EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000005397 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-247i17.1
Alias: -
Full Name: si:ch211-247i17.1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 1078 bases
Position: chrgroupXIX:6878614-6879691
Accession: ZDB-GENE-131121-275
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000007127	MMR_HSR1	PF01926.23	9.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000007145	-	525	-	ENSGACP00000007127	175 (aa)	-	G3NP63

Gene Model

Click here to download ENSGACG00000005397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000005397's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000005397	si:ch211-247i17.1	91	37.267	ENSGACG00000020437	-	78	36.875
ENSGACG00000005397	si:ch211-247i17.1	93	35.329	ENSGACG00000018745	rab33a	71	35.329
ENSGACG00000005397	si:ch211-247i17.1	90	34.969	ENSGACG00000014578	RAB9A	80	34.969
ENSGACG00000005397	si:ch211-247i17.1	95	34.884	ENSGACG00000010473	RAB29	82	34.884
ENSGACG00000005397	si:ch211-247i17.1	88	31.613	ENSGACG00000011661	kras	78	31.613
ENSGACG00000005397	si:ch211-247i17.1	94	50.303	ENSGACG00000013611	-	80	50.303
ENSGACG00000005397	si:ch211-247i17.1	95	30.952	ENSGACG00000012474	rabl2	72	30.952
ENSGACG00000005397	si:ch211-247i17.1	95	39.053	ENSGACG00000013401	zgc:171927	80	39.752
ENSGACG00000005397	si:ch211-247i17.1	89	40.123	ENSGACG00000001694	rab18a	76	40.123
ENSGACG00000005397	si:ch211-247i17.1	67	33.871	ENSGACG00000000273	arl8a	62	33.871
ENSGACG00000005397	si:ch211-247i17.1	94	41.212	ENSGACG00000013721	rab6bb	78	41.212
ENSGACG00000005397	si:ch211-247i17.1	81	32.639	ENSGACG00000007818	si:ch73-116o1.2	77	33.974
ENSGACG00000005397	si:ch211-247i17.1	95	45.509	ENSGACG00000019767	-	83	45.509
ENSGACG00000005397	si:ch211-247i17.1	88	38.961	ENSGACG00000013259	rab11al	70	38.961
ENSGACG00000005397	si:ch211-247i17.1	92	37.888	ENSGACG00000019642	-	78	37.888
ENSGACG00000005397	si:ch211-247i17.1	90	38.854	ENSGACG00000013548	rab35b	77	38.854
ENSGACG00000005397	si:ch211-247i17.1	89	37.419	ENSGACG00000016799	-	89	37.419
ENSGACG00000005397	si:ch211-247i17.1	97	33.918	ENSGACG00000011190	rab34a	64	33.918
ENSGACG00000005397	si:ch211-247i17.1	89	37.179	ENSGACG00000016164	rab4a	70	37.179
ENSGACG00000005397	si:ch211-247i17.1	92	34.940	ENSGACG00000000807	-	80	34.940
ENSGACG00000005397	si:ch211-247i17.1	91	38.750	ENSGACG00000008659	rab5c	72	38.750
ENSGACG00000005397	si:ch211-247i17.1	92	38.272	ENSGACG00000018847	-	71	38.272
ENSGACG00000005397	si:ch211-247i17.1	91	38.125	ENSGACG00000004997	rab5aa	73	38.125
ENSGACG00000005397	si:ch211-247i17.1	89	39.130	ENSGACG00000016395	rab18b	77	39.130
ENSGACG00000005397	si:ch211-247i17.1	86	33.766	ENSGACG00000019134	si:cabz01085950.1	73	33.766
ENSGACG00000005397	si:ch211-247i17.1	91	36.250	ENSGACG00000016639	rab12	73	36.250
ENSGACG00000005397	si:ch211-247i17.1	93	35.366	ENSGACG00000014678	rab36	62	35.366
ENSGACG00000005397	si:ch211-247i17.1	83	30.612	ENSGACG00000000729	rhebl1	78	30.612
ENSGACG00000005397	si:ch211-247i17.1	92	34.940	ENSGACG00000009647	RAB7A	79	34.940
ENSGACG00000005397	si:ch211-247i17.1	92	37.267	ENSGACG00000007722	rab15	89	37.333
ENSGACG00000005397	si:ch211-247i17.1	96	39.535	ENSGACG00000019540	rab33ba	77	39.535
ENSGACG00000005397	si:ch211-247i17.1	89	41.935	ENSGACG00000014905	rab2a	71	41.935
ENSGACG00000005397	si:ch211-247i17.1	92	37.037	ENSGACG00000014915	si:dkey-16l2.16	79	36.842
ENSGACG00000005397	si:ch211-247i17.1	92	39.752	ENSGACG00000012006	rab30	80	39.752
ENSGACG00000005397	si:ch211-247i17.1	91	39.752	ENSGACG00000001725	zgc:101559	68	39.752
ENSGACG00000005397	si:ch211-247i17.1	89	39.355	ENSGACG00000004965	rab25a	74	39.355
ENSGACG00000005397	si:ch211-247i17.1	94	39.535	ENSGACG00000003726	rab6ba	79	39.535
ENSGACG00000005397	si:ch211-247i17.1	92	40.994	ENSGACG00000011925	rab13	79	40.994
ENSGACG00000005397	si:ch211-247i17.1	88	30.968	ENSGACG00000011340	hrasb	80	30.968
ENSGACG00000005397	si:ch211-247i17.1	89	32.500	ENSGACG00000015457	dnajc27	73	32.500
ENSGACG00000005397	si:ch211-247i17.1	92	37.888	ENSGACG00000003864	rab1ab	78	37.888
ENSGACG00000005397	si:ch211-247i17.1	83	33.113	ENSGACG00000016680	rheb	78	33.113
ENSGACG00000005397	si:ch211-247i17.1	98	34.104	ENSGACG00000020514	rab34b	67	34.104
ENSGACG00000005397	si:ch211-247i17.1	91	30.864	ENSGACG00000012267	arl8ba	84	30.864
ENSGACG00000005397	si:ch211-247i17.1	91	30.864	ENSGACG00000011972	arl8bb	84	30.864
ENSGACG00000005397	si:ch211-247i17.1	94	42.424	ENSGACG00000020356	rab6a	78	42.424
ENSGACG00000005397	si:ch211-247i17.1	87	35.625	ENSGACG00000003972	rab9a	76	35.625
ENSGACG00000005397	si:ch211-247i17.1	89	38.065	ENSGACG00000013297	-	70	38.065
ENSGACG00000005397	si:ch211-247i17.1	96	34.682	ENSGACG00000011607	rab32b	77	34.682
ENSGACG00000005397	si:ch211-247i17.1	92	37.267	ENSGACG00000000789	rab1ba	78	37.267
ENSGACG00000005397	si:ch211-247i17.1	85	37.838	ENSGACG00000006151	rab23	67	38.750
ENSGACG00000005397	si:ch211-247i17.1	91	35.802	ENSGACG00000001950	RAB39B	74	35.802
ENSGACG00000005397	si:ch211-247i17.1	88	39.610	ENSGACG00000013249	rab25b	72	39.610
ENSGACG00000005397	si:ch211-247i17.1	89	40.000	ENSGACG00000015479	rab11bb	70	40.000
ENSGACG00000005397	si:ch211-247i17.1	91	30.247	ENSGACG00000004844	rras	84	30.247
ENSGACG00000005397	si:ch211-247i17.1	94	41.212	ENSGACG00000017153	rab41	77	41.212
ENSGACG00000005397	si:ch211-247i17.1	91	37.500	ENSGACG00000006162	-	72	37.500
ENSGACG00000005397	si:ch211-247i17.1	87	37.267	ENSGACG00000018291	rab9b	76	37.267
ENSGACG00000005397	si:ch211-247i17.1	90	33.544	ENSGACG00000005608	rab22a	80	33.544
ENSGACG00000005397	si:ch211-247i17.1	89	40.645	ENSGACG00000005979	RAB15	74	40.645

