EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGACG00000005528 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Gasterosteus_aculeatus
Status
putative
Strand
Minus strand
Length
2631 bases
Position
chrgroupXXI:11494158-11496788
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGACP00000007320LSMPF01423.223.9e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGACT00000007338-276-ENSGACP0000000732091 (aa)-G3NPQ5
Gene Model
Click here to download ENSGACG00000005528's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000005528's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGACG00000005528lsm59235.714ENSGACG00000003488lsm38135.714
ENSGACG00000005528lsm57632.877ENSGACG00000010920snrpe7732.877
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGACG00000005528lsm510095.604ENSG00000106355LSM510096.774Homo_sapiens
ENSGACG00000005528lsm510098.901ENSAPOG00000020779LSM510098.901Acanthochromis_polyacanthus
ENSGACG00000005528lsm59097.561ENSAPOG00000011743LSM5100100.000Acanthochromis_polyacanthus
ENSGACG00000005528lsm510095.604ENSAMEG00000006700LSM510095.604Ailuropoda_melanoleuca
ENSGACG00000005528lsm59560.465ENSACIG00000019185lsm59660.465Amphilophus_citrinellus
ENSGACG00000005528lsm510098.901ENSAOCG00000001636lsm510098.901Amphiprion_ocellaris
ENSGACG00000005528lsm568100.000ENSAPEG00000008201lsm5100100.000Amphiprion_percula
ENSGACG00000005528lsm510098.901ENSAPEG00000008151lsm510098.901Amphiprion_percula
ENSGACG00000005528lsm59097.561ENSATEG00000020470lsm510062.637Anabas_testudineus
ENSGACG00000005528lsm58197.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSGACG00000005528lsm56294.643ENSACAG00000009530LSM59394.643Anolis_carolinensis
ENSGACG00000005528lsm510094.505ENSANAG00000034409-10094.505Aotus_nancymaae
ENSGACG00000005528lsm59991.111ENSANAG00000024192-9491.111Aotus_nancymaae
ENSGACG00000005528lsm510074.725ENSANAG00000037758-10074.725Aotus_nancymaae
ENSGACG00000005528lsm59598.837ENSACLG00000012891lsm59898.837Astatotilapia_calliptera
ENSGACG00000005528lsm510082.979ENSAMXG00000035543lsm510082.979Astyanax_mexicanus
ENSGACG00000005528lsm510095.604ENSBTAG00000002332LSM510095.604Bos_taurus
ENSGACG00000005528lsm55377.083ENSBTAG00000052014-6377.083Bos_taurus
ENSGACG00000005528lsm510072.527WBGene00003079lsm-510072.527Caenorhabditis_elegans
ENSGACG00000005528lsm59983.333ENSCJAG00000005678-10083.333Callithrix_jacchus
ENSGACG00000005528lsm510095.604ENSCJAG00000047379LSM58186.538Callithrix_jacchus
ENSGACG00000005528lsm510094.505ENSCAFG00000019261-10094.505Canis_familiaris
ENSGACG00000005528lsm55588.000ENSCAFG00000030781-5888.000Canis_familiaris
ENSGACG00000005528lsm510095.604ENSCAFG00020004946LSM510095.604Canis_lupus_dingo
ENSGACG00000005528lsm510095.604ENSCHIG00000024539LSM510095.604Capra_hircus
ENSGACG00000005528lsm58174.324ENSCHIG00000021428-9571.591Capra_hircus
ENSGACG00000005528lsm510093.407ENSCHIG00000004079-10093.407Capra_hircus
ENSGACG00000005528lsm510083.516ENSTSYG00000028728-10083.516Carlito_syrichta
ENSGACG00000005528lsm510095.604ENSTSYG00000006449-10095.604Carlito_syrichta
ENSGACG00000005528lsm510078.022ENSTSYG00000026530-9178.022Carlito_syrichta
ENSGACG00000005528lsm510070.330ENSTSYG00000036637-10070.330Carlito_syrichta
