EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000004181 (Gene tree)
Gene ID: -
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 7659 bases
Position: chrgroupXV:208267-215925
Accession: ZDB-GENE-040426-818
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000005615	SRP54	PF00448.22	3.7e-77	1	1
ENSGACP00000005610	SRP54	PF00448.22	4.8e-77	1	1
ENSGACP00000005668	SRP54	PF00448.22	5.8e-72	1	1
ENSGACP00000005668	SRP54_N	PF02881.19	2.8e-20	1	1
ENSGACP00000005610	SRP54_N	PF02881.19	2.9e-20	1	1
ENSGACP00000005615	SRP54_N	PF02881.19	3.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000005626	-	2278	-	ENSGACP00000005610	434 (aa)	-	G3NJU8
ENSGACT00000005684	-	1422	-	ENSGACP00000005668	426 (aa)	-	G3NK06
ENSGACT00000005631	-	2075	-	ENSGACP00000005615	504 (aa)	-	G3NJV3

Gene Model

Click here to download ENSGACG00000004181's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000004181's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000004181	srp54	100	95.437	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSGACG00000004181	srp54	100	99.206	ENSAPOG00000011314	srp54	100	99.206	Acanthochromis_polyacanthus
ENSGACG00000004181	srp54	100	95.437	ENSAMEG00000015544	SRP54	100	95.437	Ailuropoda_melanoleuca
ENSGACG00000004181	srp54	100	98.387	ENSACIG00000022831	srp54	97	97.327	Amphilophus_citrinellus
ENSGACG00000004181	srp54	100	99.206	ENSAOCG00000019401	srp54	100	99.206	Amphiprion_ocellaris
ENSGACG00000004181	srp54	100	99.206	ENSAPEG00000001977	srp54	100	99.206	Amphiprion_percula
ENSGACG00000004181	srp54	100	98.611	ENSATEG00000013877	srp54	100	98.611	Anabas_testudineus
ENSGACG00000004181	srp54	100	94.470	ENSAPLG00000010125	SRP54	95	94.726	Anas_platyrhynchos
ENSGACG00000004181	srp54	65	79.154	ENSACAG00000001124	-	100	79.154	Anolis_carolinensis
ENSGACG00000004181	srp54	100	94.841	ENSACAG00000002103	-	100	94.841	Anolis_carolinensis
ENSGACG00000004181	srp54	86	91.935	ENSACAG00000010631	-	100	91.935	Anolis_carolinensis
ENSGACG00000004181	srp54	100	95.437	ENSANAG00000022133	SRP54	100	95.437	Aotus_nancymaae
ENSGACG00000004181	srp54	100	98.810	ENSACLG00000015866	srp54	100	98.810	Astatotilapia_calliptera
ENSGACG00000004181	srp54	100	97.619	ENSAMXG00000032669	SRP54	100	97.619	Astyanax_mexicanus
ENSGACG00000004181	srp54	100	95.437	ENSBTAG00000019085	SRP54	100	95.437	Bos_taurus
ENSGACG00000004181	srp54	100	73.502	WBGene00009012	F21D5.7	100	72.490	Caenorhabditis_elegans
ENSGACG00000004181	srp54	100	95.437	ENSCJAG00000006581	SRP54	100	95.437	Callithrix_jacchus
ENSGACG00000004181	srp54	100	95.437	ENSCAFG00000013331	SRP54	100	95.437	Canis_familiaris
ENSGACG00000004181	srp54	100	95.437	ENSCAFG00020023427	SRP54	100	95.437	Canis_lupus_dingo
ENSGACG00000004181	srp54	100	95.437	ENSCHIG00000026345	SRP54	100	95.437	Capra_hircus
ENSGACG00000004181	srp54	100	83.871	ENSTSYG00000035333	-	93	83.789	Carlito_syrichta
ENSGACG00000004181	srp54	100	95.238	ENSTSYG00000002680	-	100	95.238	Carlito_syrichta