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000005397	si:ch211-247i17.1	98	42.529	WBGene00007067	4R79.2	56	42.529	Caenorhabditis_elegans
ENSGACG00000005397	si:ch211-247i17.1	83	48.966	ENSEBUG00000001416	-	51	48.966	Eptatretus_burgeri
ENSGACG00000005397	si:ch211-247i17.1	97	66.471	ENSGMOG00000017644	si:ch211-247i17.1	97	66.471	Gadus_morhua
ENSGACG00000005397	si:ch211-247i17.1	94	58.182	ENSMGAG00000009012	-	96	58.182	Meleagris_gallopavo
ENSGACG00000005397	si:ch211-247i17.1	94	55.758	ENSPSIG00000012698	-	96	55.758	Pelodiscus_sinensis
ENSGACG00000005397	si:ch211-247i17.1	94	58.182	ENSTGUG00000009776	-	95	58.182	Taeniopygia_guttata
ENSGACG00000005397	si:ch211-247i17.1	94	68.072	ENSTNIG00000001043	si:ch211-247i17.1	81	68.072	Tetraodon_nigroviridis
ENSGACG00000005397	si:ch211-247i17.1	61	72.477	ENSXMAG00000003735	si:ch211-247i17.1	92	72.477	Xiphophorus_maculatus