EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000004544 (Gene tree)
Gene ID: -
Gene Symbol: csde1
Alias: fa92c07|si:ch211-261n11.2|wu:fa92c07|wu:fa97c10|wu:fb53f07|wu:fb78d03
Full Name: cold shock domain containing E1%2C RNA-binding
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 6635 bases
Position: chrgroupXII:4071204-4077838
Accession: ZDB-GENE-030131-8623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000006002	CSD	PF00313.22	1.9e-82	1	5
ENSGACP00000006002	CSD	PF00313.22	1.9e-82	2	5
ENSGACP00000006002	CSD	PF00313.22	1.9e-82	3	5
ENSGACP00000006002	CSD	PF00313.22	1.9e-82	4	5
ENSGACP00000006002	CSD	PF00313.22	1.9e-82	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000006019	-	2391	-	ENSGACP00000006002	797 (aa)	-	G3NKY9

Gene Model

Click here to download ENSGACG00000004544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000004544's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000004544	csde1	100	77.625	ENSG00000009307	CSDE1	97	86.364	Homo_sapiens
ENSGACG00000004544	csde1	100	92.525	ENSAPOG00000015538	csde1	99	92.073	Acanthochromis_polyacanthus
ENSGACG00000004544	csde1	100	74.311	ENSAMEG00000017129	CSDE1	94	74.311	Ailuropoda_melanoleuca
ENSGACG00000004544	csde1	90	91.622	ENSACIG00000015175	csde1	100	91.622	Amphilophus_citrinellus
ENSGACG00000004544	csde1	100	92.525	ENSAOCG00000011510	csde1	99	91.468	Amphiprion_ocellaris
ENSGACG00000004544	csde1	100	94.856	ENSAPEG00000007194	csde1	99	92.647	Amphiprion_percula
ENSGACG00000004544	csde1	100	89.586	ENSATEG00000003864	csde1	99	89.586	Anabas_testudineus
ENSGACG00000004544	csde1	100	76.942	ENSAPLG00000008797	CSDE1	99	76.942	Anas_platyrhynchos
ENSGACG00000004544	csde1	100	79.625	ENSACAG00000003120	CSDE1	99	79.625	Anolis_carolinensis
ENSGACG00000004544	csde1	79	61.967	ENSANAG00000028396	-	93	61.967	Aotus_nancymaae
ENSGACG00000004544	csde1	100	77.375	ENSANAG00000024665	CSDE1	94	78.082	Aotus_nancymaae
ENSGACG00000004544	csde1	100	92.095	ENSACLG00000013296	csde1	99	92.095	Astatotilapia_calliptera
ENSGACG00000004544	csde1	100	83.354	ENSAMXG00000007436	csde1	99	83.354	Astyanax_mexicanus
ENSGACG00000004544	csde1	100	77.250	ENSBTAG00000000678	CSDE1	99	74.687	Bos_taurus
ENSGACG00000004544	csde1	100	77.500	ENSCJAG00000012565	CSDE1	94	77.500	Callithrix_jacchus
ENSGACG00000004544	csde1	98	75.479	ENSCAFG00000009618	CSDE1	94	75.479	Canis_familiaris
ENSGACG00000004544	csde1	100	75.313	ENSCAFG00020000481	CSDE1	99	75.313	Canis_lupus_dingo
ENSGACG00000004544	csde1	100	77.375	ENSCHIG00000017250	CSDE1	99	74.812	Capra_hircus
ENSGACG00000004544	csde1	100	77.625	ENSTSYG00000003747	CSDE1	99	77.625	Carlito_syrichta
ENSGACG00000004544	csde1	100	76.506	ENSCAPG00000015128	CSDE1	100	76.506	Cavia_aperea