ENSGACG00000004181	srp54	94	62.041	ENSCAPG00000008780	SRP54	100	62.041	Cavia_aperea
ENSGACG00000004181	srp54	100	95.040	ENSCPOG00000003691	SRP54	100	95.040	Cavia_porcellus
ENSGACG00000004181	srp54	90	95.000	ENSCCAG00000024179	SRP54	100	95.227	Cebus_capucinus
ENSGACG00000004181	srp54	100	95.437	ENSCATG00000034083	SRP54	100	95.437	Cercocebus_atys
ENSGACG00000004181	srp54	100	95.437	ENSCLAG00000015076	SRP54	100	95.437	Chinchilla_lanigera
ENSGACG00000004181	srp54	100	95.437	ENSCSAG00000015575	SRP54	100	95.437	Chlorocebus_sabaeus
ENSGACG00000004181	srp54	100	82.949	ENSCHOG00000008986	SRP54	100	84.200	Choloepus_hoffmanni
ENSGACG00000004181	srp54	100	95.437	ENSCPBG00000026195	SRP54	100	95.437	Chrysemys_picta_bellii
ENSGACG00000004181	srp54	100	83.871	ENSCING00000007380	-	100	81.944	Ciona_intestinalis
ENSGACG00000004181	srp54	100	95.437	ENSCANG00000028532	SRP54	100	95.437	Colobus_angolensis_palliatus
ENSGACG00000004181	srp54	100	95.437	ENSCGRG00001009525	-	100	95.437	Cricetulus_griseus_chok1gshd
ENSGACG00000004181	srp54	89	96.104	ENSCGRG00000009453	-	89	96.104	Cricetulus_griseus_crigri
ENSGACG00000004181	srp54	100	98.214	ENSCSEG00000012392	srp54	100	98.214	Cynoglossus_semilaevis
ENSGACG00000004181	srp54	100	98.810	ENSCVAG00000010395	srp54	100	98.810	Cyprinodon_variegatus
ENSGACG00000004181	srp54	100	98.413	ENSDARG00000098367	srp54	100	98.413	Danio_rerio
ENSGACG00000004181	srp54	100	95.437	ENSDNOG00000032525	SRP54	100	95.437	Dasypus_novemcinctus
ENSGACG00000004181	srp54	100	81.499	ENSDORG00000005159	-	98	80.088	Dipodomys_ordii
ENSGACG00000004181	srp54	100	79.493	FBgn0010747	Srp54k	98	78.514	Drosophila_melanogaster
ENSGACG00000004181	srp54	83	55.981	ENSETEG00000012102	-	99	55.981	Echinops_telfairi
ENSGACG00000004181	srp54	100	94.246	ENSETEG00000016307	-	100	94.246	Echinops_telfairi
ENSGACG00000004181	srp54	100	90.553	ENSEBUG00000009437	-	100	88.095	Eptatretus_burgeri
ENSGACG00000004181	srp54	100	95.437	ENSEASG00005002057	SRP54	100	95.437	Equus_asinus_asinus
ENSGACG00000004181	srp54	100	95.161	ENSECAG00000018042	SRP54	98	95.181	Equus_caballus
ENSGACG00000004181	srp54	100	79.563	ENSEEUG00000001511	SRP54	100	79.563	Erinaceus_europaeus
ENSGACG00000004181	srp54	100	97.222	ENSELUG00000003395	srp54	100	97.222	Esox_lucius
ENSGACG00000004181	srp54	100	95.238	ENSFCAG00000032033	SRP54	100	95.238	Felis_catus
ENSGACG00000004181	srp54	100	95.040	ENSFALG00000005995	SRP54	100	95.040	Ficedula_albicollis
ENSGACG00000004181	srp54	100	95.437	ENSFDAG00000016767	SRP54	100	95.437	Fukomys_damarensis
ENSGACG00000004181	srp54	100	99.309	ENSFHEG00000004263	srp54	100	99.206	Fundulus_heteroclitus
ENSGACG00000004181	srp54	95	92.259	ENSGMOG00000011391	srp54	100	92.259	Gadus_morhua
ENSGACG00000004181	srp54	100	95.040	ENSGALG00000023135	SRP54	100	95.040	Gallus_gallus
ENSGACG00000004181	srp54	100	99.008	ENSGAFG00000011586	srp54	100	99.008	Gambusia_affinis
ENSGACG00000004181	srp54	100	95.437	ENSGAGG00000014766	SRP54	100	95.437	Gopherus_agassizii
