EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGACG00000003572 (Gene tree)
Gene ID
-
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein%2C cytoplasmic 1a
Gene Type
protein_coding
Species
Gasterosteus_aculeatus
Status
putative
Strand
Minus strand
Length
4939 bases
Position
chrgroupXX:1337880-1342818
Accession
ZDB-GENE-030131-3238
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGACP00000004681PABPPF00658.185e-3211
ENSGACP00000004697PABPPF00658.185.1e-3211
ENSGACP00000004681RRM_5PF13893.61e-0711
ENSGACP00000004697RRM_5PF13893.61.1e-0711
ENSGACP00000004681RRM_1PF00076.222.4e-9214
ENSGACP00000004681RRM_1PF00076.222.4e-9224
ENSGACP00000004681RRM_1PF00076.222.4e-9234
ENSGACP00000004681RRM_1PF00076.222.4e-9244
ENSGACP00000004697RRM_1PF00076.222.7e-9214
ENSGACP00000004697RRM_1PF00076.222.7e-9224
ENSGACP00000004697RRM_1PF00076.222.7e-9234
ENSGACP00000004697RRM_1PF00076.222.7e-9244
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGACT00000004711-2887-ENSGACP00000004697646 (aa)-G3NH89
ENSGACT00000004695-2887-ENSGACP00000004681635 (aa)-G3NH73
Gene Model
Click here to download ENSGACG00000003572's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000003572's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGACG00000003572pabpc1a10088.682ENSGACG00000003771pabpc1b10088.837
ENSGACG00000003572pabpc1a5731.977ENSGACG00000019028rbm14b7131.977
ENSGACG00000003572pabpc1a5936.145ENSGACG00000011152elavl48936.145
ENSGACG00000003572pabpc1a5937.349ENSGACG00000013839elavl39237.349
ENSGACG00000003572pabpc1a5630.726ENSGACG00000012612rbm285630.726
ENSGACG00000003572pabpc1a5834.667ENSGACG00000009462rbm197534.667
ENSGACG00000003572pabpc1a5937.349ENSGACG00000019484elavl29237.349
ENSGACG00000003572pabpc1a5633.735ENSGACG00000008970ncl5133.735
ENSGACG00000003572pabpc1a9868.730ENSGACG00000002792pabpc1l10068.730
ENSGACG00000003572pabpc1a6041.463ENSGACG00000002797rbm39b5141.026
ENSGACG00000003572pabpc1a9974.883ENSGACG00000007179pabpc410075.351
ENSGACG00000003572pabpc1a5639.744ENSGACG00000013329-8539.759
ENSGACG00000003572pabpc1a7130.220ENSGACG00000013294-9430.220
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGACG00000003572pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSGACG00000003572pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSGACG00000003572pabpc1a10097.795ENSAPOG00000015105pabpc1a10097.795Acanthochromis_polyacanthus
ENSGACG00000003572pabpc1a10091.066ENSAPOG00000017776pabpc1b10091.066Acanthochromis_polyacanthus
ENSGACG00000003572pabpc1a5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSGACG00000003572pabpc1a10097.480ENSACIG00000004685pabpc1a10097.480Amphilophus_citrinellus
ENSGACG00000003572pabpc1a10086.698ENSACIG00000018366pabpc1b10086.698Amphilophus_citrinellus
ENSGACG00000003572pabpc1a10097.795ENSAOCG00000011656pabpc1a10097.795Amphiprion_ocellaris
ENSGACG00000003572pabpc1a10091.223ENSAOCG00000019839pabpc1b10091.223Amphiprion_ocellaris
ENSGACG00000003572pabpc1a10097.795ENSAPEG00000006963pabpc1a10097.795Amphiprion_percula
ENSGACG00000003572pabpc1a10091.223ENSAPEG00000010435pabpc1b10091.223Amphiprion_percula
ENSGACG00000003572pabpc1a10097.795ENSATEG00000024852pabpc1a10097.795Anabas_testudineus
ENSGACG00000003572pabpc1a10089.671ENSATEG00000012917pabpc1b10089.984Anabas_testudineus
ENSGACG00000003572pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSGACG00000003572pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSGACG00000003572pabpc1a10097.480ENSACLG00000009399pabpc1a10097.480Astatotilapia_calliptera
ENSGACG00000003572pabpc1a10089.655ENSACLG00000014335pabpc1b10089.655Astatotilapia_calliptera
ENSGACG00000003572pabpc1a10090.282ENSAMXG00000008599pabpc1b10090.282Astyanax_mexicanus