ENSGACG00000004544	csde1	100	73.810	ENSCPOG00000040388	CSDE1	99	73.810	Cavia_porcellus
ENSGACG00000004544	csde1	95	57.346	ENSCCAG00000033677	-	99	57.346	Cebus_capucinus
ENSGACG00000004544	csde1	97	55.457	ENSCCAG00000030878	-	91	55.457	Cebus_capucinus
ENSGACG00000004544	csde1	100	77.500	ENSCCAG00000036794	CSDE1	99	77.500	Cebus_capucinus
ENSGACG00000004544	csde1	100	77.625	ENSCATG00000036962	CSDE1	97	75.063	Cercocebus_atys
ENSGACG00000004544	csde1	100	78.000	ENSCLAG00000006618	CSDE1	99	78.000	Chinchilla_lanigera
ENSGACG00000004544	csde1	100	77.625	ENSCSAG00000001658	CSDE1	94	77.625	Chlorocebus_sabaeus
ENSGACG00000004544	csde1	100	82.524	ENSCHOG00000000918	CSDE1	84	82.524	Choloepus_hoffmanni
ENSGACG00000004544	csde1	100	79.250	ENSCPBG00000016547	CSDE1	99	79.250	Chrysemys_picta_bellii
ENSGACG00000004544	csde1	98	43.190	ENSCING00000014465	-	96	43.190	Ciona_intestinalis
ENSGACG00000004544	csde1	97	42.402	ENSCSAVG00000008100	-	100	41.469	Ciona_savignyi
ENSGACG00000004544	csde1	100	77.625	ENSCANG00000035096	CSDE1	97	75.063	Colobus_angolensis_palliatus
ENSGACG00000004544	csde1	90	79.775	ENSCANG00000031069	-	93	79.775	Colobus_angolensis_palliatus
ENSGACG00000004544	csde1	100	61.404	ENSCGRG00001014011	-	99	61.404	Cricetulus_griseus_chok1gshd
ENSGACG00000004544	csde1	100	76.875	ENSCGRG00001016833	-	99	76.875	Cricetulus_griseus_chok1gshd
ENSGACG00000004544	csde1	97	73.719	ENSCGRG00000002225	-	99	73.719	Cricetulus_griseus_crigri
ENSGACG00000004544	csde1	100	65.251	ENSCGRG00000005831	-	99	65.251	Cricetulus_griseus_crigri
ENSGACG00000004544	csde1	100	88.537	ENSCSEG00000002620	csde1	99	87.955	Cynoglossus_semilaevis
ENSGACG00000004544	csde1	100	91.092	ENSCVAG00000001344	csde1	99	90.637	Cyprinodon_variegatus
ENSGACG00000004544	csde1	100	86.717	ENSDARG00000074758	csde1	99	86.717	Danio_rerio
ENSGACG00000004544	csde1	100	75.469	ENSDNOG00000010287	-	93	75.469	Dasypus_novemcinctus
ENSGACG00000004544	csde1	100	76.875	ENSDORG00000011609	Csde1	99	76.875	Dipodomys_ordii
ENSGACG00000004544	csde1	98	50.312	FBgn0263352	Unr	77	49.004	Drosophila_melanogaster
ENSGACG00000004544	csde1	99	58.897	ENSETEG00000013678	-	99	58.897	Echinops_telfairi
ENSGACG00000004544	csde1	93	80.488	ENSETEG00000002491	-	82	73.410	Echinops_telfairi
ENSGACG00000004544	csde1	91	66.465	ENSETEG00000006280	-	99	66.465	Echinops_telfairi
ENSGACG00000004544	csde1	75	53.769	ENSETEG00000007109	-	99	53.769	Echinops_telfairi
ENSGACG00000004544	csde1	99	55.788	ENSEBUG00000008647	csde1	99	54.057	Eptatretus_burgeri
ENSGACG00000004544	csde1	100	78.125	ENSEASG00005006284	CSDE1	99	78.125	Equus_asinus_asinus
ENSGACG00000004544	csde1	100	78.125	ENSECAG00000020885	CSDE1	99	78.125	Equus_caballus
ENSGACG00000004544	csde1	93	74.869	ENSEEUG00000006286	CSDE1	68	74.869	Erinaceus_europaeus
