EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000004505 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: si:dkey-37o8.1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 3255 bases
Position: chrgroupXXI:9927423-9930677
Accession: ZDB-GENE-030131-5667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000005971	GTP_EFTU	PF00009.27	2e-53	1	1
ENSGACP00000005979	GTP_EFTU	PF00009.27	2e-53	1	1
ENSGACP00000005981	GTP_EFTU	PF00009.27	2e-53	1	1
ENSGACP00000005971	MMR_HSR1	PF01926.23	1.6e-07	1	1
ENSGACP00000005979	MMR_HSR1	PF01926.23	1.6e-07	1	1
ENSGACP00000005981	MMR_HSR1	PF01926.23	1.7e-07	1	1
ENSGACP00000005981	GTP_EFTU_D2	PF03144.25	8.1e-13	1	1
ENSGACP00000005971	GTP_EFTU_D2	PF03144.25	8.2e-13	1	1
ENSGACP00000005979	GTP_EFTU_D2	PF03144.25	8.2e-13	1	1
ENSGACP00000005971	GTP_EFTU_D3	PF03143.17	3.7e-37	1	1
ENSGACP00000005979	GTP_EFTU_D3	PF03143.17	3.7e-37	1	1
ENSGACP00000005981	GTP_EFTU_D3	PF03143.17	3.8e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000005998	-	1380	-	ENSGACP00000005981	460 (aa)	-	G3NKW8
ENSGACT00000005996	-	1374	-	ENSGACP00000005979	458 (aa)	-	G3NKW6
ENSGACT00000005988	-	1776	-	ENSGACP00000005971	457 (aa)	-	G3NKV8

Gene Model

Click here to download ENSGACG00000004505's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000004505's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000004505	si:dkey-37o8.1	96	31.027	ENSGACG00000012961	tufm	88	34.097
ENSGACG00000004505	si:dkey-37o8.1	95	36.175	ENSGACG00000004324	gspt1l	75	36.092
ENSGACG00000004505	si:dkey-37o8.1	100	67.320	ENSGACG00000002143	-	99	67.904
ENSGACG00000004505	si:dkey-37o8.1	99	68.860	ENSGACG00000018090	eef1a1b	99	68.860
ENSGACG00000004505	si:dkey-37o8.1	96	36.712	ENSGACG00000004490	-	75	36.465
ENSGACG00000004505	si:dkey-37o8.1	100	68.696	ENSGACG00000002175	-	99	69.079
ENSGACG00000004505	si:dkey-37o8.1	98	67.849	ENSGACG00000002182	-	99	67.473
ENSGACG00000004505	si:dkey-37o8.1	96	38.776	ENSGACG00000011035	hbs1l	62	38.776

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000004505	si:dkey-37o8.1	100	88.403	ENSAPOG00000016459	si:dkey-37o8.1	100	88.403	Acanthochromis_polyacanthus
ENSGACG00000004505	si:dkey-37o8.1	96	87.872	ENSACIG00000020985	si:dkey-37o8.1	82	87.872	Amphilophus_citrinellus
ENSGACG00000004505	si:dkey-37o8.1	100	89.497	ENSAOCG00000002663	si:dkey-37o8.1	100	89.497	Amphiprion_ocellaris
ENSGACG00000004505	si:dkey-37o8.1	100	89.278	ENSAPEG00000012670	si:dkey-37o8.1	100	89.278	Amphiprion_percula
ENSGACG00000004505	si:dkey-37o8.1	92	91.469	ENSATEG00000002217	si:dkey-37o8.1	99	91.469	Anabas_testudineus