ENSGACG00000004181	srp54	100	95.437	ENSGGOG00000002926	SRP54	100	95.437	Gorilla_gorilla
ENSGACG00000004181	srp54	100	98.810	ENSHBUG00000005678	srp54	100	98.810	Haplochromis_burtoni
ENSGACG00000004181	srp54	100	95.437	ENSHGLG00000002850	SRP54	100	95.437	Heterocephalus_glaber_female
ENSGACG00000004181	srp54	100	66.733	ENSHGLG00100007281	-	100	66.733	Heterocephalus_glaber_male
ENSGACG00000004181	srp54	100	95.437	ENSHGLG00100005263	SRP54	100	95.437	Heterocephalus_glaber_male
ENSGACG00000004181	srp54	100	97.817	ENSHCOG00000021127	srp54	100	97.817	Hippocampus_comes
ENSGACG00000004181	srp54	100	98.016	ENSIPUG00000001420	srp54	100	98.016	Ictalurus_punctatus
ENSGACG00000004181	srp54	100	95.437	ENSSTOG00000016023	SRP54	100	95.437	Ictidomys_tridecemlineatus
ENSGACG00000004181	srp54	100	90.675	ENSJJAG00000013417	-	100	90.675	Jaculus_jaculus
ENSGACG00000004181	srp54	87	73.864	ENSJJAG00000016404	-	100	73.864	Jaculus_jaculus
ENSGACG00000004181	srp54	100	98.413	ENSKMAG00000007707	srp54	100	98.413	Kryptolebias_marmoratus
ENSGACG00000004181	srp54	100	99.008	ENSLBEG00000018690	srp54	100	99.008	Labrus_bergylta
ENSGACG00000004181	srp54	100	99.008	ENSLBEG00000021122	srp54	100	99.008	Labrus_bergylta
ENSGACG00000004181	srp54	100	96.230	ENSLACG00000017890	SRP54	100	96.230	Latimeria_chalumnae
ENSGACG00000004181	srp54	100	98.016	ENSLOCG00000009440	srp54	100	98.016	Lepisosteus_oculatus
ENSGACG00000004181	srp54	100	95.437	ENSLAFG00000012007	SRP54	100	95.437	Loxodonta_africana
ENSGACG00000004181	srp54	100	95.437	ENSMFAG00000044371	SRP54	100	95.437	Macaca_fascicularis
ENSGACG00000004181	srp54	100	95.437	ENSMMUG00000015073	FAM177A1	100	95.437	Macaca_mulatta
ENSGACG00000004181	srp54	100	95.437	ENSMNEG00000006947	SRP54	100	95.437	Macaca_nemestrina
ENSGACG00000004181	srp54	100	95.437	ENSMLEG00000042251	SRP54	100	95.437	Mandrillus_leucophaeus
ENSGACG00000004181	srp54	100	98.810	ENSMAMG00000004803	srp54	100	98.810	Mastacembelus_armatus
ENSGACG00000004181	srp54	100	98.810	ENSMZEG00005027528	srp54	100	98.810	Maylandia_zebra
ENSGACG00000004181	srp54	100	90.711	ENSMGAG00000012481	SRP54	100	90.711	Meleagris_gallopavo
ENSGACG00000004181	srp54	100	95.635	ENSMAUG00000014447	-	100	95.635	Mesocricetus_auratus
ENSGACG00000004181	srp54	100	95.437	ENSMICG00000010270	SRP54	100	95.437	Microcebus_murinus
ENSGACG00000004181	srp54	87	95.455	ENSMOCG00000000948	-	100	95.455	Microtus_ochrogaster
ENSGACG00000004181	srp54	100	97.696	ENSMMOG00000020303	srp54	99	96.256	Mola_mola
ENSGACG00000004181	srp54	100	95.437	ENSMODG00000023150	-	100	95.437	Monodelphis_domestica
ENSGACG00000004181	srp54	100	95.437	ENSMODG00000012925	-	100	95.437	Monodelphis_domestica
ENSGACG00000004181	srp54	100	98.157	ENSMALG00000009163	srp54	99	97.321	Monopterus_albus
ENSGACG00000004181	srp54	100	95.635	MGP_CAROLIEiJ_G0017754	-	100	95.635	Mus_caroli
ENSGACG00000004181	srp54	100	95.635	ENSMUSG00000112449	Srp54b	100	95.635	Mus_musculus
ENSGACG00000004181	srp54	100	94.841	ENSMUSG00000079108	Srp54c	100	94.841	Mus_musculus