ENSGACG00000004544	csde1	100	86.303	ENSELUG00000015507	csde1	99	84.145	Esox_lucius
ENSGACG00000004544	csde1	100	77.875	ENSFCAG00000029266	CSDE1	99	75.313	Felis_catus
ENSGACG00000004544	csde1	100	79.375	ENSFALG00000003407	CSDE1	99	79.375	Ficedula_albicollis
ENSGACG00000004544	csde1	100	77.375	ENSFDAG00000007882	CSDE1	99	77.375	Fukomys_damarensis
ENSGACG00000004544	csde1	100	91.217	ENSFHEG00000010799	csde1	99	91.217	Fundulus_heteroclitus
ENSGACG00000004544	csde1	100	89.098	ENSGMOG00000012731	csde1	100	89.098	Gadus_morhua
ENSGACG00000004544	csde1	98	79.517	ENSGALG00000002139	CSDE1	98	79.517	Gallus_gallus
ENSGACG00000004544	csde1	95	87.427	ENSGAFG00000005241	csde1	95	87.427	Gambusia_affinis
ENSGACG00000004544	csde1	100	79.125	ENSGAGG00000017685	CSDE1	99	79.125	Gopherus_agassizii
ENSGACG00000004544	csde1	100	77.625	ENSGGOG00000002164	CSDE1	99	75.063	Gorilla_gorilla
ENSGACG00000004544	csde1	100	91.511	ENSHBUG00000020315	csde1	99	88.862	Haplochromis_burtoni
ENSGACG00000004544	csde1	99	66.162	ENSHGLG00000007471	-	98	66.162	Heterocephalus_glaber_female
ENSGACG00000004544	csde1	100	65.496	ENSHGLG00000019549	-	99	65.496	Heterocephalus_glaber_female
ENSGACG00000004544	csde1	100	62.578	ENSHGLG00000000650	-	99	62.578	Heterocephalus_glaber_female
ENSGACG00000004544	csde1	96	67.038	ENSHGLG00000010039	-	100	67.038	Heterocephalus_glaber_female
ENSGACG00000004544	csde1	100	71.250	ENSHGLG00000009620	-	99	71.375	Heterocephalus_glaber_female
ENSGACG00000004544	csde1	100	67.544	ENSHGLG00000003829	-	99	67.544	Heterocephalus_glaber_female
ENSGACG00000004544	csde1	97	68.619	ENSHGLG00000008555	-	99	68.619	Heterocephalus_glaber_female
ENSGACG00000004544	csde1	96	66.815	ENSHGLG00100006910	-	100	66.815	Heterocephalus_glaber_male
ENSGACG00000004544	csde1	94	63.418	ENSHGLG00100004195	-	100	63.418	Heterocephalus_glaber_male
ENSGACG00000004544	csde1	97	61.470	ENSHGLG00100004833	-	99	61.470	Heterocephalus_glaber_male
ENSGACG00000004544	csde1	100	61.857	ENSHGLG00100001846	-	99	61.882	Heterocephalus_glaber_male
ENSGACG00000004544	csde1	100	65.960	ENSHGLG00100002245	-	99	65.960	Heterocephalus_glaber_male
ENSGACG00000004544	csde1	100	77.625	ENSHGLG00100019438	-	99	77.625	Heterocephalus_glaber_male
ENSGACG00000004544	csde1	99	64.773	ENSHGLG00100007287	-	98	64.773	Heterocephalus_glaber_male
ENSGACG00000004544	csde1	100	63.283	ENSHGLG00100012072	-	98	64.437	Heterocephalus_glaber_male
ENSGACG00000004544	csde1	100	89.711	ENSHCOG00000004158	csde1	99	86.575	Hippocampus_comes
ENSGACG00000004544	csde1	100	82.103	ENSIPUG00000000355	csde1	99	82.103	Ictalurus_punctatus
ENSGACG00000004544	csde1	100	63.896	ENSSTOG00000030994	-	99	63.896	Ictidomys_tridecemlineatus
ENSGACG00000004544	csde1	93	60.853	ENSSTOG00000032722	-	98	60.853	Ictidomys_tridecemlineatus