ENSGACG00000004505	si:dkey-37o8.1	100	88.403	ENSACLG00000003519	si:dkey-37o8.1	100	88.403	Astatotilapia_calliptera
ENSGACG00000004505	si:dkey-37o8.1	100	81.223	ENSAMXG00000002728	si:dkey-37o8.1	100	81.223	Astyanax_mexicanus
ENSGACG00000004505	si:dkey-37o8.1	99	70.395	ENSCPBG00000020570	-	90	70.395	Chrysemys_picta_bellii
ENSGACG00000004505	si:dkey-37o8.1	100	83.007	ENSCSEG00000019807	si:dkey-37o8.1	100	82.328	Cynoglossus_semilaevis
ENSGACG00000004505	si:dkey-37o8.1	99	87.004	ENSCVAG00000009828	si:dkey-37o8.1	99	87.004	Cyprinodon_variegatus
ENSGACG00000004505	si:dkey-37o8.1	100	79.039	ENSDARG00000071727	si:dkey-37o8.1	95	79.039	Danio_rerio
ENSGACG00000004505	si:dkey-37o8.1	100	81.223	ENSELUG00000007495	si:dkey-37o8.1	100	81.223	Esox_lucius
ENSGACG00000004505	si:dkey-37o8.1	100	86.652	ENSFHEG00000017452	si:dkey-37o8.1	100	86.652	Fundulus_heteroclitus
ENSGACG00000004505	si:dkey-37o8.1	99	78.634	ENSGMOG00000006122	si:dkey-37o8.1	100	78.634	Gadus_morhua
ENSGACG00000004505	si:dkey-37o8.1	98	81.473	ENSGAFG00000000367	si:dkey-37o8.1	99	81.473	Gambusia_affinis
ENSGACG00000004505	si:dkey-37o8.1	99	70.833	ENSGAGG00000007724	-	97	77.885	Gopherus_agassizii
ENSGACG00000004505	si:dkey-37o8.1	100	88.184	ENSHBUG00000015515	si:dkey-37o8.1	100	88.184	Haplochromis_burtoni
ENSGACG00000004505	si:dkey-37o8.1	98	79.333	ENSHCOG00000001215	si:dkey-37o8.1	99	79.333	Hippocampus_comes
ENSGACG00000004505	si:dkey-37o8.1	100	79.039	ENSIPUG00000004067	si:dkey-37o8.1	100	79.039	Ictalurus_punctatus
ENSGACG00000004505	si:dkey-37o8.1	100	87.090	ENSKMAG00000015910	si:dkey-37o8.1	100	87.090	Kryptolebias_marmoratus
ENSGACG00000004505	si:dkey-37o8.1	100	91.685	ENSLBEG00000021334	si:dkey-37o8.1	90	91.850	Labrus_bergylta
ENSGACG00000004505	si:dkey-37o8.1	99	74.670	ENSLACG00000003948	si:dkey-37o8.1	99	74.670	Latimeria_chalumnae
ENSGACG00000004505	si:dkey-37o8.1	98	78.700	ENSLOCG00000011245	si:dkey-37o8.1	99	77.511	Lepisosteus_oculatus
ENSGACG00000004505	si:dkey-37o8.1	100	72.926	ENSMAMG00000009907	si:dkey-37o8.1	96	72.926	Mastacembelus_armatus
ENSGACG00000004505	si:dkey-37o8.1	100	88.403	ENSMZEG00005018358	si:dkey-37o8.1	100	88.403	Maylandia_zebra
ENSGACG00000004505	si:dkey-37o8.1	98	88.864	ENSMMOG00000004111	si:dkey-37o8.1	98	88.864	Mola_mola
ENSGACG00000004505	si:dkey-37o8.1	96	80.822	ENSMALG00000017152	si:dkey-37o8.1	99	80.822	Monopterus_albus
ENSGACG00000004505	si:dkey-37o8.1	100	88.403	ENSNBRG00000013552	si:dkey-37o8.1	100	88.403	Neolamprologus_brichardi
ENSGACG00000004505	si:dkey-37o8.1	100	87.746	ENSONIG00000006165	si:dkey-37o8.1	100	87.746	Oreochromis_niloticus