ENSGACG00000005528lsm58290.667ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSGACG00000005528lsm510095.604ENSCPOG00000036386LSM510095.604Cavia_porcellus
ENSGACG00000005528lsm510076.923ENSCCAG00000032792-10076.923Cebus_capucinus
ENSGACG00000005528lsm510093.407ENSCCAG00000032123-10093.407Cebus_capucinus
ENSGACG00000005528lsm510064.835ENSCCAG00000037334-10064.835Cebus_capucinus
ENSGACG00000005528lsm510095.604ENSCCAG00000037808-10095.604Cebus_capucinus
ENSGACG00000005528lsm510094.505ENSCCAG00000000821-10094.505Cebus_capucinus
ENSGACG00000005528lsm510095.604ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSGACG00000005528lsm59984.444ENSCATG00000014790-9592.727Cercocebus_atys
ENSGACG00000005528lsm510095.604ENSCLAG00000000202LSM510095.604Chinchilla_lanigera
ENSGACG00000005528lsm510081.319ENSCLAG00000005062-9081.319Chinchilla_lanigera
ENSGACG00000005528lsm58296.000ENSCHOG00000005335LSM59996.000Choloepus_hoffmanni
ENSGACG00000005528lsm510095.604ENSCPBG00000013685LSM510095.604Chrysemys_picta_bellii
ENSGACG00000005528lsm59586.047ENSCING00000020625-9786.047Ciona_intestinalis
ENSGACG00000005528lsm59586.047ENSCSAVG00000001439-9886.047Ciona_savignyi
ENSGACG00000005528lsm510095.604ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSGACG00000005528lsm510095.604ENSCGRG00001015461Lsm510095.604Cricetulus_griseus_chok1gshd
ENSGACG00000005528lsm58297.333ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSGACG00000005528lsm510061.538ENSCSEG00000015286lsm510061.538Cynoglossus_semilaevis
ENSGACG00000005528lsm510098.901ENSCVAG00000004262lsm510098.901Cyprinodon_variegatus
ENSGACG00000005528lsm510095.604ENSDARG00000071573lsm510098.387Danio_rerio
ENSGACG00000005528lsm59685.057ENSDNOG00000049495-9685.057Dasypus_novemcinctus
ENSGACG00000005528lsm510095.604ENSDNOG00000034958LSM510095.604Dasypus_novemcinctus
ENSGACG00000005528lsm510095.604ENSDORG00000009422Lsm510095.604Dipodomys_ordii
ENSGACG00000005528lsm59879.775FBgn0035675CG66109879.775Drosophila_melanogaster
ENSGACG00000005528lsm58178.378ENSETEG00000016074-9878.378Echinops_telfairi
ENSGACG00000005528lsm59864.045ENSETEG00000000777-9964.045Echinops_telfairi
ENSGACG00000005528lsm510095.604ENSETEG00000018068LSM510095.604Echinops_telfairi
ENSGACG00000005528lsm59972.222ENSETEG00000001469-9972.222Echinops_telfairi
ENSGACG00000005528lsm59875.281ENSETEG00000010651-9975.281Echinops_telfairi
ENSGACG00000005528lsm510094.505ENSEBUG00000008540lsm510094.505Eptatretus_burgeri
ENSGACG00000005528lsm510095.604ENSEASG00005003500LSM510095.604Equus_asinus_asinus
ENSGACG00000005528lsm510081.319ENSECAG00000018445LSM510081.319Equus_caballus
ENSGACG00000005528lsm56392.982ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSGACG00000005528lsm510097.802ENSELUG00000007792lsm510097.802Esox_lucius
ENSGACG00000005528lsm510095.604ENSFCAG00000000230LSM510095.604Felis_catus
ENSGACG00000005528lsm58497.368ENSFALG00000001892LSM59297.368Ficedula_albicollis
ENSGACG00000005528lsm510095.604ENSFDAG00000008767LSM510095.604Fukomys_damarensis
ENSGACG00000005528lsm59067.073ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSGACG00000005528lsm59877.528ENSFHEG00000004011lsm59677.528Fundulus_heteroclitus
ENSGACG00000005528lsm59998.889ENSGMOG00000018235lsm510098.889Gadus_morhua
