EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000005107 (Gene tree)
Gene ID: -
Gene Symbol: ssb
Alias: wu:fb17f11
Full Name: Sjogren syndrome antigen B (autoantigen La)
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 4539 bases
Position: chrgroupXVI:10411901-10416439
Accession: ZDB-GENE-030131-223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000006772	RRM_1	PF00076.22	4.2e-10	1	1
ENSGACP00000006775	RRM_3	PF08777.11	2.9e-26	1	1
ENSGACP00000006772	RRM_3	PF08777.11	3.3e-26	1	1
ENSGACP00000006775	La	PF05383.17	7.3e-21	1	1
ENSGACP00000006772	La	PF05383.17	9.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000006789	-	1697	-	ENSGACP00000006772	404 (aa)	-	G3NN59
ENSGACT00000006792	-	1568	-	ENSGACP00000006775	372 (aa)	-	G3NN62

Gene Model

Click here to download ENSGACG00000005107's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000005107's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000005107	ssb	100	53.735	ENSG00000138385	SSB	98	63.559	Homo_sapiens
ENSGACG00000005107	ssb	100	78.713	ENSAPOG00000003448	ssb	100	78.713	Acanthochromis_polyacanthus
ENSGACG00000005107	ssb	100	53.461	ENSAMEG00000010507	SSB	99	52.745	Ailuropoda_melanoleuca
ENSGACG00000005107	ssb	94	76.190	ENSACIG00000001738	ssb	97	76.984	Amphilophus_citrinellus
ENSGACG00000005107	ssb	100	79.703	ENSAOCG00000020398	ssb	100	79.703	Amphiprion_ocellaris
ENSGACG00000005107	ssb	100	79.703	ENSAPEG00000020395	ssb	100	79.703	Amphiprion_percula
ENSGACG00000005107	ssb	100	82.222	ENSATEG00000016884	ssb	100	82.222	Anabas_testudineus
ENSGACG00000005107	ssb	99	53.494	ENSAPLG00000006109	SSB	98	53.606	Anas_platyrhynchos
ENSGACG00000005107	ssb	100	52.518	ENSACAG00000017008	SSB	99	52.278	Anolis_carolinensis
ENSGACG00000005107	ssb	100	48.301	ENSANAG00000027195	-	99	48.301	Aotus_nancymaae
ENSGACG00000005107	ssb	100	75.062	ENSACLG00000010798	ssb	100	75.062	Astatotilapia_calliptera
ENSGACG00000005107	ssb	100	56.763	ENSAMXG00000012606	ssb	100	58.993	Astyanax_mexicanus
ENSGACG00000005107	ssb	100	55.340	ENSBTAG00000008716	SSB	99	54.988	Bos_taurus
ENSGACG00000005107	ssb	74	36.304	WBGene00016653	C44E4.4	76	36.304	Caenorhabditis_elegans
ENSGACG00000005107	ssb	100	54.369	ENSCJAG00000045073	SSB	99	53.883	Callithrix_jacchus
ENSGACG00000005107	ssb	100	54.106	ENSCAFG00000012418	SSB	99	53.753	Canis_familiaris
ENSGACG00000005107	ssb	100	54.106	ENSCAFG00020002900	SSB	99	53.753	Canis_lupus_dingo
ENSGACG00000005107	ssb	100	54.964	ENSCHIG00000022624	-	99	54.612	Capra_hircus
ENSGACG00000005107	ssb	100	51.961	ENSCHIG00000022196	-	99	51.716	Capra_hircus
ENSGACG00000005107	ssb	99	54.126	ENSTSYG00000000097	SSB	99	53.771	Carlito_syrichta
