	ENSOCUG00000008566	-	80	82.278	Oryctolagus_cuniculus
ENSGACG00000003428	lsm12b	100	96.835	ENSORLG00000011310	lsm12b	81	96.835	Oryzias_latipes
ENSGACG00000003428	lsm12b	100	96.835	ENSORLG00020002060	lsm12b	74	96.835	Oryzias_latipes_hni
ENSGACG00000003428	lsm12b	100	96.835	ENSORLG00015001647	lsm12b	74	96.835	Oryzias_latipes_hsok
ENSGACG00000003428	lsm12b	100	98.101	ENSOMEG00000006184	lsm12b	74	98.101	Oryzias_melastigma
ENSGACG00000003428	lsm12b	100	85.443	ENSOGAG00000010489	LSM12	81	85.443	Otolemur_garnettii
ENSGACG00000003428	lsm12b	100	82.278	ENSOARG00000006589	LSM12	79	82.278	Ovis_aries
ENSGACG00000003428	lsm12b	97	84.967	ENSPPAG00000034974	-	83	84.967	Pan_paniscus
ENSGACG00000003428	lsm12b	100	84.810	ENSPPRG00000023420	LSM12	81	84.810	Panthera_pardus
ENSGACG00000003428	lsm12b	70	82.883	ENSPTIG00000014850	-	81	82.883	Panthera_tigris_altaica
ENSGACG00000003428	lsm12b	97	84.967	ENSPTIG00000012704	-	82	84.967	Panthera_tigris_altaica
ENSGACG00000003428	lsm12b	100	84.810	ENSPTRG00000009261	LSM12	81	84.810	Pan_troglodytes
ENSGACG00000003428	lsm12b	100	84.810	ENSPANG00000021315	-	81	84.810	Papio_anubis
ENSGACG00000003428	lsm12b	100	82.278	ENSPKIG00000017932	-	81	82.278	Paramormyrops_kingsleyae
ENSGACG00000003428	lsm12b	100	93.038	ENSPKIG00000021058	lsm12b	81	93.038	Paramormyrops_kingsleyae
ENSGACG00000003428	lsm12b	100	98.101	ENSPMGG00000021344	lsm12b	81	98.101	Periophthalmus_magnuspinnatus
ENSGACG00000003428	lsm12b	100	84.810	ENSPEMG00000012199	Lsm12	81	84.810	Peromyscus_maniculatus_bairdii
ENSGACG00000003428	lsm12b	87	68.613	ENSPMAG00000005461	lsm12a	79	68.613	Petromyzon_marinus
ENSGACG00000003428	lsm12b	100	84.810	ENSPCIG00000020244	LSM12	81	84.810	Phascolarctos_cinereus
ENSGACG00000003428	lsm12b	100	96.203	ENSPFOG00000015930	lsm12b	81	96.203	Poecilia_formosa
ENSGACG00000003428	lsm12b	100	96.203	ENSPLAG00000021089	lsm12b	81	96.203	Poecilia_latipinna
ENSGACG00000003428	lsm12b	100	96.203	ENSPMEG00000012961	lsm12b	81	96.203	Poecilia_mexicana
ENSGACG00000003428	lsm12b	100	97.468	ENSPREG00000010236	lsm12b	88	97.468	Poecilia_reticulata
ENSGACG00000003428	lsm12b	100	84.810	ENSPPYG00000008344	LSM12	81	84.810	Pongo_abelii
ENSGACG00000003428	lsm12b	81	85.938	ENSPCAG00000008790	LSM12	81	85.938	Procavia_capensis
ENSGACG00000003428	lsm12b	100	84.810	ENSPCOG00000027951	LSM12	81	84.810	Propithecus_coquereli
ENSGACG00000003428	lsm12b	100	85.443	ENSPVAG00000013706	LSM12	81	85.443	Pteropus_vampyrus
ENSGACG00000003428	lsm12b	100	98.734	ENSPNYG00000003386	lsm12b	81	98.734	Pundamilia_nyererei
ENSGACG00000003428	lsm12b	100	94.937	ENSPNAG00000004186	lsm12b	81	94.937	Pygocentrus_nattereri
