EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000005341 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: im:7148349|si:ch211-125c5.1
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 23336 bases
Position: chrgroupXII:5865233-5888568
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000007070	RRM_5	PF13893.6	1.7e-07	1	2
ENSGACP00000007070	RRM_5	PF13893.6	1.7e-07	2	2
ENSGACP00000007070	RRM_1	PF00076.22	3.7e-39	1	3
ENSGACP00000007070	RRM_1	PF00076.22	3.7e-39	2	3
ENSGACP00000007070	RRM_1	PF00076.22	3.7e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000007088	-	10317	-	ENSGACP00000007070	3438 (aa)	-	G3NP06

Gene Model

Click here to download ENSGACG00000005341's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000005341's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000005341	-	100	41.713	ENSGACG00000001176	si:ch1073-335m2.2	96	80.233

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000005341	-	99	46.885	ENSG00000065526	SPEN	85	90.873	Homo_sapiens
ENSGACG00000005341	-	95	78.610	ENSAPOG00000011411	si:ch1073-335m2.2	98	78.723	Acanthochromis_polyacanthus
ENSGACG00000005341	-	100	78.021	ENSAPOG00000009853	-	90	92.453	Acanthochromis_polyacanthus
ENSGACG00000005341	-	70	58.140	ENSAMEG00000011817	SPEN	96	46.879	Ailuropoda_melanoleuca
ENSGACG00000005341	-	100	77.987	ENSAOCG00000014505	-	100	77.999	Amphiprion_ocellaris
ENSGACG00000005341	-	84	74.237	ENSAOCG00000008077	si:ch1073-335m2.2	97	72.571	Amphiprion_ocellaris
ENSGACG00000005341	-	95	77.895	ENSAPEG00000013515	si:ch1073-335m2.2	98	77.895	Amphiprion_percula
ENSGACG00000005341	-	100	77.937	ENSAPEG00000010288	-	100	77.965	Amphiprion_percula
ENSGACG00000005341	-	70	78.075	ENSATEG00000007674	si:ch1073-335m2.2	73	78.919	Anabas_testudineus
ENSGACG00000005341	-	100	77.578	ENSATEG00000005627	-	100	77.242	Anabas_testudineus
ENSGACG00000005341	-	99	47.042	ENSAPLG00000012618	SPEN	100	47.038	Anas_platyrhynchos
ENSGACG00000005341	-	57	50.759	ENSACAG00000013761	SPEN	96	50.616	Anolis_carolinensis
ENSGACG00000005341	-	99	46.851	ENSANAG00000034428	SPEN	96	47.175	Aotus_nancymaae
ENSGACG00000005341	-	52	76.410	ENSACLG00000021433	si:ch1073-335m2.2	52	76.410	Astatotilapia_calliptera
ENSGACG00000005341	-	100	75.105	ENSACLG00000016922	-	100	75.217	Astatotilapia_calliptera
ENSGACG00000005341	-	99	86.034	ENSAMXG00000012485	spen	100	54.405	Astyanax_mexicanus
ENSGACG00000005341	-	99	46.485	ENSBTAG00000018729	SPEN	97	46.118	Bos_taurus
ENSGACG00000005341	-	99	47.000	ENSCJAG00000008527	SPEN	97	47.128	Callithrix_jacchus
ENSGACG00000005341	-	86	53.667	ENSCAFG00000016132	-	92	53.617	Canis_familiaris
ENSGACG00000005341	-	99	46.264	ENSCHIG00000025070	SPEN	97	46.272	Capra_hircus
ENSGACG00000005341	-	91	42.508	ENSTSYG00000036016	SPEN	96	43.496	Carlito_syrichta
ENSGACG00000005341	-	91	48.282	ENSCAPG00000013803	SPEN	97	46.557	Cavia_aperea
