EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000004389 (Gene tree)
Gene ID: -
Gene Symbol: chd5
Alias: -
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 20445 bases
Position: chrgroupXVII:1918378-1938822
Accession: ZDB-GENE-120314-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000005811	ResIII	PF04851.15	1.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000005833	-	387	-	ENSGACP00000005817	128 (aa)	-	G3NKF4
ENSGACT00000005827	-	3489	-	ENSGACP00000005811	1163 (aa)	-	G3NKE9

Gene Model

Click here to download ENSGACG00000004389's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000004389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000004389	chd5	75	76.398	ENSGACG00000019275	chd3	56	68.327
ENSGACG00000004389	chd5	58	79.148	ENSGACG00000010099	-	61	79.442
ENSGACG00000004389	chd5	96	68.126	ENSGACG00000018705	chd4a	61	67.055

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000004389	chd5	93	82.708	ENSG00000116254	CHD5	75	91.566	Homo_sapiens
ENSGACG00000004389	chd5	99	79.706	ENSAMEG00000009880	CHD5	57	81.319	Ailuropoda_melanoleuca
ENSGACG00000004389	chd5	97	90.434	ENSACIG00000012582	chd5	58	93.062	Amphilophus_citrinellus
ENSGACG00000004389	chd5	97	93.711	ENSAOCG00000020356	chd5	56	93.440	Amphiprion_ocellaris
ENSGACG00000004389	chd5	93	75.045	ENSAPLG00000015475	CHD5	58	75.249	Anas_platyrhynchos
ENSGACG00000004389	chd5	93	80.293	ENSACAG00000002441	CHD5	55	80.331	Anolis_carolinensis
ENSGACG00000004389	chd5	90	82.762	ENSANAG00000001078	CHD5	56	82.667	Aotus_nancymaae
ENSGACG00000004389	chd5	97	89.991	ENSACLG00000003012	chd5	62	89.628	Astatotilapia_calliptera
ENSGACG00000004389	chd5	89	86.789	ENSAMXG00000008921	chd5	61	86.994	Astyanax_mexicanus
ENSGACG00000004389	chd5	92	81.970	ENSBTAG00000040477	CHD5	59	82.239	Bos_taurus
ENSGACG00000004389	chd5	93	82.617	ENSCJAG00000000101	CHD5	56	82.525	Callithrix_jacchus
ENSGACG00000004389	chd5	92	82.609	ENSCAFG00000019545	CHD5	85	82.532	Canis_familiaris
ENSGACG00000004389	chd5	99	80.587	ENSCAFG00020008689	CHD5	55	82.904	Canis_lupus_dingo
ENSGACG00000004389	chd5	98	80.366	ENSCHIG00000015027	CHD5	54	82.857	Capra_hircus
ENSGACG00000004389	chd5	93	77.788	ENSTSYG00000033991	CHD5	55	77.507	Carlito_syrichta
ENSGACG00000004389	chd5	93	83.333	ENSCAPG00000009294	CHD5	57	83.180	Cavia_aperea
ENSGACG00000004389	chd5	93	83.333	ENSCPOG00000025080	CHD5	57	83.180	Cavia_porcellus
ENSGACG00000004389	chd5	93	82.708	ENSCCAG00000024756	CHD5	78	83.577	Cebus_capucinus
ENSGACG00000004389	chd5	98	80.122	ENSCATG00000043011	CHD5	56	82.752	Cercocebus_atys
ENSGACG00000004389	chd5	93	83.180	ENSCLAG00000010589	CHD5	57	83.088	Chinchilla_lanigera
ENSGACG00000004389	chd5	93	82.891	ENSCSAG00000000733	CHD5	56	82.617	Chlorocebus_sabaeus
ENSGACG00000004389	chd5	92	81.978	ENSCPBG00000019363	CHD5	59	81.574	Chrysemys_picta_bellii
ENSGACG00000004389	chd5	93	82.983	ENSCANG00000032302	CHD5	56	82.708	Colobus_angolensis_palliatus
ENSGACG00000004389	chd5	91	80.733	ENSCGRG00001011042	Chd5	95	81.881	Cricetulus_griseus_chok1gshd
ENSGACG00000004389	chd5	93	82.904	ENSCGRG00000011341	Chd5	57	82.721	Cricetulus_griseus_crigri
ENSGACG00000004389	chd5	97	87.323	ENSDARG00000105083	chd5	57	87.323	Danio_rerio