ENSGACG00000004544	csde1	100	77.250	ENSJJAG00000019571	Csde1	99	77.250	Jaculus_jaculus
ENSGACG00000004544	csde1	100	89.763	ENSKMAG00000005685	csde1	99	89.317	Kryptolebias_marmoratus
ENSGACG00000004544	csde1	100	92.157	ENSLBEG00000014770	csde1	99	91.092	Labrus_bergylta
ENSGACG00000004544	csde1	100	76.420	ENSLACG00000018452	CSDE1	94	76.420	Latimeria_chalumnae
ENSGACG00000004544	csde1	100	85.696	ENSLOCG00000010413	csde1	94	85.696	Lepisosteus_oculatus
ENSGACG00000004544	csde1	100	74.561	ENSLAFG00000007150	CSDE1	96	74.561	Loxodonta_africana
ENSGACG00000004544	csde1	100	77.625	ENSMFAG00000003674	CSDE1	99	75.063	Macaca_fascicularis
ENSGACG00000004544	csde1	100	77.625	ENSMMUG00000001974	CSDE1	99	75.063	Macaca_mulatta
ENSGACG00000004544	csde1	100	77.625	ENSMNEG00000045247	CSDE1	97	75.063	Macaca_nemestrina
ENSGACG00000004544	csde1	100	77.375	ENSMLEG00000038673	CSDE1	94	77.375	Mandrillus_leucophaeus
ENSGACG00000004544	csde1	100	92.034	ENSMAMG00000008821	csde1	99	90.715	Mastacembelus_armatus
ENSGACG00000004544	csde1	100	92.095	ENSMZEG00005021675	csde1	99	88.833	Maylandia_zebra
ENSGACG00000004544	csde1	98	79.644	ENSMGAG00000016381	CSDE1	98	79.644	Meleagris_gallopavo
ENSGACG00000004544	csde1	100	76.875	ENSMAUG00000014031	Csde1	99	76.875	Mesocricetus_auratus
ENSGACG00000004544	csde1	100	77.500	ENSMICG00000002050	CSDE1	99	74.777	Microcebus_murinus
ENSGACG00000004544	csde1	100	76.875	ENSMOCG00000018960	Csde1	99	76.875	Microtus_ochrogaster
ENSGACG00000004544	csde1	100	90.590	ENSMMOG00000015075	csde1	99	90.590	Mola_mola
ENSGACG00000004544	csde1	100	78.875	ENSMODG00000004685	CSDE1	99	78.875	Monodelphis_domestica
ENSGACG00000004544	csde1	100	90.464	ENSMALG00000007132	csde1	99	90.464	Monopterus_albus
ENSGACG00000004544	csde1	100	77.000	MGP_CAROLIEiJ_G0025444	Csde1	92	90.196	Mus_caroli
ENSGACG00000004544	csde1	100	77.000	ENSMUSG00000068823	Csde1	97	84.932	Mus_musculus
ENSGACG00000004544	csde1	100	77.000	MGP_PahariEiJ_G0026888	Csde1	92	90.196	Mus_pahari
ENSGACG00000004544	csde1	100	77.000	MGP_SPRETEiJ_G0026394	Csde1	92	90.196	Mus_spretus
ENSGACG00000004544	csde1	98	78.089	ENSMPUG00000005753	CSDE1	99	78.089	Mustela_putorius_furo
ENSGACG00000004544	csde1	100	74.812	ENSMLUG00000005681	CSDE1	94	74.812	Myotis_lucifugus
ENSGACG00000004544	csde1	96	53.483	ENSNGAG00000012599	-	99	53.483	Nannospalax_galili
ENSGACG00000004544	csde1	100	77.000	ENSNGAG00000021929	Csde1	99	77.000	Nannospalax_galili
ENSGACG00000004544	csde1	100	88.833	ENSNBRG00000020808	csde1	99	88.833	Neolamprologus_brichardi
ENSGACG00000004544	csde1	100	77.625	ENSNLEG00000004842	CSDE1	97	75.063	Nomascus_leucogenys
ENSGACG00000004544	csde1	98	84.466	ENSMEUG00000002677	CSDE1	95	84.466	Notamacropus_eugenii