ENSGACG00000005107	ssb	100	55.206	ENSCPOG00000003338	SSB	99	54.854	Cavia_porcellus
ENSGACG00000005107	ssb	100	54.369	ENSCCAG00000035147	SSB	99	53.883	Cebus_capucinus
ENSGACG00000005107	ssb	72	49.832	ENSCATG00000036701	SSB	83	49.158	Cercocebus_atys
ENSGACG00000005107	ssb	99	43.432	ENSCATG00000042909	-	97	42.895	Cercocebus_atys
ENSGACG00000005107	ssb	100	54.479	ENSCLAG00000015617	-	99	54.126	Chinchilla_lanigera
ENSGACG00000005107	ssb	99	49.507	ENSCSAG00000018390	-	100	49.015	Chlorocebus_sabaeus
ENSGACG00000005107	ssb	100	54.479	ENSCSAG00000015200	SSB	88	53.883	Chlorocebus_sabaeus
ENSGACG00000005107	ssb	100	54.722	ENSCHOG00000007763	SSB	99	54.369	Choloepus_hoffmanni
ENSGACG00000005107	ssb	99	56.968	ENSCPBG00000006519	SSB	98	57.457	Chrysemys_picta_bellii
ENSGACG00000005107	ssb	92	44.086	ENSCANG00000028838	-	85	43.280	Colobus_angolensis_palliatus
ENSGACG00000005107	ssb	100	54.479	ENSCANG00000027695	SSB	99	53.883	Colobus_angolensis_palliatus
ENSGACG00000005107	ssb	100	48.418	ENSCANG00000033240	-	99	47.689	Colobus_angolensis_palliatus
ENSGACG00000005107	ssb	100	50.000	ENSCGRG00001024831	Ssb	99	50.976	Cricetulus_griseus_chok1gshd
ENSGACG00000005107	ssb	100	50.000	ENSCGRG00000005387	Ssb	99	50.976	Cricetulus_griseus_crigri
ENSGACG00000005107	ssb	99	78.465	ENSCSEG00000011599	ssb	99	78.465	Cynoglossus_semilaevis
ENSGACG00000005107	ssb	100	80.000	ENSCVAG00000021558	ssb	100	79.012	Cyprinodon_variegatus
ENSGACG00000005107	ssb	100	58.394	ENSDARG00000029252	ssb	100	60.145	Danio_rerio
ENSGACG00000005107	ssb	100	54.722	ENSDNOG00000013450	SSB	99	54.369	Dasypus_novemcinctus
ENSGACG00000005107	ssb	100	52.696	ENSDORG00000005543	Ssb	99	50.735	Dipodomys_ordii
ENSGACG00000005107	ssb	84	33.898	FBgn0011638	La	81	34.234	Drosophila_melanogaster
ENSGACG00000005107	ssb	50	62.376	ENSETEG00000004614	-	52	62.376	Echinops_telfairi
ENSGACG00000005107	ssb	99	42.680	ENSEBUG00000001237	ssb	97	40.695	Eptatretus_burgeri
ENSGACG00000005107	ssb	100	55.448	ENSEASG00005022835	SSB	99	55.097	Equus_asinus_asinus
ENSGACG00000005107	ssb	100	55.448	ENSECAG00000018495	SSB	99	55.097	Equus_caballus
ENSGACG00000005107	ssb	75	48.052	ENSEEUG00000008077	SSB	78	47.727	Erinaceus_europaeus
ENSGACG00000005107	ssb	100	68.049	ENSELUG00000020929	ssb	100	67.805	Esox_lucius
ENSGACG00000005107	ssb	100	54.831	ENSFCAG00000011601	SSB	99	54.479	Felis_catus
ENSGACG00000005107	ssb	99	55.037	ENSFALG00000000930	SSB	97	55.882	Ficedula_albicollis
ENSGACG00000005107	ssb	100	54.964	ENSFDAG00000000598	SSB	99	54.612	Fukomys_damarensis
ENSGACG00000005107	ssb	73	66.544	ENSFHEG00000003268	ssb	95	71.530	Fundulus_heteroclitus