ENSGACG00000004389	chd5	92	69.848	ENSDARG00000025789	chd4b	56	70.018	Danio_rerio
ENSGACG00000004389	chd5	100	80.119	ENSDNOG00000046342	CHD5	56	81.793	Dasypus_novemcinctus
ENSGACG00000004389	chd5	93	82.553	ENSDORG00000005923	Chd5	57	82.461	Dipodomys_ordii
ENSGACG00000004389	chd5	99	78.961	ENSEASG00005021464	CHD5	61	80.773	Equus_asinus_asinus
ENSGACG00000004389	chd5	99	78.268	ENSECAG00000025043	CHD5	64	80.812	Equus_caballus
ENSGACG00000004389	chd5	98	84.024	ENSELUG00000010742	chd5	62	84.683	Esox_lucius
ENSGACG00000004389	chd5	99	81.223	ENSFCAG00000006319	CHD5	56	82.922	Felis_catus
ENSGACG00000004389	chd5	93	81.193	ENSFALG00000009740	CHD5	56	80.935	Ficedula_albicollis
ENSGACG00000004389	chd5	93	83.012	ENSFDAG00000012881	CHD5	56	82.708	Fukomys_damarensis
ENSGACG00000004389	chd5	93	81.668	ENSGALG00000000747	CHD5	56	81.835	Gallus_gallus
ENSGACG00000004389	chd5	93	80.165	ENSGAGG00000001590	CHD5	72	85.567	Gopherus_agassizii
ENSGACG00000004389	chd5	93	82.708	ENSGGOG00000000708	CHD5	76	86.121	Gorilla_gorilla
ENSGACG00000004389	chd5	97	87.150	ENSHBUG00000013453	chd5	61	86.789	Haplochromis_burtoni
ENSGACG00000004389	chd5	93	82.996	ENSHGLG00000018184	CHD5	57	82.708	Heterocephalus_glaber_female
ENSGACG00000004389	chd5	93	73.358	ENSHGLG00100013261	CHD5	55	73.291	Heterocephalus_glaber_male
ENSGACG00000004389	chd5	97	84.383	ENSIPUG00000005446	chd5	84	85.344	Ictalurus_punctatus
ENSGACG00000004389	chd5	93	82.812	ENSSTOG00000002778	CHD5	57	82.721	Ictidomys_tridecemlineatus
ENSGACG00000004389	chd5	93	83.073	ENSJJAG00000019072	Chd5	57	82.705	Jaculus_jaculus
ENSGACG00000004389	chd5	61	84.547	ENSLACG00000022233	-	99	83.140	Latimeria_chalumnae
ENSGACG00000004389	chd5	93	86.753	ENSLOCG00000004944	chd5	55	87.085	Lepisosteus_oculatus
ENSGACG00000004389	chd5	93	82.983	ENSLAFG00000006348	CHD5	61	78.947	Loxodonta_africana
ENSGACG00000004389	chd5	93	82.891	ENSMFAG00000033993	CHD5	59	82.609	Macaca_fascicularis
ENSGACG00000004389	chd5	93	83.180	ENSMMUG00000016838	CHD5	57	82.904	Macaca_mulatta
ENSGACG00000004389	chd5	93	82.891	ENSMNEG00000040044	CHD5	56	82.617	Macaca_nemestrina
ENSGACG00000004389	chd5	93	80.948	ENSMLEG00000039166	CHD5	58	80.680	Mandrillus_leucophaeus
ENSGACG00000004389	chd5	97	89.991	ENSMZEG00005000841	chd5	61	89.628	Maylandia_zebra
ENSGACG00000004389	chd5	93	81.777	ENSMGAG00000001055	CHD5	56	82.126	Meleagris_gallopavo
ENSGACG00000004389	chd5	93	83.105	ENSMICG00000017862	CHD5	58	82.434	Microcebus_murinus
ENSGACG00000004389	chd5	93	82.889	ENSMOCG00000011049	Chd5	57	82.705	Microtus_ochrogaster
ENSGACG00000004389	chd5	97	93.268	ENSMALG00000002831	chd5	58	92.990	Monopterus_albus
ENSGACG00000004389	chd5	93	82.633	MGP_CAROLIEiJ_G0026857	Chd5	56	82.509	Mus_caroli
ENSGACG00000004389	chd5	93	82.981	ENSMUSG00000005045	Chd5	56	82.797	Mus_musculus
ENSGACG00000004389	chd5	93	82.889	MGP_PahariEiJ_G0029205	Chd5	57	82.705	Mus_pahari
ENSGACG00000004389	chd5	93	82.981	MGP_SPRETEiJ_G0027850	Chd5	57	82.797	Mus_spretus
ENSGACG00000004389	chd5	99	80.673	ENSMPUG00000007122	CHD5	54	82.434	Mustela_putorius_furo
ENSGACG00000004389	chd5	93	82.353	ENSNGAG00000019812	Chd5	54	81.927	Nannospalax_galili