ENSGACG00000003428	lsm12b	100	87.342	ENSPNAG00000018435	lsm12a	81	87.342	Pygocentrus_nattereri
ENSGACG00000003428	lsm12b	100	84.810	ENSRNOG00000020894	Lsm12	81	84.810	Rattus_norvegicus
ENSGACG00000003428	lsm12b	100	84.810	ENSRBIG00000027910	LSM12	81	84.810	Rhinopithecus_bieti
ENSGACG00000003428	lsm12b	73	74.138	ENSRROG00000000537	-	80	74.138	Rhinopithecus_roxellana
ENSGACG00000003428	lsm12b	100	84.810	ENSRROG00000045530	-	81	84.810	Rhinopithecus_roxellana
ENSGACG00000003428	lsm12b	75	32.061	YHR121W	-	68	32.061	Saccharomyces_cerevisiae
ENSGACG00000003428	lsm12b	100	84.810	ENSSBOG00000025310	LSM12	81	84.810	Saimiri_boliviensis_boliviensis
ENSGACG00000003428	lsm12b	100	83.544	ENSSHAG00000014914	LSM12	100	83.544	Sarcophilus_harrisii
ENSGACG00000003428	lsm12b	100	94.937	ENSSFOG00015009612	lsm12	81	94.937	Scleropages_formosus
ENSGACG00000003428	lsm12b	100	93.038	ENSSFOG00015020392	lsm12a	81	93.038	Scleropages_formosus
ENSGACG00000003428	lsm12b	100	99.367	ENSSMAG00000008089	lsm12b	81	99.367	Scophthalmus_maximus
ENSGACG00000003428	lsm12b	100	98.734	ENSSDUG00000012711	lsm12b	81	98.734	Seriola_dumerili
ENSGACG00000003428	lsm12b	100	98.734	ENSSLDG00000007404	lsm12b	81	98.734	Seriola_lalandi_dorsalis
ENSGACG00000003428	lsm12b	97	84.314	ENSSARG00000005537	LSM12	100	84.314	Sorex_araneus
ENSGACG00000003428	lsm12b	100	86.709	ENSSPUG00000011984	LSM12	81	86.709	Sphenodon_punctatus
ENSGACG00000003428	lsm12b	100	99.367	ENSSPAG00000017058	lsm12b	81	99.367	Stegastes_partitus
ENSGACG00000003428	lsm12b	100	84.810	ENSSSCG00000032394	LSM12	81	84.810	Sus_scrofa
ENSGACG00000003428	lsm12b	100	98.734	ENSTRUG00000007121	lsm12b	81	98.734	Takifugu_rubripes
ENSGACG00000003428	lsm12b	100	96.203	ENSTNIG00000014436	lsm12b	81	96.203	Tetraodon_nigroviridis
ENSGACG00000003428	lsm12b	100	84.177	ENSTBEG00000012523	-	81	84.177	Tupaia_belangeri
ENSGACG00000003428	lsm12b	100	81.646	ENSTBEG00000012392	-	81	81.646	Tupaia_belangeri
ENSGACG00000003428	lsm12b	100	84.810	ENSTTRG00000010433	LSM12	81	84.810	Tursiops_truncatus
ENSGACG00000003428	lsm12b	100	84.810	ENSUAMG00000006313	LSM12	98	82.278	Ursus_americanus
ENSGACG00000003428	lsm12b	100	82.278	ENSUMAG00000012987	LSM12	90	82.278	Ursus_maritimus
ENSGACG00000003428	lsm12b	100	79.114	ENSVPAG00000011145	LSM12	81	79.114	Vicugna_pacos
ENSGACG00000003428	lsm12b	100	84.810	ENSVVUG00000017581	LSM12	81	84.810	Vulpes_vulpes
ENSGACG00000003428	lsm12b	100	60.759	ENSXETG00000003371	lsm12	76	60.759	Xenopus_tropicalis
ENSGACG00000003428	lsm12b	100	97.468	ENSXCOG00000003994	lsm12b	81	97.468	Xiphophorus_couchianus
ENSGACG00000003428	lsm12b	100	97.468	ENSXMAG00000020950	lsm12b	81	97.468	Xiphophorus_maculatus