ENSGACG00000003572pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSGACG00000003572pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSGACG00000003572pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSGACG00000003572pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSGACG00000003572pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSGACG00000003572pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSGACG00000003572pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSGACG00000003572pabpc1a5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSGACG00000003572pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSGACG00000003572pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSGACG00000003572pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSGACG00000003572pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSGACG00000003572pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSGACG00000003572pabpc1a5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSGACG00000003572pabpc1a5780.110ENSCGRG00001023387-9677.835Cricetulus_griseus_chok1gshd
ENSGACG00000003572pabpc1a9997.785ENSCSEG00000013324pabpc1a10097.785Cynoglossus_semilaevis
ENSGACG00000003572pabpc1a10089.498ENSCSEG00000015241-10089.498Cynoglossus_semilaevis
ENSGACG00000003572pabpc1a10097.795ENSCVAG00000021872pabpc1a10097.795Cyprinodon_variegatus
ENSGACG00000003572pabpc1a10088.263ENSCVAG00000005489pabpc1b10088.263Cyprinodon_variegatus
ENSGACG00000003572pabpc1a10089.185ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSGACG00000003572pabpc1a10091.536ENSDARG00000017219pabpc1a10091.536Danio_rerio
ENSGACG00000003572pabpc1a5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSGACG00000003572pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSGACG00000003572pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSGACG00000003572pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSGACG00000003572pabpc1a5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSGACG00000003572pabpc1a9994.182ENSELUG00000003614pabpc1a10094.182Esox_lucius
ENSGACG00000003572pabpc1a10089.062ENSELUG00000015062-10089.062Esox_lucius
ENSGACG00000003572pabpc1a5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSGACG00000003572pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSGACG00000003572pabpc1a5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSGACG00000003572pabpc1a10089.185ENSFHEG00000008186pabpc1b10089.498Fundulus_heteroclitus
ENSGACG00000003572pabpc1a10097.795ENSFHEG00000018979pabpc1a10097.795Fundulus_heteroclitus
ENSGACG00000003572pabpc1a10081.550ENSGMOG00000002448-10081.550Gadus_morhua
ENSGACG00000003572pabpc1a9995.827ENSGMOG00000013448pabpc1a9995.827Gadus_morhua
ENSGACG00000003572pabpc1a10097.165ENSGAFG00000019750pabpc1a10097.165Gambusia_affinis
ENSGACG00000003572pabpc1a10090.282ENSGAFG00000010193pabpc1b10090.439Gambusia_affinis
ENSGACG00000003572pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSGACG00000003572pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSGACG00000003572pabpc1a10089.655ENSHBUG00000002075pabpc1b10089.655Haplochromis_burtoni
ENSGACG00000003572pabpc1a10097.480ENSHBUG00000020487pabpc1a10097.480Haplochromis_burtoni
ENSGACG00000003572pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSGACG00000003572pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSGACG00000003572pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSGACG00000003572pabpc1a9870.000ENSHCOG00000003175pabpc1b9970.000Hippocampus_comes
ENSGACG00000003572pabpc1a10097.323ENSHCOG00000013502pabpc1a10097.323Hippocampus_comes
ENSGACG00000003572pabpc1a10090.236ENSIPUG00000008848pabpc1a10090.236Ictalurus_punctatus
ENSGACG00000003572pabpc1a7855.224ENSIPUG00000018724-8455.224Ictalurus_punctatus
ENSGACG00000003572pabpc1a10084.458ENSIPUG00000010791-10084.458Ictalurus_punctatus
ENSGACG00000003572pabpc1a7554.886ENSIPUG00000021244-6952.941Ictalurus_punctatus
ENSGACG00000003572pabpc1a5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSGACG00000003572pabpc1a5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSGACG00000003572pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSGACG00000003572pabpc1a10097.953ENSKMAG00000000605pabpc1a10097.953Kryptolebias_marmoratus