ENSGACG00000005341	-	91	48.284	ENSCPOG00000014036	SPEN	96	46.749	Cavia_porcellus
ENSGACG00000005341	-	99	41.592	ENSCCAG00000020258	SPEN	97	41.754	Cebus_capucinus
ENSGACG00000005341	-	95	85.185	ENSCATG00000015079	SPEN	97	79.730	Cercocebus_atys
ENSGACG00000005341	-	89	48.358	ENSCLAG00000002018	SPEN	89	48.122	Chinchilla_lanigera
ENSGACG00000005341	-	100	47.215	ENSCSAG00000000841	SPEN	97	47.547	Chlorocebus_sabaeus
ENSGACG00000005341	-	100	47.126	ENSCPBG00000010477	SPEN	100	47.193	Chrysemys_picta_bellii
ENSGACG00000005341	-	99	45.530	ENSCANG00000034547	SPEN	97	45.861	Colobus_angolensis_palliatus
ENSGACG00000005341	-	99	46.389	ENSCGRG00001007725	Spen	98	46.342	Cricetulus_griseus_chok1gshd
ENSGACG00000005341	-	99	44.917	ENSCGRG00000010581	Spen	98	44.543	Cricetulus_griseus_crigri
ENSGACG00000005341	-	100	71.084	ENSCSEG00000003915	-	100	71.247	Cynoglossus_semilaevis
ENSGACG00000005341	-	100	70.449	ENSCVAG00000016346	-	100	70.534	Cyprinodon_variegatus
ENSGACG00000005341	-	97	78.610	ENSCVAG00000009075	si:ch1073-335m2.2	99	78.610	Cyprinodon_variegatus
ENSGACG00000005341	-	100	52.435	ENSDARG00000074245	spen	100	91.111	Danio_rerio
ENSGACG00000005341	-	84	60.311	ENSDARG00000074332	si:ch1073-335m2.2	87	60.311	Danio_rerio
ENSGACG00000005341	-	99	46.827	ENSDNOG00000041948	SPEN	96	46.722	Dasypus_novemcinctus
ENSGACG00000005341	-	99	44.777	ENSDORG00000023909	Spen	97	44.473	Dipodomys_ordii
ENSGACG00000005341	-	95	85.294	ENSEASG00005015911	SPEN	96	80.405	Equus_asinus_asinus
ENSGACG00000005341	-	95	85.294	ENSECAG00000008833	SPEN	96	80.405	Equus_caballus
ENSGACG00000005341	-	56	88.372	ENSEEUG00000010255	SPEN	57	88.372	Erinaceus_europaeus
ENSGACG00000005341	-	98	80.978	ENSELUG00000007726	si:ch1073-335m2.2	99	80.978	Esox_lucius
ENSGACG00000005341	-	55	45.792	ENSFALG00000003551	SPEN	100	44.448	Ficedula_albicollis
ENSGACG00000005341	-	88	48.774	ENSFDAG00000010212	SPEN	96	45.721	Fukomys_damarensis
ENSGACG00000005341	-	70	78.610	ENSFHEG00000004544	si:ch1073-335m2.2	71	78.610	Fundulus_heteroclitus
ENSGACG00000005341	-	100	61.728	ENSGMOG00000008397	-	98	90.217	Gadus_morhua
ENSGACG00000005341	-	100	47.594	ENSGALG00000036932	SPEN	99	47.767	Gallus_gallus
ENSGACG00000005341	-	70	77.540	ENSGAFG00000021570	si:ch1073-335m2.2	100	78.378	Gambusia_affinis
ENSGACG00000005341	-	100	71.441	ENSGAFG00000015819	-	90	87.547	Gambusia_affinis
ENSGACG00000005341	-	100	48.005	ENSGAGG00000020785	SPEN	100	48.076	Gopherus_agassizii
ENSGACG00000005341	-	99	46.921	ENSGGOG00000012041	SPEN	97	47.486	Gorilla_gorilla
ENSGACG00000005341	-	80	76.650	ENSHBUG00000023253	si:ch1073-335m2.2	85	76.650	Haplochromis_burtoni
ENSGACG00000005341	-	100	75.379	ENSHBUG00000020626	-	100	75.407	Haplochromis_burtoni
ENSGACG00000005341	-	81	58.181	ENSHGLG00000019259	SPEN	84	57.998	Heterocephalus_glaber_female