ENSGACG00000005528lsm510094.505ENSGALG00000041625LSM510094.505Gallus_gallus
ENSGACG00000005528lsm568100.000ENSGAFG00000016824lsm5100100.000Gambusia_affinis
ENSGACG00000005528lsm510095.604ENSGAGG00000015593LSM510095.604Gopherus_agassizii
ENSGACG00000005528lsm510095.604ENSGGOG00000043469LSM510095.604Gorilla_gorilla
ENSGACG00000005528lsm59598.837ENSHBUG00000013773lsm59898.837Haplochromis_burtoni
ENSGACG00000005528lsm510095.604ENSHGLG00000011765LSM510095.604Heterocephalus_glaber_female
ENSGACG00000005528lsm510092.308ENSHGLG00100015610LSM510092.308Heterocephalus_glaber_male
ENSGACG00000005528lsm510059.341ENSHCOG00000008288lsm510059.341Hippocampus_comes
ENSGACG00000005528lsm510096.703ENSIPUG00000021095LSM510096.703Ictalurus_punctatus
ENSGACG00000005528lsm510095.604ENSSTOG00000012662LSM510095.604Ictidomys_tridecemlineatus
ENSGACG00000005528lsm59280.233ENSSTOG00000033886-9780.233Ictidomys_tridecemlineatus
ENSGACG00000005528lsm510093.407ENSJJAG00000012145-10093.407Jaculus_jaculus
ENSGACG00000005528lsm510067.033ENSJJAG00000016144-9267.033Jaculus_jaculus
ENSGACG00000005528lsm58788.608ENSJJAG00000004475-10088.608Jaculus_jaculus
ENSGACG00000005528lsm510097.802ENSKMAG00000021861lsm510097.802Kryptolebias_marmoratus
ENSGACG00000005528lsm56285.714ENSLBEG00000017379lsm59285.714Labrus_bergylta
ENSGACG00000005528lsm59097.561ENSLBEG00000009235LSM56597.561Labrus_bergylta
ENSGACG00000005528lsm510094.505ENSLACG00000022448LSM510094.505Latimeria_chalumnae
ENSGACG00000005528lsm510096.703ENSLOCG00000012903lsm510096.703Lepisosteus_oculatus
ENSGACG00000005528lsm510095.604ENSLAFG00000029579LSM510095.604Loxodonta_africana
ENSGACG00000005528lsm510069.231ENSLAFG00000027938-10069.231Loxodonta_africana
ENSGACG00000005528lsm55391.667ENSMFAG00000031187-8191.667Macaca_fascicularis
ENSGACG00000005528lsm510095.604ENSMFAG00000038508LSM510095.604Macaca_fascicularis
ENSGACG00000005528lsm510093.407ENSMFAG00000030152-10093.407Macaca_fascicularis
ENSGACG00000005528lsm55786.538ENSMMUG00000045129-8186.538Macaca_mulatta
ENSGACG00000005528lsm59985.556ENSMMUG00000039822-10085.556Macaca_mulatta
ENSGACG00000005528lsm510093.407ENSMMUG00000030131-10093.407Macaca_mulatta
ENSGACG00000005528lsm510095.604ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSGACG00000005528lsm510093.407ENSMNEG00000037935-10093.407Macaca_nemestrina
ENSGACG00000005528lsm510095.604ENSMLEG00000024945LSM510095.604Mandrillus_leucophaeus
ENSGACG00000005528lsm59884.270ENSMLEG00000034037-10084.270Mandrillus_leucophaeus
ENSGACG00000005528lsm510092.308ENSMAMG00000012869lsm510092.308Mastacembelus_armatus
ENSGACG00000005528lsm59598.837ENSMZEG00005019554lsm59898.837Maylandia_zebra
ENSGACG00000005528lsm510094.505ENSMGAG00000012117LSM510094.505Meleagris_gallopavo
ENSGACG00000005528lsm510095.604ENSMAUG00000012222Lsm510095.604Mesocricetus_auratus
ENSGACG00000005528lsm510094.505ENSMAUG00000008132-10094.505Mesocricetus_auratus
ENSGACG00000005528lsm510095.604ENSMICG00000005353LSM510095.604Microcebus_murinus
ENSGACG00000005528lsm59974.444ENSMICG00000033928-9674.444Microcebus_murinus
ENSGACG00000005528lsm510095.604ENSMOCG00000012018Lsm510095.604Microtus_ochrogaster
ENSGACG00000005528lsm584100.000ENSMMOG00000004026lsm587100.000Mola_mola