ENSGACG00000003572pabpc1a10088.679ENSKMAG00000008049pabpc1b10088.836Kryptolebias_marmoratus
ENSGACG00000003572pabpc1a10098.583ENSLBEG00000024002-10098.583Labrus_bergylta
ENSGACG00000003572pabpc1a10090.125ENSLBEG00000026845pabpc1b10090.125Labrus_bergylta
ENSGACG00000003572pabpc1a5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSGACG00000003572pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSGACG00000003572pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSGACG00000003572pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSGACG00000003572pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSGACG00000003572pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSGACG00000003572pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSGACG00000003572pabpc1a10097.795ENSMAMG00000004502-10097.795Mastacembelus_armatus
ENSGACG00000003572pabpc1a10089.498ENSMAMG00000014610pabpc1b10089.498Mastacembelus_armatus
ENSGACG00000003572pabpc1a10097.480ENSMZEG00005025416pabpc1a10097.480Maylandia_zebra
ENSGACG00000003572pabpc1a10089.655ENSMZEG00005026745pabpc1b10089.655Maylandia_zebra
ENSGACG00000003572pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSGACG00000003572pabpc1a10084.929ENSMMOG00000018009pabpc1b10084.929Mola_mola
ENSGACG00000003572pabpc1a10095.469ENSMMOG00000018044pabpc1a10095.469Mola_mola
ENSGACG00000003572pabpc1a9873.003ENSMODG00000013156-9873.248Monodelphis_domestica
ENSGACG00000003572pabpc1a9966.144ENSMODG00000015024-9966.144Monodelphis_domestica
ENSGACG00000003572pabpc1a10083.673ENSMALG00000006066pabpc1b10085.400Monopterus_albus
ENSGACG00000003572pabpc1a10097.323ENSMALG00000013020-10097.323Monopterus_albus
ENSGACG00000003572pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSGACG00000003572pabpc1a10097.323ENSNBRG00000003068-10097.323Neolamprologus_brichardi
ENSGACG00000003572pabpc1a10089.655ENSNBRG00000013737pabpc1b10089.655Neolamprologus_brichardi
ENSGACG00000003572pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSGACG00000003572pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSGACG00000003572pabpc1a10096.535ENSONIG00000006871-10096.535Oreochromis_niloticus
ENSGACG00000003572pabpc1a10089.498ENSONIG00000002717pabpc1b10089.498Oreochromis_niloticus
ENSGACG00000003572pabpc1a5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSGACG00000003572pabpc1a10096.220ENSORLG00000002691pabpc1a10096.220Oryzias_latipes
ENSGACG00000003572pabpc1a10084.458ENSORLG00000003008-10084.458Oryzias_latipes
ENSGACG00000003572pabpc1a10096.378ENSORLG00020022398pabpc1a10096.378Oryzias_latipes_hni
ENSGACG00000003572pabpc1a10084.458ENSORLG00020022259-10084.458Oryzias_latipes_hni
ENSGACG00000003572pabpc1a10096.220ENSORLG00015013633pabpc110096.220Oryzias_latipes_hsok
ENSGACG00000003572pabpc1a10084.772ENSORLG00015010932-10084.772Oryzias_latipes_hsok
ENSGACG00000003572pabpc1a10097.165ENSOMEG00000020219pabpc1a10097.165Oryzias_melastigma
ENSGACG00000003572pabpc1a9481.236ENSOMEG00000013627pabpc1b10081.236Oryzias_melastigma
ENSGACG00000003572pabpc1a5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSGACG00000003572pabpc1a5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSGACG00000003572pabpc1a5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSGACG00000003572pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSGACG00000003572pabpc1a5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSGACG00000003572pabpc1a5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSGACG00000003572pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSGACG00000003572pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSGACG00000003572pabpc1a10090.282ENSPKIG00000005676pabpc1b10090.282Paramormyrops_kingsleyae
ENSGACG00000003572pabpc1a7092.377ENSPMGG00000023134-9792.377Periophthalmus_magnuspinnatus
ENSGACG00000003572pabpc1a7097.753ENSPMGG00000022487pabpc1a9297.753Periophthalmus_magnuspinnatus
ENSGACG00000003572pabpc1a9971.949ENSPCIG00000016995-5571.949Phascolarctos_cinereus