ENSGACG00000004181	srp54	100	95.635	ENSMUSG00000073079	Srp54a	100	96.364	Mus_musculus
ENSGACG00000004181	srp54	100	95.635	MGP_PahariEiJ_G0029510	-	100	95.635	Mus_pahari
ENSGACG00000004181	srp54	100	95.437	ENSMPUG00000016302	SRP54	100	95.437	Mustela_putorius_furo
ENSGACG00000004181	srp54	100	94.841	ENSMLUG00000008958	SRP54	100	94.841	Myotis_lucifugus
ENSGACG00000004181	srp54	100	86.111	ENSNGAG00000019806	-	100	86.111	Nannospalax_galili
ENSGACG00000004181	srp54	87	98.864	ENSNBRG00000006000	srp54	100	98.864	Neolamprologus_brichardi
ENSGACG00000004181	srp54	100	95.437	ENSNLEG00000003496	SRP54	100	95.437	Nomascus_leucogenys
ENSGACG00000004181	srp54	77	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSGACG00000004181	srp54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSGACG00000004181	srp54	100	95.437	ENSODEG00000004865	SRP54	100	95.437	Octodon_degus
ENSGACG00000004181	srp54	100	98.810	ENSONIG00000011768	srp54	100	98.810	Oreochromis_niloticus
ENSGACG00000004181	srp54	100	95.437	ENSOANG00000014051	SRP54	100	95.437	Ornithorhynchus_anatinus
ENSGACG00000004181	srp54	100	95.161	ENSOCUG00000007838	SRP54	100	94.841	Oryctolagus_cuniculus
ENSGACG00000004181	srp54	100	99.008	ENSORLG00000010027	srp54	100	99.008	Oryzias_latipes
ENSGACG00000004181	srp54	100	99.008	ENSORLG00020001878	srp54	100	99.008	Oryzias_latipes_hni
ENSGACG00000004181	srp54	100	99.008	ENSORLG00015021866	srp54	100	99.008	Oryzias_latipes_hsok
ENSGACG00000004181	srp54	100	98.810	ENSOMEG00000020952	srp54	100	98.810	Oryzias_melastigma
ENSGACG00000004181	srp54	100	95.437	ENSOGAG00000012188	SRP54	100	95.437	Otolemur_garnettii
ENSGACG00000004181	srp54	100	95.437	ENSOARG00000007160	SRP54	100	95.437	Ovis_aries
ENSGACG00000004181	srp54	100	95.437	ENSPPAG00000017434	SRP54	100	95.437	Pan_paniscus
ENSGACG00000004181	srp54	100	94.444	ENSPPRG00000014047	SRP54	100	94.444	Panthera_pardus
ENSGACG00000004181	srp54	100	95.238	ENSPTIG00000000744	SRP54	96	95.238	Panthera_tigris_altaica
ENSGACG00000004181	srp54	100	95.437	ENSPTRG00000006259	FAM177A1	100	95.437	Pan_troglodytes
ENSGACG00000004181	srp54	100	95.437	ENSPANG00000023853	SRP54	100	95.437	Papio_anubis
ENSGACG00000004181	srp54	100	97.421	ENSPKIG00000001953	srp54	100	97.421	Paramormyrops_kingsleyae
ENSGACG00000004181	srp54	100	95.238	ENSPSIG00000006476	SRP54	100	95.238	Pelodiscus_sinensis
ENSGACG00000004181	srp54	100	98.387	ENSPMGG00000004127	srp54	99	95.435	Periophthalmus_magnuspinnatus
ENSGACG00000004181	srp54	100	83.532	ENSPEMG00000019634	-	100	83.532	Peromyscus_maniculatus_bairdii
ENSGACG00000004181	srp54	100	92.396	ENSPMAG00000006078	-	100	89.881	Petromyzon_marinus
ENSGACG00000004181	srp54	100	95.437	ENSPCIG00000016175	SRP54	100	95.437	Phascolarctos_cinereus
ENSGACG00000004181	srp54	100	99.008	ENSPFOG00000008870	srp54	100	99.008	Poecilia_formosa
ENSGACG00000004181	srp54	100	99.008	ENSPLAG00000009889	srp54	100	99.008	Poecilia_latipinna