ENSGACG00000004544	csde1	98	82.524	ENSOPRG00000005002	CSDE1	76	82.524	Ochotona_princeps
ENSGACG00000004544	csde1	96	52.772	ENSODEG00000005979	-	97	52.772	Octodon_degus
ENSGACG00000004544	csde1	100	77.375	ENSODEG00000007383	-	99	77.375	Octodon_degus
ENSGACG00000004544	csde1	100	89.828	ENSONIG00000009309	csde1	99	89.828	Oreochromis_niloticus
ENSGACG00000004544	csde1	100	81.034	ENSOANG00000003346	-	82	81.034	Ornithorhynchus_anatinus
ENSGACG00000004544	csde1	100	77.250	ENSOCUG00000016438	CSDE1	94	77.250	Oryctolagus_cuniculus
ENSGACG00000004544	csde1	100	88.235	ENSORLG00000000707	csde1	99	88.235	Oryzias_latipes
ENSGACG00000004544	csde1	100	90.213	ENSORLG00020005148	csde1	99	88.113	Oryzias_latipes_hni
ENSGACG00000004544	csde1	100	90.213	ENSORLG00015019415	csde1	99	88.113	Oryzias_latipes_hsok
ENSGACG00000004544	csde1	100	90.464	ENSOMEG00000015656	csde1	99	88.358	Oryzias_melastigma
ENSGACG00000004544	csde1	100	75.313	ENSOGAG00000012127	CSDE1	94	75.313	Otolemur_garnettii
ENSGACG00000004544	csde1	100	74.812	ENSOARG00000020034	CSDE1	94	74.812	Ovis_aries
ENSGACG00000004544	csde1	100	77.625	ENSPPAG00000025861	CSDE1	99	75.063	Pan_paniscus
ENSGACG00000004544	csde1	100	77.875	ENSPPRG00000006747	CSDE1	94	77.875	Panthera_pardus
ENSGACG00000004544	csde1	100	77.875	ENSPTIG00000015468	CSDE1	99	77.875	Panthera_tigris_altaica
ENSGACG00000004544	csde1	100	77.625	ENSPTRG00000033721	CSDE1	99	77.625	Pan_troglodytes
ENSGACG00000004544	csde1	100	77.625	ENSPANG00000018873	CSDE1	99	75.063	Papio_anubis
ENSGACG00000004544	csde1	100	82.811	ENSPKIG00000009459	csde1	99	82.811	Paramormyrops_kingsleyae
ENSGACG00000004544	csde1	96	81.498	ENSPSIG00000003823	CSDE1	96	81.498	Pelodiscus_sinensis
ENSGACG00000004544	csde1	100	85.714	ENSPMGG00000000772	csde1	99	85.714	Periophthalmus_magnuspinnatus
ENSGACG00000004544	csde1	100	77.125	ENSPEMG00000020357	-	99	77.125	Peromyscus_maniculatus_bairdii
ENSGACG00000004544	csde1	100	78.875	ENSPCIG00000022587	CSDE1	99	78.875	Phascolarctos_cinereus
ENSGACG00000004544	csde1	97	89.408	ENSPFOG00000012664	csde1	99	90.031	Poecilia_formosa
ENSGACG00000004544	csde1	95	84.946	ENSPLAG00000017680	csde1	93	84.946	Poecilia_latipinna
ENSGACG00000004544	csde1	95	85.407	ENSPMEG00000005094	csde1	95	85.407	Poecilia_mexicana
ENSGACG00000004544	csde1	100	90.512	ENSPREG00000011631	csde1	99	87.575	Poecilia_reticulata
ENSGACG00000004544	csde1	100	77.500	ENSPPYG00000000996	CSDE1	99	77.500	Pongo_abelii
ENSGACG00000004544	csde1	100	83.495	ENSPCAG00000014368	CSDE1	90	83.495	Procavia_capensis
ENSGACG00000004544	csde1	90	70.480	ENSPCOG00000008223	-	92	70.480	Propithecus_coquereli
ENSGACG00000004544	csde1	100	77.750	ENSPCOG00000017893	CSDE1	99	77.750	Propithecus_coquereli