ENSGACG00000005341	-	67	57.881	ENSHGLG00100019294	SPEN	75	57.687	Heterocephalus_glaber_male
ENSGACG00000005341	-	94	73.103	ENSHCOG00000006004	si:ch1073-335m2.2	99	74.126	Hippocampus_comes
ENSGACG00000005341	-	100	51.915	ENSIPUG00000021668	spen	100	51.899	Ictalurus_punctatus
ENSGACG00000005341	-	91	74.444	ENSIPUG00000018212	si:ch1073-335m2.2	64	74.444	Ictalurus_punctatus
ENSGACG00000005341	-	99	45.405	ENSSTOG00000021428	SPEN	97	45.695	Ictidomys_tridecemlineatus
ENSGACG00000005341	-	99	47.010	ENSJJAG00000010882	Spen	98	47.080	Jaculus_jaculus
ENSGACG00000005341	-	100	72.508	ENSKMAG00000003882	-	100	72.704	Kryptolebias_marmoratus
ENSGACG00000005341	-	93	77.540	ENSKMAG00000021725	si:ch1073-335m2.2	97	77.540	Kryptolebias_marmoratus
ENSGACG00000005341	-	51	83.735	ENSLBEG00000020855	si:ch1073-335m2.2	51	83.735	Labrus_bergylta
ENSGACG00000005341	-	85	74.376	ENSLBEG00000019129	-	100	74.343	Labrus_bergylta
ENSGACG00000005341	-	96	84.568	ENSLACG00000003258	SPEN	99	84.568	Latimeria_chalumnae
ENSGACG00000005341	-	100	52.294	ENSLOCG00000007896	si:ch1073-335m2.2	100	53.505	Lepisosteus_oculatus
ENSGACG00000005341	-	99	45.784	ENSLAFG00000004524	SPEN	97	45.793	Loxodonta_africana
ENSGACG00000005341	-	99	46.956	ENSMFAG00000041974	SPEN	97	47.365	Macaca_fascicularis
ENSGACG00000005341	-	99	47.027	ENSMMUG00000008026	SPEN	97	47.401	Macaca_mulatta
ENSGACG00000005341	-	99	46.989	ENSMNEG00000042402	SPEN	97	47.399	Macaca_nemestrina
ENSGACG00000005341	-	99	46.461	ENSMLEG00000039293	SPEN	97	46.787	Mandrillus_leucophaeus
ENSGACG00000005341	-	98	77.540	ENSMAMG00000023870	si:ch1073-335m2.2	99	77.540	Mastacembelus_armatus
ENSGACG00000005341	-	90	74.364	ENSMZEG00005021491	-	99	74.458	Maylandia_zebra
ENSGACG00000005341	-	52	76.410	ENSMZEG00005011762	si:ch1073-335m2.2	52	76.410	Maylandia_zebra
ENSGACG00000005341	-	99	45.656	ENSMAUG00000008318	Spen	97	45.878	Mesocricetus_auratus
ENSGACG00000005341	-	99	46.535	ENSMICG00000030994	SPEN	96	46.595	Microcebus_murinus
ENSGACG00000005341	-	99	45.490	ENSMOCG00000016083	Spen	97	45.848	Microtus_ochrogaster
ENSGACG00000005341	-	77	78.488	ENSMMOG00000021742	si:ch1073-335m2.2	97	78.488	Mola_mola
ENSGACG00000005341	-	100	45.782	ENSMODG00000003411	SPEN	100	45.672	Monodelphis_domestica
ENSGACG00000005341	-	100	78.061	ENSMALG00000008625	-	100	78.229	Monopterus_albus
ENSGACG00000005341	-	70	58.712	MGP_CAROLIEiJ_G0026745	Spen	97	46.429	Mus_caroli
ENSGACG00000005341	-	70	58.395	ENSMUSG00000040761	Spen	69	58.395	Mus_musculus
ENSGACG00000005341	-	70	58.033	MGP_PahariEiJ_G0029076	Spen	69	57.972	Mus_pahari
ENSGACG00000005341	-	89	49.491	MGP_SPRETEiJ_G0027724	Spen	69	58.712	Mus_spretus
ENSGACG00000005341	-	98	45.455	ENSMPUG00000016317	SPEN	96	45.505	Mustela_putorius_furo
ENSGACG00000005341	-	93	87.097	ENSMLUG00000010144	SPEN	93	87.097	Myotis_lucifugus
ENSGACG00000005341	-	96	49.266	ENSNGAG00000000641	Spen	98	49.305	Nannospalax_galili