ENSGACG00000005528lsm56896.774ENSMODG00000013274-10096.774Monodelphis_domestica
ENSGACG00000005528lsm56893.548ENSMALG00000010343lsm510093.548Monopterus_albus
ENSGACG00000005528lsm510095.604MGP_CAROLIEiJ_G0028421Lsm510095.604Mus_caroli
ENSGACG00000005528lsm510095.604ENSMUSG00000091625Lsm510095.604Mus_musculus
ENSGACG00000005528lsm510095.604MGP_PahariEiJ_G0022171Lsm510095.604Mus_pahari
ENSGACG00000005528lsm510095.604MGP_SPRETEiJ_G0029423Lsm510095.604Mus_spretus
ENSGACG00000005528lsm510095.604ENSMLUG00000017028LSM510095.604Myotis_lucifugus
ENSGACG00000005528lsm510083.871ENSNGAG00000017707-10083.871Nannospalax_galili
ENSGACG00000005528lsm510095.604ENSNGAG00000024142Lsm510095.604Nannospalax_galili
ENSGACG00000005528lsm59975.556ENSNGAG00000022569-9675.556Nannospalax_galili
ENSGACG00000005528lsm56398.246ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSGACG00000005528lsm510095.604ENSNLEG00000015268LSM510095.604Nomascus_leucogenys
ENSGACG00000005528lsm58297.333ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSGACG00000005528lsm510095.604ENSODEG00000019072-10095.604Octodon_degus
ENSGACG00000005528lsm510095.604ENSODEG00000008258-10095.604Octodon_degus
ENSGACG00000005528lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSGACG00000005528lsm510095.604ENSOCUG00000029043LSM510095.604Oryctolagus_cuniculus
ENSGACG00000005528lsm510096.703ENSORLG00000027725lsm55896.703Oryzias_latipes
ENSGACG00000005528lsm59693.103ENSORLG00020003019lsm58693.103Oryzias_latipes_hni
ENSGACG00000005528lsm510096.703ENSORLG00015003338lsm510096.703Oryzias_latipes_hsok
ENSGACG00000005528lsm510095.604ENSOMEG00000001078lsm510095.604Oryzias_melastigma
ENSGACG00000005528lsm510095.604ENSOGAG00000013892LSM510095.604Otolemur_garnettii
ENSGACG00000005528lsm510095.604ENSOARG00000006944LSM510095.604Ovis_aries
ENSGACG00000005528lsm510095.604ENSPPAG00000003697-10095.604Pan_paniscus
ENSGACG00000005528lsm510095.604ENSPPRG00000002550LSM510095.604Panthera_pardus
ENSGACG00000005528lsm510095.604ENSPTIG00000015604LSM510095.604Panthera_tigris_altaica
ENSGACG00000005528lsm510079.121ENSPTRG00000049488-10081.319Pan_troglodytes
ENSGACG00000005528lsm510095.604ENSPTRG00000019057LSM510095.604Pan_troglodytes
ENSGACG00000005528lsm59985.556ENSPANG00000032538-10085.556Papio_anubis
ENSGACG00000005528lsm510092.308ENSPANG00000033477-10092.308Papio_anubis
ENSGACG00000005528lsm510095.604ENSPANG00000032179-10095.604Papio_anubis
ENSGACG00000005528lsm510096.703ENSPKIG00000011910lsm510096.703Paramormyrops_kingsleyae
ENSGACG00000005528lsm58197.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSGACG00000005528lsm568100.000ENSPMGG00000011699lsm5100100.000Periophthalmus_magnuspinnatus
ENSGACG00000005528lsm510068.132ENSPEMG00000022375-10068.132Peromyscus_maniculatus_bairdii
ENSGACG00000005528lsm55293.617ENSPEMG00000019994-8093.617Peromyscus_maniculatus_bairdii
ENSGACG00000005528lsm510098.901ENSPFOG00000001433lsm510098.901Poecilia_formosa
ENSGACG00000005528lsm510098.901ENSPLAG00000009665lsm510098.901Poecilia_latipinna
ENSGACG00000005528lsm510098.901ENSPMEG00000022265lsm510098.901Poecilia_mexicana
ENSGACG00000005528lsm568100.000ENSPREG00000022452lsm5100100.000Poecilia_reticulata
ENSGACG00000005528lsm510092.308ENSPPYG00000017661LSM510092.308Pongo_abelii