ENSGACG00000004389	chd5	93	82.374	ENSNLEG00000010320	CHD5	83	81.961	Nomascus_leucogenys
ENSGACG00000004389	chd5	93	82.981	ENSODEG00000010262	CHD5	57	82.797	Octodon_degus
ENSGACG00000004389	chd5	97	90.759	ENSONIG00000000619	chd5	58	91.762	Oreochromis_niloticus
ENSGACG00000004389	chd5	89	64.689	ENSOANG00000001819	CHD5	55	64.165	Ornithorhynchus_anatinus
ENSGACG00000004389	chd5	95	81.574	ENSOGAG00000005703	CHD5	56	82.310	Otolemur_garnettii
ENSGACG00000004389	chd5	99	79.913	ENSOARG00000013425	CHD5	56	82.267	Ovis_aries
ENSGACG00000004389	chd5	93	82.541	ENSPPAG00000034048	CHD5	56	82.633	Pan_paniscus
ENSGACG00000004389	chd5	99	81.223	ENSPPRG00000009453	CHD5	56	82.922	Panthera_pardus
ENSGACG00000004389	chd5	99	75.194	ENSPTIG00000013926	CHD5	55	76.734	Panthera_tigris_altaica
ENSGACG00000004389	chd5	93	82.541	ENSPTRG00000000075	CHD5	56	82.633	Pan_troglodytes
ENSGACG00000004389	chd5	93	82.891	ENSPANG00000006765	CHD5	56	82.617	Papio_anubis
ENSGACG00000004389	chd5	93	86.162	ENSPKIG00000004282	chd5	59	85.860	Paramormyrops_kingsleyae
ENSGACG00000004389	chd5	93	80.948	ENSPSIG00000006414	CHD5	58	80.256	Pelodiscus_sinensis
ENSGACG00000004389	chd5	93	82.857	ENSPEMG00000014799	Chd5	84	82.337	Peromyscus_maniculatus_bairdii
ENSGACG00000004389	chd5	99	80.759	ENSPCIG00000028310	CHD5	56	82.251	Phascolarctos_cinereus
ENSGACG00000004389	chd5	90	93.818	ENSPLAG00000005343	chd5	56	93.594	Poecilia_latipinna
ENSGACG00000004389	chd5	93	82.891	ENSPPYG00000001952	CHD5	59	82.617	Pongo_abelii
ENSGACG00000004389	chd5	93	83.242	ENSPCOG00000022930	CHD5	56	82.434	Propithecus_coquereli
ENSGACG00000004389	chd5	97	92.287	ENSPNYG00000003183	chd5	59	91.933	Pundamilia_nyererei
ENSGACG00000004389	chd5	93	82.784	ENSRNOG00000011268	Chd5	56	82.601	Rattus_norvegicus
ENSGACG00000004389	chd5	94	82.156	ENSRBIG00000032140	CHD5	57	82.516	Rhinopithecus_bieti
ENSGACG00000004389	chd5	93	82.708	ENSRROG00000041146	CHD5	56	82.434	Rhinopithecus_roxellana
ENSGACG00000004389	chd5	93	77.402	ENSSBOG00000001955	CHD5	55	84.250	Saimiri_boliviensis_boliviensis
ENSGACG00000004389	chd5	93	81.793	ENSSHAG00000018641	CHD5	60	81.685	Sarcophilus_harrisii
ENSGACG00000004389	chd5	99	87.133	ENSSFOG00015006296	chd5	59	83.715	Scleropages_formosus
ENSGACG00000004389	chd5	98	91.243	ENSSDUG00000017526	chd5	64	90.909	Seriola_dumerili
ENSGACG00000004389	chd5	99	75.043	ENSSPUG00000010622	CHD5	54	80.159	Sphenodon_punctatus
ENSGACG00000004389	chd5	93	83.105	ENSSSCG00000003366	CHD5	59	82.609	Sus_scrofa
ENSGACG00000004389	chd5	93	75.956	ENSTGUG00000002634	-	60	75.884	Taeniopygia_guttata
ENSGACG00000004389	chd5	87	89.163	ENSTNIG00000004346	chd5	99	88.856	Tetraodon_nigroviridis
ENSGACG00000004389	chd5	99	79.602	ENSTTRG00000010468	CHD5	57	81.485	Tursiops_truncatus
ENSGACG00000004389	chd5	99	81.212	ENSUAMG00000024509	CHD5	86	82.549	Ursus_americanus
ENSGACG00000004389	chd5	99	76.277	ENSUMAG00000024173	CHD5	86	76.931	Ursus_maritimus
ENSGACG00000004389	chd5	99	79.052	ENSVVUG00000026480	CHD5	62	79.266	Vulpes_vulpes
ENSGACG00000004389	chd5	98	75.815	ENSXETG00000002904	chd5	60	77.437	Xenopus_tropicalis
ENSGACG00000004389	chd5	95	89.350	ENSXCOG00000014202	chd5	97	89.260	Xiphophorus_couchianus