ENSGACG00000005341	-	86	73.653	ENSNBRG00000022090	-	100	73.752	Neolamprologus_brichardi
ENSGACG00000005341	-	99	46.106	ENSNLEG00000007652	SPEN	97	46.812	Nomascus_leucogenys
ENSGACG00000005341	-	90	82.292	ENSMEUG00000002422	SPEN	90	82.292	Notamacropus_eugenii
ENSGACG00000005341	-	66	68.934	ENSOPRG00000015800	SPEN	81	68.934	Ochotona_princeps
ENSGACG00000005341	-	100	43.842	ENSODEG00000016644	SPEN	100	44.005	Octodon_degus
ENSGACG00000005341	-	100	75.948	ENSONIG00000006573	-	99	92.532	Oreochromis_niloticus
ENSGACG00000005341	-	51	78.075	ENSORLG00000018414	si:ch1073-335m2.2	99	78.919	Oryzias_latipes
ENSGACG00000005341	-	88	62.400	ENSORLG00000028894	-	100	62.240	Oryzias_latipes
ENSGACG00000005341	-	51	78.075	ENSORLG00020009351	si:ch1073-335m2.2	99	78.919	Oryzias_latipes_hni
ENSGACG00000005341	-	88	62.762	ENSORLG00020007735	-	100	62.601	Oryzias_latipes_hni
ENSGACG00000005341	-	100	64.593	ENSORLG00015022085	-	100	64.424	Oryzias_latipes_hsok
ENSGACG00000005341	-	53	83.333	ENSORLG00015005537	si:ch1073-335m2.2	99	78.378	Oryzias_latipes_hsok
ENSGACG00000005341	-	100	65.241	ENSOMEG00000007639	-	100	65.018	Oryzias_melastigma
ENSGACG00000005341	-	97	66.379	ENSOMEG00000004509	si:ch1073-335m2.2	54	66.379	Oryzias_melastigma
ENSGACG00000005341	-	99	46.228	ENSOGAG00000025110	SPEN	96	46.731	Otolemur_garnettii
ENSGACG00000005341	-	99	45.886	ENSOARG00000008477	SPEN	96	45.969	Ovis_aries
ENSGACG00000005341	-	99	46.196	ENSPPAG00000035690	SPEN	96	46.730	Pan_paniscus
ENSGACG00000005341	-	94	48.650	ENSPTRG00000000210	SPEN	96	47.290	Pan_troglodytes
ENSGACG00000005341	-	99	46.497	ENSPANG00000006293	SPEN	97	46.809	Papio_anubis
ENSGACG00000005341	-	97	100.000	ENSPKIG00000010492	si:ch1073-335m2.2	100	56.535	Paramormyrops_kingsleyae
ENSGACG00000005341	-	100	53.216	ENSPKIG00000002617	SPEN	90	80.827	Paramormyrops_kingsleyae
ENSGACG00000005341	-	99	46.607	ENSPSIG00000008026	SPEN	100	46.672	Pelodiscus_sinensis
ENSGACG00000005341	-	89	47.485	ENSPEMG00000022997	Spen	97	45.086	Peromyscus_maniculatus_bairdii
ENSGACG00000005341	-	70	78.075	ENSPFOG00000017986	si:ch1073-335m2.2	72	78.919	Poecilia_formosa
ENSGACG00000005341	-	95	78.075	ENSPLAG00000016625	si:ch1073-335m2.2	99	78.919	Poecilia_latipinna
ENSGACG00000005341	-	70	78.075	ENSPMEG00000002674	si:ch1073-335m2.2	75	78.919	Poecilia_mexicana
ENSGACG00000005341	-	100	71.413	ENSPMEG00000006764	-	90	87.547	Poecilia_mexicana
ENSGACG00000005341	-	100	71.413	ENSPREG00000010399	-	90	87.547	Poecilia_reticulata
ENSGACG00000005341	-	95	78.191	ENSPREG00000005357	si:ch1073-335m2.2	98	78.919	Poecilia_reticulata
ENSGACG00000005341	-	99	46.898	ENSPPYG00000001834	SPEN	97	47.502	Pongo_abelii
ENSGACG00000005341	-	87	65.992	ENSPCAG00000009543	SPEN	87	65.992	Procavia_capensis
ENSGACG00000005341	-	99	45.774	ENSPCOG00000021735	SPEN	96	45.705	Propithecus_coquereli