ENSGACG00000005528lsm58996.296ENSPCAG00000013740LSM510096.296Procavia_capensis
ENSGACG00000005528lsm510095.604ENSPVAG00000009786LSM510095.604Pteropus_vampyrus
ENSGACG00000005528lsm59598.837ENSPNYG00000022236lsm59898.837Pundamilia_nyererei
ENSGACG00000005528lsm510096.703ENSPNAG00000001887lsm510096.703Pygocentrus_nattereri
ENSGACG00000005528lsm510095.604ENSRNOG00000042126Lsm510095.604Rattus_norvegicus
ENSGACG00000005528lsm510092.391ENSRNOG00000027305AABR07065089.110092.391Rattus_norvegicus
ENSGACG00000005528lsm510095.604ENSRBIG00000030714-10095.604Rhinopithecus_bieti
ENSGACG00000005528lsm510095.604ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSGACG00000005528lsm510095.604ENSRBIG00000030340-10095.604Rhinopithecus_bieti
ENSGACG00000005528lsm510094.505ENSRBIG00000024431-10094.505Rhinopithecus_bieti
ENSGACG00000005528lsm510095.604ENSRROG00000023884-10095.604Rhinopithecus_roxellana
ENSGACG00000005528lsm510095.604ENSRROG00000004655-10095.604Rhinopithecus_roxellana
ENSGACG00000005528lsm510095.604ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSGACG00000005528lsm58548.780YER146W-8848.780Saccharomyces_cerevisiae
ENSGACG00000005528lsm510073.626ENSSBOG00000034794-10073.626Saimiri_boliviensis_boliviensis
ENSGACG00000005528lsm510095.604ENSSBOG00000012312LSM510095.604Saimiri_boliviensis_boliviensis
ENSGACG00000005528lsm510093.407ENSSBOG00000019124-10093.407Saimiri_boliviensis_boliviensis
ENSGACG00000005528lsm510096.703ENSSFOG00015010099lsm510096.703Scleropages_formosus
ENSGACG00000005528lsm510063.736ENSSMAG00000007895lsm510063.736Scophthalmus_maximus
ENSGACG00000005528lsm568100.000ENSSDUG00000010762lsm5100100.000Seriola_dumerili
ENSGACG00000005528lsm58676.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSGACG00000005528lsm510097.802ENSSLDG00000025242lsm510097.802Seriola_lalandi_dorsalis
ENSGACG00000005528lsm510067.033ENSSARG00000003330LSM510067.033Sorex_araneus
ENSGACG00000005528lsm510093.407ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSGACG00000005528lsm510062.637ENSSPAG00000005435lsm510062.637Stegastes_partitus
ENSGACG00000005528lsm57684.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSGACG00000005528lsm510095.604ENSSSCG00000026064-10095.604Sus_scrofa
ENSGACG00000005528lsm510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSGACG00000005528lsm59087.356ENSTRUG00000017749lsm56587.356Takifugu_rubripes
ENSGACG00000005528lsm510095.604ENSTNIG00000008695lsm510095.604Tetraodon_nigroviridis
ENSGACG00000005528lsm510095.604ENSTBEG00000004876LSM510095.604Tupaia_belangeri
ENSGACG00000005528lsm510095.604ENSTTRG00000004237LSM510095.604Tursiops_truncatus
ENSGACG00000005528lsm55786.538ENSUAMG00000009786LSM56886.538Ursus_americanus
ENSGACG00000005528lsm510094.505ENSUMAG00000002625LSM56594.505Ursus_maritimus
ENSGACG00000005528lsm510095.604ENSVPAG00000009985LSM510095.604Vicugna_pacos
ENSGACG00000005528lsm510095.604ENSVVUG00000021311LSM510095.604Vulpes_vulpes
ENSGACG00000005528lsm59095.122ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSGACG00000005528lsm568100.000ENSXCOG00000015348lsm5100100.000Xiphophorus_couchianus
ENSGACG00000005528lsm510098.901ENSXMAG00000029988lsm510098.901Xiphophorus_maculatus

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