ENSGACG00000004505	si:dkey-37o8.1	100	87.090	ENSORLG00000019066	si:dkey-37o8.1	100	87.090	Oryzias_latipes
ENSGACG00000004505	si:dkey-37o8.1	100	87.090	ENSORLG00020008094	si:dkey-37o8.1	100	87.090	Oryzias_latipes_hni
ENSGACG00000004505	si:dkey-37o8.1	100	87.309	ENSORLG00015008410	si:dkey-37o8.1	100	87.309	Oryzias_latipes_hsok
ENSGACG00000004505	si:dkey-37o8.1	100	87.527	ENSOMEG00000001868	si:dkey-37o8.1	100	87.527	Oryzias_melastigma
ENSGACG00000004505	si:dkey-37o8.1	100	80.392	ENSPKIG00000017246	si:dkey-37o8.1	100	80.392	Paramormyrops_kingsleyae
ENSGACG00000004505	si:dkey-37o8.1	59	65.455	ENSPSIG00000008080	-	99	64.057	Pelodiscus_sinensis
ENSGACG00000004505	si:dkey-37o8.1	100	86.652	ENSPFOG00000013173	si:dkey-37o8.1	100	86.652	Poecilia_formosa
ENSGACG00000004505	si:dkey-37o8.1	100	85.558	ENSPLAG00000010405	si:dkey-37o8.1	100	85.558	Poecilia_latipinna
ENSGACG00000004505	si:dkey-37o8.1	100	87.090	ENSPMEG00000015233	si:dkey-37o8.1	100	87.090	Poecilia_mexicana
ENSGACG00000004505	si:dkey-37o8.1	99	86.564	ENSPREG00000006280	si:dkey-37o8.1	100	86.564	Poecilia_reticulata
ENSGACG00000004505	si:dkey-37o8.1	100	88.403	ENSPNYG00000002059	si:dkey-37o8.1	100	88.403	Pundamilia_nyererei
ENSGACG00000004505	si:dkey-37o8.1	100	80.131	ENSPNAG00000009990	si:dkey-37o8.1	100	80.131	Pygocentrus_nattereri
ENSGACG00000004505	si:dkey-37o8.1	98	80.761	ENSSFOG00015019070	si:dkey-37o8.1	98	80.761	Scleropages_formosus
ENSGACG00000004505	si:dkey-37o8.1	100	91.247	ENSSMAG00000016143	si:dkey-37o8.1	100	91.247	Scophthalmus_maximus
ENSGACG00000004505	si:dkey-37o8.1	100	91.466	ENSSDUG00000009163	si:dkey-37o8.1	100	91.466	Seriola_dumerili
ENSGACG00000004505	si:dkey-37o8.1	100	91.247	ENSSLDG00000023761	si:dkey-37o8.1	100	91.247	Seriola_lalandi_dorsalis
ENSGACG00000004505	si:dkey-37o8.1	99	68.874	ENSSPUG00000007467	-	100	67.974	Sphenodon_punctatus
ENSGACG00000004505	si:dkey-37o8.1	100	89.059	ENSSPAG00000013856	si:dkey-37o8.1	100	89.059	Stegastes_partitus
ENSGACG00000004505	si:dkey-37o8.1	99	88.326	ENSTRUG00000009006	si:dkey-37o8.1	99	89.438	Takifugu_rubripes
ENSGACG00000004505	si:dkey-37o8.1	99	88.158	ENSTNIG00000017138	si:dkey-37o8.1	98	88.158	Tetraodon_nigroviridis
ENSGACG00000004505	si:dkey-37o8.1	99	72.867	ENSXETG00000017744	42Sp50	99	72.867	Xenopus_tropicalis
ENSGACG00000004505	si:dkey-37o8.1	99	86.784	ENSXCOG00000012296	si:dkey-37o8.1	100	91.209	Xiphophorus_couchianus
ENSGACG00000004505	si:dkey-37o8.1	100	87.090	ENSXMAG00000001998	si:dkey-37o8.1	100	87.090	Xiphophorus_maculatus