ENSGACG00000005107	ssb	99	71.000	ENSGMOG00000002664	ssb	100	71.000	Gadus_morhua
ENSGACG00000005107	ssb	99	55.257	ENSGALG00000009677	SSB	97	55.147	Gallus_gallus
ENSGACG00000005107	ssb	100	76.528	ENSGAFG00000002749	ssb	100	77.262	Gambusia_affinis
ENSGACG00000005107	ssb	99	56.479	ENSGAGG00000007807	SSB	98	56.968	Gopherus_agassizii
ENSGACG00000005107	ssb	100	46.117	ENSGGOG00000024891	-	99	45.146	Gorilla_gorilla
ENSGACG00000005107	ssb	60	47.414	ENSGGOG00000023471	-	89	47.577	Gorilla_gorilla
ENSGACG00000005107	ssb	100	75.556	ENSHBUG00000006584	ssb	100	75.556	Haplochromis_burtoni
ENSGACG00000005107	ssb	100	55.097	ENSHGLG00000017580	-	99	55.097	Heterocephalus_glaber_female
ENSGACG00000005107	ssb	100	49.265	ENSHGLG00000005832	-	99	48.649	Heterocephalus_glaber_female
ENSGACG00000005107	ssb	98	49.630	ENSHGLG00000004478	-	97	49.136	Heterocephalus_glaber_female
ENSGACG00000005107	ssb	100	55.097	ENSHGLG00100003084	-	99	55.097	Heterocephalus_glaber_male
ENSGACG00000005107	ssb	100	49.631	ENSHGLG00100008767	-	99	49.631	Heterocephalus_glaber_male
ENSGACG00000005107	ssb	52	43.415	ENSHGLG00100008353	-	93	43.415	Heterocephalus_glaber_male
ENSGACG00000005107	ssb	99	71.891	ENSHCOG00000019011	ssb	99	71.393	Hippocampus_comes
ENSGACG00000005107	ssb	100	59.472	ENSIPUG00000003681	SSB	100	60.000	Ictalurus_punctatus
ENSGACG00000005107	ssb	100	53.883	ENSSTOG00000008416	SSB	99	53.883	Ictidomys_tridecemlineatus
ENSGACG00000005107	ssb	100	50.119	ENSJJAG00000023158	-	99	49.165	Jaculus_jaculus
ENSGACG00000005107	ssb	89	44.384	ENSJJAG00000016250	-	94	43.132	Jaculus_jaculus
ENSGACG00000005107	ssb	100	78.713	ENSKMAG00000017317	ssb	100	79.208	Kryptolebias_marmoratus
ENSGACG00000005107	ssb	100	82.921	ENSLBEG00000017345	ssb	100	82.921	Labrus_bergylta
ENSGACG00000005107	ssb	99	54.523	ENSLACG00000014056	SSB	98	55.012	Latimeria_chalumnae
ENSGACG00000005107	ssb	100	61.501	ENSLOCG00000007933	ssb	99	61.743	Lepisosteus_oculatus
ENSGACG00000005107	ssb	99	48.267	ENSLAFG00000028909	-	97	47.525	Loxodonta_africana
ENSGACG00000005107	ssb	100	52.732	ENSLAFG00000000867	-	99	53.444	Loxodonta_africana
ENSGACG00000005107	ssb	74	44.631	ENSLAFG00000026721	-	98	43.624	Loxodonta_africana
ENSGACG00000005107	ssb	100	54.369	ENSMFAG00000039066	SSB	99	53.883	Macaca_fascicularis
ENSGACG00000005107	ssb	87	49.435	ENSMFAG00000041478	-	92	50.898	Macaca_fascicularis
ENSGACG00000005107	ssb	100	46.959	ENSMMUG00000011724	-	97	46.329	Macaca_mulatta
ENSGACG00000005107	ssb	99	41.192	ENSMMUG00000039889	-	98	40.933	Macaca_mulatta
ENSGACG00000005107	ssb	100	54.369	ENSMMUG00000023051	SSB	99	53.883	Macaca_mulatta