ENSGACG00000004181	srp54	100	99.008	ENSPMEG00000008601	srp54	100	99.008	Poecilia_mexicana
ENSGACG00000004181	srp54	100	99.008	ENSPREG00000004505	srp54	100	99.008	Poecilia_reticulata
ENSGACG00000004181	srp54	100	90.675	ENSPPYG00000005739	SRP54	100	90.675	Pongo_abelii
ENSGACG00000004181	srp54	100	91.667	ENSPCAG00000006268	SRP54	100	91.667	Procavia_capensis
ENSGACG00000004181	srp54	100	93.465	ENSPCOG00000022473	SRP54	100	93.465	Propithecus_coquereli
ENSGACG00000004181	srp54	74	96.809	ENSPVAG00000010056	SRP54	82	96.809	Pteropus_vampyrus
ENSGACG00000004181	srp54	100	98.810	ENSPNYG00000009717	srp54	100	98.810	Pundamilia_nyererei
ENSGACG00000004181	srp54	100	97.817	ENSPNAG00000008544	srp54	100	97.817	Pygocentrus_nattereri
ENSGACG00000004181	srp54	100	95.437	ENSRNOG00000032776	Srp54a	100	95.437	Rattus_norvegicus
ENSGACG00000004181	srp54	100	95.437	ENSRROG00000041292	SRP54	100	95.437	Rhinopithecus_roxellana
ENSGACG00000004181	srp54	99	51.020	YPR088C	SRP54	95	46.743	Saccharomyces_cerevisiae
ENSGACG00000004181	srp54	94	95.148	ENSSBOG00000035145	SRP54	100	95.148	Saimiri_boliviensis_boliviensis
ENSGACG00000004181	srp54	68	94.461	ENSSHAG00000000671	SRP54	100	94.461	Sarcophilus_harrisii
ENSGACG00000004181	srp54	100	97.817	ENSSFOG00015013920	srp54	100	97.817	Scleropages_formosus
ENSGACG00000004181	srp54	100	98.387	ENSSMAG00000002441	srp54	100	93.071	Scophthalmus_maximus
ENSGACG00000004181	srp54	100	98.611	ENSSDUG00000018586	srp54	100	98.611	Seriola_dumerili
ENSGACG00000004181	srp54	100	98.810	ENSSLDG00000010476	srp54	100	98.810	Seriola_lalandi_dorsalis
ENSGACG00000004181	srp54	100	95.437	ENSSARG00000002744	SRP54	100	95.437	Sorex_araneus
ENSGACG00000004181	srp54	100	95.437	ENSSPUG00000013101	SRP54	100	95.437	Sphenodon_punctatus
ENSGACG00000004181	srp54	100	99.206	ENSSPAG00000002354	srp54	100	99.206	Stegastes_partitus
ENSGACG00000004181	srp54	100	95.437	ENSSSCG00000001955	SRP54	100	95.437	Sus_scrofa
ENSGACG00000004181	srp54	100	94.470	ENSTGUG00000011945	-	95	94.726	Taeniopygia_guttata
ENSGACG00000004181	srp54	100	98.413	ENSTRUG00000007057	srp54	100	98.413	Takifugu_rubripes
ENSGACG00000004181	srp54	100	97.696	ENSTNIG00000002589	srp54	100	97.619	Tetraodon_nigroviridis
ENSGACG00000004181	srp54	89	86.577	ENSTBEG00000011409	SRP54	100	86.577	Tupaia_belangeri
ENSGACG00000004181	srp54	100	86.111	ENSTTRG00000000928	SRP54	100	86.111	Tursiops_truncatus
ENSGACG00000004181	srp54	60	96.565	ENSUAMG00000012385	SRP54	100	96.565	Ursus_americanus
ENSGACG00000004181	srp54	100	95.437	ENSUMAG00000011234	SRP54	100	95.437	Ursus_maritimus
ENSGACG00000004181	srp54	100	94.931	ENSVPAG00000005668	SRP54	100	94.937	Vicugna_pacos
ENSGACG00000004181	srp54	100	95.437	ENSVVUG00000019962	SRP54	100	95.437	Vulpes_vulpes
ENSGACG00000004181	srp54	100	80.671	ENSXETG00000012290	srp54	100	80.671	Xenopus_tropicalis
ENSGACG00000004181	srp54	100	98.848	ENSXCOG00000004658	srp54	96	98.871	Xiphophorus_couchianus
ENSGACG00000004181	srp54	100	99.008	ENSXMAG00000018315	srp54	100	99.008	Xiphophorus_maculatus