EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000004170 (Gene tree)
Gene ID: -
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 4921 bases
Position: chrgroupXX:2134485-2139405
Accession: ZDB-GENE-040809-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000005489	RRM_1	PF00076.22	5.6e-18	1	1
ENSGACP00000005484	RRM_1	PF00076.22	7.5e-18	1	1
ENSGACP00000005494	RRM_1	PF00076.22	7.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000005500	-	1348	-	ENSGACP00000005484	403 (aa)	-	G3NJH3
ENSGACT00000005510	-	1400	-	ENSGACP00000005494	403 (aa)	-	G3NJH3
ENSGACT00000005505	-	1070	-	ENSGACP00000005489	339 (aa)	-	G3NJH8

Gene Model

Click here to download ENSGACG00000004170's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000004170's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000004170	rbm42	100	83.498	ENSAPOG00000015109	rbm42	100	83.990	Acanthochromis_polyacanthus
ENSGACG00000004170	rbm42	100	78.660	ENSACIG00000010771	rbm42	100	78.660	Amphilophus_citrinellus
ENSGACG00000004170	rbm42	100	83.251	ENSAOCG00000008873	rbm42	100	83.744	Amphiprion_ocellaris
ENSGACG00000004170	rbm42	100	83.251	ENSAPEG00000012051	rbm42	99	83.744	Amphiprion_percula
ENSGACG00000004170	rbm42	100	82.020	ENSATEG00000000536	rbm42	100	82.266	Anabas_testudineus
ENSGACG00000004170	rbm42	100	82.469	ENSACLG00000004988	rbm42	100	82.963	Astatotilapia_calliptera
ENSGACG00000004170	rbm42	100	70.361	ENSAMXG00000016545	rbm42	100	70.546	Astyanax_mexicanus
ENSGACG00000004170	rbm42	97	79.345	ENSCSEG00000010248	rbm42	100	79.849	Cynoglossus_semilaevis
ENSGACG00000004170	rbm42	100	76.585	ENSCVAG00000015589	rbm42	100	77.073	Cyprinodon_variegatus
ENSGACG00000004170	rbm42	100	67.476	ENSDARG00000039910	rbm42	100	68.856	Danio_rerio
ENSGACG00000004170	rbm42	95	38.757	FBgn0037342	CG2931	93	36.810	Drosophila_melanogaster
ENSGACG00000004170	rbm42	100	70.118	ENSELUG00000022403	rbm42	100	68.765	Esox_lucius
ENSGACG00000004170	rbm42	73	73.091	ENSFHEG00000006764	rbm42	91	76.923	Fundulus_heteroclitus
ENSGACG00000004170	rbm42	100	70.388	ENSGMOG00000012660	rbm42	100	68.370	Gadus_morhua
ENSGACG00000004170	rbm42	76	71.975	ENSGAFG00000009059	rbm42	99	74.359	Gambusia_affinis
ENSGACG00000004170	rbm42	100	82.222	ENSHBUG00000011141	rbm42	100	82.716	Haplochromis_burtoni
ENSGACG00000004170	rbm42	100	77.206	ENSHCOG00000021214	rbm42	100	78.240	Hippocampus_comes
ENSGACG00000004170	rbm42	100	69.690	ENSIPUG00000022365	rbm42	99	68.496	Ictalurus_punctatus
ENSGACG00000004170	rbm42	91	74.663	ENSKMAG00000015287	rbm42	99	74.933	Kryptolebias_marmoratus
ENSGACG00000004170	rbm42	100	84.975	ENSLBEG00000017547	rbm42	100	84.975	Labrus_bergylta
ENSGACG00000004170	rbm42	84	86.006	ENSLBEG00000004578	-	96	86.006	Labrus_bergylta
ENSGACG00000004170	rbm42	100	64.019	ENSLOCG00000003368	rbm42	100	64.569	Lepisosteus_oculatus
ENSGACG00000004170	rbm42	100	81.281	ENSMAMG00000006708	rbm42	100	81.773	Mastacembelus_armatus
ENSGACG00000004170	rbm42	100	82.469	ENSMZEG00005025234	rbm42	100	82.963	Maylandia_zebra
ENSGACG00000004170	rbm42	91	82.114	ENSMALG00000015720	rbm42	100	82.927	Monopterus_albus
ENSGACG00000004170	rbm42	100	81.373	ENSONIG00000008029	rbm42	100	81.863	Oreochromis_niloticus
ENSGACG00000004170	rbm42	100	61.337	ENSORLG00020022507	rbm42	100	59.122	Oryzias_latipes_hni
ENSGACG00000004170	rbm42	100	78.765	ENSORLG00015000659	rbm42	100	79.012	Oryzias_latipes_hsok
ENSGACG00000004170	rbm42	66	82.589	ENSOMEG00000014332	rbm42	100	77.612	Oryzias_melastigma
ENSGACG00000004170	rbm42	100	71.084	ENSPKIG00000015165	rbm42	100	69.952	Paramormyrops_kingsleyae
ENSGACG00000004170	rbm42	55	77.778	ENSPSIG00000013935	-	73	77.778	Pelodiscus_sinensis
ENSGACG00000004170	rbm42	99	66.168	ENSPMGG00000003569	rbm42	100	97.143	Periophthalmus_magnuspinnatus
ENSGACG00000004170	rbm42	64	55.000	ENSPMAG00000008633	rbm42	100	51.351	Petromyzon_marinus
ENSGACG00000004170	rbm42	100	73.659	ENSPFOG00000007701	rbm42	100	75.912	Poecilia_formosa
ENSGACG00000004170	rbm42	100	73.659	ENSPLAG00000009405	rbm42	100	75.669	Poecilia_latipinna
ENSGACG00000004170	rbm42	100	73.902	ENSPMEG00000010375	rbm42	100	76.156	Poecilia_mexicana
ENSGACG00000004170	rbm42	100	73.415	ENSPREG00000018102	rbm42	100	75.669	Poecilia_reticulata
ENSGACG00000004170	rbm42	100	82.469	ENSPNYG00000014460	rbm42	100	82.963	Pundamilia_nyererei
ENSGACG00000004170	rbm42	100	70.096	ENSPNAG00000009961	rbm42	100	69.617	Pygocentrus_nattereri
ENSGACG00000004170	rbm42	100	69.194	ENSSFOG00015019227	rbm42	100	69.031	Scleropages_formosus
ENSGACG00000004170	rbm42	100	82.555	ENSSMAG00000011935	rbm42	100	83.292	Scophthalmus_maximus
ENSGACG00000004170	rbm42	100	84.729	ENSSDUG00000004033	rbm42	100	85.222	Seriola_dumerili
ENSGACG00000004170	rbm42	100	76.427	ENSSLDG00000009918	rbm42	100	82.353	Seriola_lalandi_dorsalis
ENSGACG00000004170	rbm42	100	83.744	ENSSPAG00000019871	rbm42	100	84.236	Stegastes_partitus
ENSGACG00000004170	rbm42	100	76.923	ENSTRUG00000024586	-	76	75.931	Takifugu_rubripes
ENSGACG00000004170	rbm42	98	68.148	ENSTNIG00000011669	rbm42	100	66.440	Tetraodon_nigroviridis
ENSGACG00000004170	rbm42	99	62.500	ENSXETG00000017599	rbm42	100	56.064	Xenopus_tropicalis
ENSGACG00000004170	rbm42	100	72.573	ENSXMAG00000012827	rbm42	100	74.818	Xiphophorus_maculatus