ENSGACG00000005107	ssb	87	49.435	ENSMNEG00000034698	-	92	50.898	Macaca_nemestrina
ENSGACG00000005107	ssb	100	46.394	ENSMNEG00000028321	SSB	85	66.087	Macaca_nemestrina
ENSGACG00000005107	ssb	100	38.200	ENSMLEG00000042644	-	99	37.713	Mandrillus_leucophaeus
ENSGACG00000005107	ssb	100	54.369	ENSMLEG00000035717	SSB	88	66.087	Mandrillus_leucophaeus
ENSGACG00000005107	ssb	100	79.703	ENSMAMG00000004800	ssb	100	79.703	Mastacembelus_armatus
ENSGACG00000005107	ssb	100	75.062	ENSMZEG00005005749	ssb	100	75.062	Maylandia_zebra
ENSGACG00000005107	ssb	99	55.501	ENSMGAG00000010328	SSB	92	64.737	Meleagris_gallopavo
ENSGACG00000005107	ssb	94	52.208	ENSMICG00000033304	-	94	51.979	Microcebus_murinus
ENSGACG00000005107	ssb	100	54.722	ENSMICG00000028252	-	99	54.369	Microcebus_murinus
ENSGACG00000005107	ssb	100	45.932	ENSMODG00000007027	-	99	46.457	Monodelphis_domestica
ENSGACG00000005107	ssb	93	50.575	ENSMODG00000019271	-	99	48.549	Monodelphis_domestica
ENSGACG00000005107	ssb	94	53.525	ENSMODG00000008227	-	99	52.439	Monodelphis_domestica
ENSGACG00000005107	ssb	92	77.628	ENSMALG00000008045	ssb	90	79.630	Monopterus_albus
ENSGACG00000005107	ssb	100	51.799	MGP_CAROLIEiJ_G0023629	-	98	64.331	Mus_caroli
ENSGACG00000005107	ssb	100	51.799	ENSMUSG00000068882	Ssb	98	64.331	Mus_musculus
ENSGACG00000005107	ssb	100	51.442	MGP_PahariEiJ_G0025081	-	98	63.694	Mus_pahari
ENSGACG00000005107	ssb	100	51.799	MGP_SPRETEiJ_G0024551	Ssb	98	64.331	Mus_spretus
ENSGACG00000005107	ssb	100	55.206	ENSMPUG00000000785	SSB	99	54.854	Mustela_putorius_furo
ENSGACG00000005107	ssb	100	54.177	ENSMLUG00000016316	SSB	99	54.458	Myotis_lucifugus
ENSGACG00000005107	ssb	100	75.369	ENSNBRG00000012661	ssb	100	75.369	Neolamprologus_brichardi
ENSGACG00000005107	ssb	84	44.023	ENSNLEG00000028754	-	79	44.012	Nomascus_leucogenys
ENSGACG00000005107	ssb	100	54.126	ENSNLEG00000004958	SSB	99	53.641	Nomascus_leucogenys
ENSGACG00000005107	ssb	62	62.000	ENSMEUG00000001650	-	100	62.000	Notamacropus_eugenii
ENSGACG00000005107	ssb	94	53.562	ENSODEG00000004202	-	99	52.770	Octodon_degus
ENSGACG00000005107	ssb	100	76.601	ENSONIG00000008776	ssb	100	76.601	Oreochromis_niloticus
ENSGACG00000005107	ssb	100	53.398	ENSOANG00000008543	SSB	99	53.398	Ornithorhynchus_anatinus
ENSGACG00000005107	ssb	100	54.854	ENSOCUG00000010396	SSB	99	53.883	Oryctolagus_cuniculus
ENSGACG00000005107	ssb	100	76.601	ENSORLG00000017208	ssb	100	76.601	Oryzias_latipes
ENSGACG00000005107	ssb	100	76.413	ENSORLG00020022574	ssb	100	76.413	Oryzias_latipes_hni
ENSGACG00000005107	ssb	100	77.094	ENSORLG00015016592	ssb	100	77.094	Oryzias_latipes_hsok