ENSGACG00000003572pabpc1a10089.812ENSPFOG00000005917pabpc1b10089.969Poecilia_formosa
ENSGACG00000003572pabpc1a10096.605ENSPFOG00000010815pabpc1a10096.605Poecilia_formosa
ENSGACG00000003572pabpc1a10090.125ENSPLAG00000001388pabpc1b10090.282Poecilia_latipinna
ENSGACG00000003572pabpc1a10098.110ENSPLAG00000004114pabpc1a10098.110Poecilia_latipinna
ENSGACG00000003572pabpc1a10089.812ENSPMEG00000014399pabpc1b10089.969Poecilia_mexicana
ENSGACG00000003572pabpc1a10098.110ENSPMEG00000001334pabpc1a10098.110Poecilia_mexicana
ENSGACG00000003572pabpc1a10090.125ENSPREG00000010911pabpc1b10090.282Poecilia_reticulata
ENSGACG00000003572pabpc1a10094.852ENSPREG00000019595pabpc1a10095.642Poecilia_reticulata
ENSGACG00000003572pabpc1a5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSGACG00000003572pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSGACG00000003572pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSGACG00000003572pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSGACG00000003572pabpc1a10089.655ENSPNYG00000012578pabpc1b10089.655Pundamilia_nyererei
ENSGACG00000003572pabpc1a10097.480ENSPNYG00000005192pabpc1a10097.480Pundamilia_nyererei
ENSGACG00000003572pabpc1a10091.680ENSPNAG00000028408pabpc1a10091.680Pygocentrus_nattereri
ENSGACG00000003572pabpc1a10089.655ENSPNAG00000024626pabpc1b10089.655Pygocentrus_nattereri
ENSGACG00000003572pabpc1a9188.967ENSRBIG00000028738-9588.967Rhinopithecus_bieti
ENSGACG00000003572pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSGACG00000003572pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSGACG00000003572pabpc1a9863.782ENSSHAG00000000511-10063.782Sarcophilus_harrisii
ENSGACG00000003572pabpc1a6978.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSGACG00000003572pabpc1a10090.267ENSSFOG00015002752-10090.267Scleropages_formosus
ENSGACG00000003572pabpc1a10089.796ENSSFOG00015006662pabpc1a10089.953Scleropages_formosus
ENSGACG00000003572pabpc1a10089.498ENSSMAG00000006869pabpc1b10089.498Scophthalmus_maximus
ENSGACG00000003572pabpc1a10098.110ENSSMAG00000010803pabpc1a10098.110Scophthalmus_maximus
ENSGACG00000003572pabpc1a10088.401ENSSDUG00000011965pabpc1b10088.558Seriola_dumerili
ENSGACG00000003572pabpc1a10097.795ENSSDUG00000006675pabpc1a10097.795Seriola_dumerili
ENSGACG00000003572pabpc1a10097.795ENSSLDG00000011661pabpc1a10097.795Seriola_lalandi_dorsalis
ENSGACG00000003572pabpc1a10090.047ENSSLDG00000014156pabpc1b10090.202Seriola_lalandi_dorsalis
ENSGACG00000003572pabpc1a10097.795ENSSPAG00000014453-10097.795Stegastes_partitus
ENSGACG00000003572pabpc1a10090.752ENSSPAG00000019265pabpc1b10090.752Stegastes_partitus
ENSGACG00000003572pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSGACG00000003572pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSGACG00000003572pabpc1a10095.283ENSTRUG00000011577-10095.912Takifugu_rubripes
ENSGACG00000003572pabpc1a10086.698ENSTRUG00000003767-10087.324Takifugu_rubripes
ENSGACG00000003572pabpc1a10087.383ENSTNIG00000009153pabpc1b10087.383Tetraodon_nigroviridis
ENSGACG00000003572pabpc1a10091.938ENSTNIG00000013307pabpc1a10092.558Tetraodon_nigroviridis
ENSGACG00000003572pabpc1a5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSGACG00000003572pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSGACG00000003572pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSGACG00000003572pabpc1a9754.286ENSUMAG00000023926-8969.613Ursus_maritimus
ENSGACG00000003572pabpc1a5879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSGACG00000003572pabpc1a9744.988ENSXETG00000015439-9744.931Xenopus_tropicalis
ENSGACG00000003572pabpc1a10091.811ENSXCOG00000017066pabpc1a10091.811Xiphophorus_couchianus
ENSGACG00000003572pabpc1a10085.893ENSXCOG00000019901pabpc1b10085.893Xiphophorus_couchianus
ENSGACG00000003572pabpc1a10097.795ENSXMAG00000002555pabpc1a10097.795Xiphophorus_maculatus
ENSGACG00000003572pabpc1a10090.282ENSXMAG00000003753pabpc1b10090.439Xiphophorus_maculatus

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