EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000003527 (Gene tree)
Gene ID: -
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 2957 bases
Position: chrgroupXVI:7816464-7819420
Accession: ZDB-GENE-030131-9143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000004619	MMR_HSR1	PF01926.23	5.3e-05	1	1
ENSGACP00000004614	MMR_HSR1	PF01926.23	6.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000004628	-	759	-	ENSGACP00000004614	252 (aa)	-	G3NH07
ENSGACT00000004633	-	702	-	ENSGACP00000004619	233 (aa)	-	G3NH12

Gene Model

Click here to download ENSGACG00000003527's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000003527's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000003527	rab20	50	38.843	ENSGACG00000015479	rab11bb	56	38.843
ENSGACG00000003527	rab20	51	38.211	ENSGACG00000012006	rab30	62	38.211
ENSGACG00000003527	rab20	51	35.075	ENSGACG00000013259	rab11al	62	35.075
ENSGACG00000003527	rab20	86	31.068	ENSGACG00000014915	si:dkey-16l2.16	93	30.085
ENSGACG00000003527	rab20	98	31.092	ENSGACG00000018291	rab9b	96	31.092
ENSGACG00000003527	rab20	50	41.322	ENSGACG00000004997	rab5aa	56	41.322
ENSGACG00000003527	rab20	50	31.538	ENSGACG00000010473	RAB29	61	31.538
ENSGACG00000003527	rab20	80	30.808	ENSGACG00000001950	RAB39B	74	30.808
ENSGACG00000003527	rab20	79	31.383	ENSGACG00000017153	rab41	73	31.383
ENSGACG00000003527	rab20	79	30.319	ENSGACG00000016164	rab4a	70	30.319
ENSGACG00000003527	rab20	50	35.537	ENSGACG00000000789	rab1ba	59	35.537
ENSGACG00000003527	rab20	57	31.613	ENSGACG00000019642	-	60	35.537
ENSGACG00000003527	rab20	79	31.915	ENSGACG00000020356	rab6a	74	31.915
ENSGACG00000003527	rab20	82	32.178	ENSGACG00000009647	RAB7A	80	32.178
ENSGACG00000003527	rab20	87	34.300	ENSGACG00000013249	rab25b	80	34.300
ENSGACG00000003527	rab20	51	30.597	ENSGACG00000014905	rab2a	63	30.597
ENSGACG00000003527	rab20	80	32.984	ENSGACG00000008659	rab5c	71	32.984
ENSGACG00000003527	rab20	55	34.848	ENSGACG00000013401	zgc:171927	64	34.848
ENSGACG00000003527	rab20	59	34.722	ENSGACG00000007722	rab15	86	34.722
ENSGACG00000003527	rab20	79	30.256	ENSGACG00000003726	rab6ba	74	30.256
ENSGACG00000003527	rab20	50	36.364	ENSGACG00000013297	-	55	36.364
ENSGACG00000003527	rab20	54	38.462	ENSGACG00000005608	rab22a	66	38.462
ENSGACG00000003527	rab20	79	34.555	ENSGACG00000016799	-	91	34.555
ENSGACG00000003527	rab20	88	31.797	ENSGACG00000000807	-	87	31.797
ENSGACG00000003527	rab20	50	39.669	ENSGACG00000006162	-	55	39.669
ENSGACG00000003527	rab20	50	35.537	ENSGACG00000003864	rab1ab	60	35.537
ENSGACG00000003527	rab20	52	33.088	ENSGACG00000011190	rab34a	51	33.088
ENSGACG00000003527	rab20	84	30.732	ENSGACG00000014578	RAB9A	85	30.732
ENSGACG00000003527	rab20	85	30.882	ENSGACG00000011925	rab13	90	30.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000003527	rab20	100	82.625	ENSATEG00000011117	rab20	100	82.625	Anabas_testudineus
ENSGACG00000003527	rab20	100	65.532	ENSAPLG00000011744	RAB20	99	65.532	Anas_platyrhynchos
ENSGACG00000003527	rab20	99	63.136	ENSACAG00000014045	RAB20	99	63.136	Anolis_carolinensis
ENSGACG00000003527	rab20	100	67.200	ENSAMXG00000003504	rab20	99	67.200	Astyanax_mexicanus
ENSGACG00000003527	rab20	99	65.678	ENSCPBG00000005866	RAB20	99	65.678	Chrysemys_picta_bellii
ENSGACG00000003527	rab20	99	84.979	ENSCSEG00000011160	rab20	100	84.979	Cynoglossus_semilaevis
ENSGACG00000003527	rab20	99	74.902	ENSDARG00000005049	rab20	97	74.902	Danio_rerio
ENSGACG00000003527	rab20	100	80.385	ENSELUG00000004092	rab20	98	80.385	Esox_lucius
ENSGACG00000003527	rab20	100	66.245	ENSFALG00000004409	RAB20	99	66.245	Ficedula_albicollis
ENSGACG00000003527	rab20	100	82.745	ENSHCOG00000013468	rab20	98	82.745	Hippocampus_comes
ENSGACG00000003527	rab20	100	73.554	ENSIPUG00000018288	RAB20	97	74.380	Ictalurus_punctatus
ENSGACG00000003527	rab20	100	73.554	ENSIPUG00000000432	RAB20	97	74.380	Ictalurus_punctatus
ENSGACG00000003527	rab20	99	67.782	ENSLACG00000011001	RAB20	99	67.782	Latimeria_chalumnae
ENSGACG00000003527	rab20	100	85.271	ENSMAMG00000015214	rab20	98	85.271	Mastacembelus_armatus
ENSGACG00000003527	rab20	100	83.750	ENSMMOG00000020022	rab20	100	83.750	Mola_mola
ENSGACG00000003527	rab20	100	63.445	ENSMEUG00000009442	RAB20	99	63.445	Notamacropus_eugenii
ENSGACG00000003527	rab20	84	53.110	ENSPMAG00000004439	rab20	98	53.110	Petromyzon_marinus
ENSGACG00000003527	rab20	100	72.653	ENSPNAG00000008867	rab20	99	74.286	Pygocentrus_nattereri
ENSGACG00000003527	rab20	100	84.436	ENSSMAG00000018818	rab20	100	84.436	Scophthalmus_maximus
ENSGACG00000003527	rab20	100	86.873	ENSSDUG00000005148	rab20	98	86.873	Seriola_dumerili
ENSGACG00000003527	rab20	100	66.102	ENSTGUG00000008797	RAB20	99	66.102	Taeniopygia_guttata
ENSGACG00000003527	rab20	100	81.467	ENSTRUG00000022951	rab20	98	81.467	Takifugu_rubripes
ENSGACG00000003527	rab20	94	83.333	ENSTNIG00000013920	rab20	100	81.857	Tetraodon_nigroviridis