ENSGACG00000005107	ssb	100	76.904	ENSOMEG00000003193	ssb	100	78.133	Oryzias_melastigma
ENSGACG00000005107	ssb	100	53.791	ENSOGAG00000029768	SSB	99	53.207	Otolemur_garnettii
ENSGACG00000005107	ssb	100	54.964	ENSOARG00000002906	SSB	99	54.612	Ovis_aries
ENSGACG00000005107	ssb	87	44.818	ENSPPAG00000006189	-	89	43.820	Pan_paniscus
ENSGACG00000005107	ssb	100	47.087	ENSPPAG00000032427	-	100	59.690	Pan_paniscus
ENSGACG00000005107	ssb	100	53.735	ENSPPAG00000042673	SSB	99	53.253	Pan_paniscus
ENSGACG00000005107	ssb	100	54.831	ENSPPRG00000006599	SSB	99	54.479	Panthera_pardus
ENSGACG00000005107	ssb	100	54.831	ENSPTIG00000011021	SSB	97	54.479	Panthera_tigris_altaica
ENSGACG00000005107	ssb	100	44.417	ENSPTRG00000042880	-	99	43.932	Pan_troglodytes
ENSGACG00000005107	ssb	100	53.735	ENSPTRG00000012620	SSB	99	53.253	Pan_troglodytes
ENSGACG00000005107	ssb	100	54.369	ENSPANG00000007440	SSB	99	53.883	Papio_anubis
ENSGACG00000005107	ssb	96	37.975	ENSPANG00000031877	-	75	40.810	Papio_anubis
ENSGACG00000005107	ssb	99	40.214	ENSPANG00000034126	-	97	40.214	Papio_anubis
ENSGACG00000005107	ssb	100	65.196	ENSPKIG00000019325	ssb	99	66.176	Paramormyrops_kingsleyae
ENSGACG00000005107	ssb	99	56.479	ENSPSIG00000002265	SSB	91	57.213	Pelodiscus_sinensis
ENSGACG00000005107	ssb	88	71.148	ENSPMGG00000020075	ssb	91	71.709	Periophthalmus_magnuspinnatus
ENSGACG00000005107	ssb	94	41.146	ENSPMAG00000002982	ssb	88	45.974	Petromyzon_marinus
ENSGACG00000005107	ssb	94	56.168	ENSPCIG00000028591	-	99	55.340	Phascolarctos_cinereus
ENSGACG00000005107	ssb	100	77.833	ENSPFOG00000009650	ssb	100	77.833	Poecilia_formosa
ENSGACG00000005107	ssb	100	77.340	ENSPLAG00000020498	ssb	100	77.941	Poecilia_latipinna
ENSGACG00000005107	ssb	100	77.833	ENSPMEG00000001051	ssb	100	77.833	Poecilia_mexicana
ENSGACG00000005107	ssb	93	77.394	ENSPREG00000003708	ssb	97	77.394	Poecilia_reticulata
ENSGACG00000005107	ssb	100	54.126	ENSPPYG00000012919	SSB	99	53.641	Pongo_abelii
ENSGACG00000005107	ssb	95	52.564	ENSPCAG00000010276	SSB	99	52.821	Procavia_capensis
ENSGACG00000005107	ssb	100	51.938	ENSPCOG00000023189	-	99	51.554	Propithecus_coquereli
ENSGACG00000005107	ssb	100	52.427	ENSPCOG00000015741	-	92	63.793	Propithecus_coquereli
ENSGACG00000005107	ssb	88	57.143	ENSPVAG00000006615	SSB	98	57.143	Pteropus_vampyrus
ENSGACG00000005107	ssb	100	75.556	ENSPNYG00000006444	ssb	100	75.556	Pundamilia_nyererei
ENSGACG00000005107	ssb	100	56.490	ENSPNAG00000011708	ssb	100	58.234	Pygocentrus_nattereri
ENSGACG00000005107	ssb	100	50.245	ENSRNOG00000011606	AABR07061825.1	99	49.386	Rattus_norvegicus
ENSGACG00000005107	ssb	100	50.600	ENSRNOG00000007998	Ssb	99	49.880	Rattus_norvegicus