ENSGACG00000005341	-	73	66.938	ENSPVAG00000013794	SPEN	69	66.802	Pteropus_vampyrus
ENSGACG00000005341	-	52	76.410	ENSPNYG00000009042	si:ch1073-335m2.2	52	76.410	Pundamilia_nyererei
ENSGACG00000005341	-	100	75.322	ENSPNYG00000012379	-	100	75.351	Pundamilia_nyererei
ENSGACG00000005341	-	99	86.441	ENSPNAG00000020795	spen	87	81.955	Pygocentrus_nattereri
ENSGACG00000005341	-	97	78.333	ENSPNAG00000011452	si:ch1073-335m2.2	99	78.333	Pygocentrus_nattereri
ENSGACG00000005341	-	69	57.152	ENSRNOG00000033556	Spen	97	45.744	Rattus_norvegicus
ENSGACG00000005341	-	99	46.616	ENSRBIG00000039654	SPEN	97	46.930	Rhinopithecus_bieti
ENSGACG00000005341	-	99	46.638	ENSRROG00000035686	SPEN	97	46.254	Rhinopithecus_roxellana
ENSGACG00000005341	-	99	46.447	ENSSBOG00000028770	SPEN	96	47.095	Saimiri_boliviensis_boliviensis
ENSGACG00000005341	-	96	48.831	ENSSHAG00000004960	SPEN	99	77.589	Sarcophilus_harrisii
ENSGACG00000005341	-	87	64.815	ENSSFOG00015007131	si:ch1073-335m2.2	100	53.837	Scleropages_formosus
ENSGACG00000005341	-	100	54.231	ENSSFOG00015010267	si:ch1073-335m2.2	100	54.505	Scleropages_formosus
ENSGACG00000005341	-	100	77.687	ENSSMAG00000008996	-	100	77.132	Scophthalmus_maximus
ENSGACG00000005341	-	97	68.445	ENSSDUG00000008416	si:ch1073-335m2.2	99	74.257	Seriola_dumerili
ENSGACG00000005341	-	100	80.180	ENSSDUG00000003476	-	90	92.453	Seriola_dumerili
ENSGACG00000005341	-	96	68.329	ENSSLDG00000023347	si:ch1073-335m2.2	100	64.591	Seriola_lalandi_dorsalis
ENSGACG00000005341	-	100	79.821	ENSSLDG00000012950	-	90	92.453	Seriola_lalandi_dorsalis
ENSGACG00000005341	-	88	43.193	ENSSPUG00000001866	-	100	43.085	Sphenodon_punctatus
ENSGACG00000005341	-	100	79.002	ENSSPAG00000006014	-	90	92.075	Stegastes_partitus
ENSGACG00000005341	-	95	79.570	ENSSPAG00000012454	si:ch1073-335m2.2	98	79.570	Stegastes_partitus
ENSGACG00000005341	-	85	46.679	ENSSSCG00000034484	SPEN	95	46.522	Sus_scrofa
ENSGACG00000005341	-	100	72.158	ENSTRUG00000024350	-	100	72.242	Takifugu_rubripes
ENSGACG00000005341	-	97	90.346	ENSTNIG00000010907	-	100	90.703	Tetraodon_nigroviridis
ENSGACG00000005341	-	100	62.403	ENSTNIG00000014666	si:ch1073-335m2.2	100	62.403	Tetraodon_nigroviridis
ENSGACG00000005341	-	71	80.749	ENSTBEG00000003628	SPEN	67	80.749	Tupaia_belangeri
ENSGACG00000005341	-	80	74.882	ENSTTRG00000015704	SPEN	73	74.882	Tursiops_truncatus
ENSGACG00000005341	-	70	58.384	ENSUAMG00000009600	SPEN	96	47.004	Ursus_americanus
ENSGACG00000005341	-	69	56.665	ENSUMAG00000021641	SPEN	96	45.868	Ursus_maritimus
ENSGACG00000005341	-	92	100.000	ENSVVUG00000028951	SPEN	95	100.000	Vulpes_vulpes
ENSGACG00000005341	-	95	78.191	ENSXCOG00000004516	si:ch1073-335m2.2	98	78.919	Xiphophorus_couchianus
ENSGACG00000005341	-	100	71.056	ENSXMAG00000021384	-	90	85.660	Xiphophorus_maculatus
ENSGACG00000005341	-	70	78.075	ENSXMAG00000029887	si:ch1073-335m2.2	72	78.919	Xiphophorus_maculatus