ENSGACG00000004544	csde1	100	70.050	ENSPVAG00000008225	CSDE1	94	70.050	Pteropus_vampyrus
ENSGACG00000004544	csde1	100	91.511	ENSPNYG00000013745	csde1	99	88.862	Pundamilia_nyererei
ENSGACG00000004544	csde1	100	87.610	ENSPNAG00000001958	csde1	99	84.230	Pygocentrus_nattereri
ENSGACG00000004544	csde1	100	76.875	ENSRNOG00000061058	Csde1	99	76.875	Rattus_norvegicus
ENSGACG00000004544	csde1	100	72.909	ENSRBIG00000038966	-	94	72.909	Rhinopithecus_bieti
ENSGACG00000004544	csde1	100	74.500	ENSRBIG00000038088	-	99	74.271	Rhinopithecus_bieti
ENSGACG00000004544	csde1	100	77.625	ENSRROG00000043101	CSDE1	97	75.063	Rhinopithecus_roxellana
ENSGACG00000004544	csde1	100	77.500	ENSSBOG00000035592	CSDE1	94	77.500	Saimiri_boliviensis_boliviensis
ENSGACG00000004544	csde1	100	76.316	ENSSHAG00000009831	CSDE1	99	76.316	Sarcophilus_harrisii
ENSGACG00000004544	csde1	100	83.791	ENSSFOG00015007498	csde1	99	83.915	Scleropages_formosus
ENSGACG00000004544	csde1	100	91.544	ENSSMAG00000007203	csde1	99	91.544	Scophthalmus_maximus
ENSGACG00000004544	csde1	100	92.892	ENSSDUG00000015380	csde1	99	91.719	Seriola_dumerili
ENSGACG00000004544	csde1	100	95.107	ENSSLDG00000008819	csde1	99	95.107	Seriola_lalandi_dorsalis
ENSGACG00000004544	csde1	100	74.812	ENSSARG00000000738	CSDE1	94	74.812	Sorex_araneus
ENSGACG00000004544	csde1	100	79.875	ENSSPUG00000008714	CSDE1	99	79.875	Sphenodon_punctatus
ENSGACG00000004544	csde1	100	94.981	ENSSPAG00000000716	csde1	99	91.719	Stegastes_partitus
ENSGACG00000004544	csde1	100	78.000	ENSSSCG00000006752	CSDE1	99	75.439	Sus_scrofa
ENSGACG00000004544	csde1	100	78.554	ENSTGUG00000000972	CSDE1	99	78.554	Taeniopygia_guttata
ENSGACG00000004544	csde1	100	83.689	ENSTRUG00000007996	csde1	99	83.689	Takifugu_rubripes
ENSGACG00000004544	csde1	93	94.253	ENSTNIG00000010878	csde1	100	94.253	Tetraodon_nigroviridis
ENSGACG00000004544	csde1	93	76.250	ENSTBEG00000011880	-	60	76.250	Tupaia_belangeri
ENSGACG00000004544	csde1	100	74.561	ENSTTRG00000015583	CSDE1	94	74.561	Tursiops_truncatus
ENSGACG00000004544	csde1	88	70.597	ENSUAMG00000024289	-	99	70.597	Ursus_americanus
ENSGACG00000004544	csde1	92	81.169	ENSUAMG00000021779	-	98	81.169	Ursus_americanus
ENSGACG00000004544	csde1	97	73.634	ENSUMAG00000011714	-	99	73.634	Ursus_maritimus
ENSGACG00000004544	csde1	100	69.048	ENSUMAG00000009720	-	97	69.048	Ursus_maritimus
ENSGACG00000004544	csde1	100	76.415	ENSVPAG00000000749	CSDE1	79	76.415	Vicugna_pacos
ENSGACG00000004544	csde1	93	76.856	ENSVVUG00000009890	CSDE1	94	76.856	Vulpes_vulpes
ENSGACG00000004544	csde1	100	78.207	ENSXETG00000021448	csde1	99	78.207	Xenopus_tropicalis
ENSGACG00000004544	csde1	95	88.525	ENSXCOG00000000035	csde1	88	88.525	Xiphophorus_couchianus
ENSGACG00000004544	csde1	100	91.217	ENSXMAG00000009080	csde1	99	88.659	Xiphophorus_maculatus