ENSGACG00000005107	ssb	94	46.739	ENSRBIG00000041232	-	88	57.554	Rhinopithecus_bieti
ENSGACG00000005107	ssb	99	41.979	ENSRBIG00000029918	-	97	41.444	Rhinopithecus_bieti
ENSGACG00000005107	ssb	100	48.571	ENSRBIG00000041972	SSB	88	66.087	Rhinopithecus_bieti
ENSGACG00000005107	ssb	87	49.020	ENSRBIG00000041608	-	94	49.157	Rhinopithecus_bieti
ENSGACG00000005107	ssb	99	44.335	ENSRROG00000007149	-	97	43.842	Rhinopithecus_roxellana
ENSGACG00000005107	ssb	100	54.479	ENSRROG00000040346	SSB	99	53.883	Rhinopithecus_roxellana
ENSGACG00000005107	ssb	87	51.821	ENSRROG00000034102	-	85	51.124	Rhinopithecus_roxellana
ENSGACG00000005107	ssb	98	47.273	ENSRROG00000031684	-	88	60.135	Rhinopithecus_roxellana
ENSGACG00000005107	ssb	100	54.126	ENSSBOG00000027204	SSB	99	53.641	Saimiri_boliviensis_boliviensis
ENSGACG00000005107	ssb	100	54.612	ENSSHAG00000018062	SSB	99	55.583	Sarcophilus_harrisii
ENSGACG00000005107	ssb	100	63.835	ENSSFOG00015000550	ssb	99	64.078	Scleropages_formosus
ENSGACG00000005107	ssb	100	77.723	ENSSMAG00000013885	ssb	99	82.713	Scophthalmus_maximus
ENSGACG00000005107	ssb	100	82.673	ENSSDUG00000020117	ssb	100	82.673	Seriola_dumerili
ENSGACG00000005107	ssb	100	77.228	ENSSLDG00000002525	ssb	100	77.723	Seriola_lalandi_dorsalis
ENSGACG00000005107	ssb	95	49.744	ENSSARG00000007747	SSB	99	48.974	Sorex_araneus
ENSGACG00000005107	ssb	99	55.774	ENSSPUG00000012112	SSB	98	56.020	Sphenodon_punctatus
ENSGACG00000005107	ssb	100	78.960	ENSSPAG00000005696	ssb	100	78.960	Stegastes_partitus
ENSGACG00000005107	ssb	98	51.128	ENSSSCG00000015938	SSB	97	50.877	Sus_scrofa
ENSGACG00000005107	ssb	94	55.297	ENSTGUG00000007942	SSB	97	55.746	Taeniopygia_guttata
ENSGACG00000005107	ssb	100	77.475	ENSTRUG00000017839	ssb	100	77.970	Takifugu_rubripes
ENSGACG00000005107	ssb	92	74.263	ENSTNIG00000000915	ssb	100	73.995	Tetraodon_nigroviridis
ENSGACG00000005107	ssb	89	66.087	ENSTBEG00000009056	SSB	81	66.087	Tupaia_belangeri
ENSGACG00000005107	ssb	100	55.072	ENSTTRG00000002152	SSB	99	53.995	Tursiops_truncatus
ENSGACG00000005107	ssb	93	56.053	ENSUAMG00000027833	SSB	97	55.673	Ursus_americanus
ENSGACG00000005107	ssb	100	54.348	ENSUMAG00000013907	SSB	99	53.995	Ursus_maritimus
ENSGACG00000005107	ssb	100	54.479	ENSVPAG00000007183	SSB	99	54.390	Vicugna_pacos
ENSGACG00000005107	ssb	100	54.106	ENSVVUG00000016573	SSB	77	53.753	Vulpes_vulpes
ENSGACG00000005107	ssb	99	49.539	ENSXETG00000025402	ssb	99	50.000	Xenopus_tropicalis
ENSGACG00000005107	ssb	93	71.809	ENSXCOG00000019109	ssb	97	71.809	Xiphophorus_couchianus
ENSGACG00000005107	ssb	100	75.061	ENSXMAG00000004888	ssb	100	75.061	Xiphophorus_maculatus