EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000005552 (Gene tree)
Gene ID: -
Gene Symbol: zgc:63587
Alias: -
Full Name: zgc:63587
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 18270 bases
Position: chrgroupXIII:3914596-3932865
Accession: ZDB-GENE-040426-1175
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000007354	MMR_HSR1	PF01926.23	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000007372	-	1126	-	ENSGACP00000007354	348 (aa)	-	G3NPT9

Gene Model

Click here to download ENSGACG00000005552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000005552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000005552	zgc:63587	99	59.884	ENSGACG00000020488	sept4a	94	61.027
ENSGACG00000005552	zgc:63587	86	47.000	ENSGACG00000000503	sept12	87	46.980
ENSGACG00000005552	zgc:63587	99	84.659	ENSGACG00000015721	sept2	95	84.983
ENSGACG00000005552	zgc:63587	96	55.814	ENSGACG00000002265	sept15	66	61.168
ENSGACG00000005552	zgc:63587	91	43.413	ENSGACG00000018181	sept8b	68	45.608
ENSGACG00000005552	zgc:63587	94	61.080	ENSGACG00000008792	SEPT4	61	68.027
ENSGACG00000005552	zgc:63587	94	59.593	ENSGACG00000005538	sept5a	92	67.816
ENSGACG00000005552	zgc:63587	95	39.884	ENSGACG00000017441	sept6	69	41.801
ENSGACG00000005552	zgc:63587	100	40.984	ENSGACG00000020737	sept8a	65	43.226
ENSGACG00000005552	zgc:63587	84	47.315	ENSGACG00000015988	sept3	89	46.644
ENSGACG00000005552	zgc:63587	96	55.977	ENSGACG00000008060	SEPT7	66	61.724
ENSGACG00000005552	zgc:63587	86	47.855	ENSGACG00000012304	sept9a	88	47.855
ENSGACG00000005552	zgc:63587	95	56.061	ENSGACG00000012939	sept7b	70	60.690
ENSGACG00000005552	zgc:63587	87	47.368	ENSGACG00000019397	sept9b	83	47.368

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000005552	zgc:63587	100	97.414	ENSAPOG00000021616	zgc:63587	100	97.414	Acanthochromis_polyacanthus
ENSGACG00000005552	zgc:63587	89	97.411	ENSACIG00000006540	zgc:63587	100	97.411	Amphilophus_citrinellus
ENSGACG00000005552	zgc:63587	100	96.552	ENSAOCG00000015026	zgc:63587	100	96.552	Amphiprion_ocellaris
ENSGACG00000005552	zgc:63587	100	96.552	ENSAPEG00000017625	zgc:63587	100	96.552	Amphiprion_percula
ENSGACG00000005552	zgc:63587	100	96.552	ENSATEG00000020519	zgc:63587	100	96.552	Anabas_testudineus
ENSGACG00000005552	zgc:63587	99	92.754	ENSACAG00000000754	-	99	92.754	Anolis_carolinensis
ENSGACG00000005552	zgc:63587	100	97.126	ENSACLG00000011287	zgc:63587	100	97.126	Astatotilapia_calliptera
ENSGACG00000005552	zgc:63587	99	96.232	ENSAMXG00000006164	zgc:63587	95	96.232	Astyanax_mexicanus
ENSGACG00000005552	zgc:63587	99	93.913	ENSCPBG00000010648	-	99	93.913	Chrysemys_picta_bellii
ENSGACG00000005552	zgc:63587	100	96.552	ENSCSEG00000019626	zgc:63587	100	96.552	Cynoglossus_semilaevis
ENSGACG00000005552	zgc:63587	100	96.839	ENSCVAG00000017959	zgc:63587	100	96.839	Cyprinodon_variegatus
ENSGACG00000005552	zgc:63587	68	93.277	ENSDARG00000017140	zgc:63587	86	93.277	Danio_rerio
ENSGACG00000005552	zgc:63587	100	96.264	ENSELUG00000009060	zgc:63587	100	96.264	Esox_lucius
ENSGACG00000005552	zgc:63587	99	93.913	ENSFALG00000008010	-	99	93.913	Ficedula_albicollis
ENSGACG00000005552	zgc:63587	100	95.977	ENSFHEG00000018583	zgc:63587	100	95.977	Fundulus_heteroclitus
ENSGACG00000005552	zgc:63587	100	95.977	ENSGMOG00000013563	zgc:63587	100	95.977	Gadus_morhua
ENSGACG00000005552	zgc:63587	99	93.913	ENSGALG00000001652	SEPT2L	99	93.913	Gallus_gallus
ENSGACG00000005552	zgc:63587	100	96.264	ENSGAFG00000000805	zgc:63587	100	96.264	Gambusia_affinis
ENSGACG00000005552	zgc:63587	99	93.913	ENSGAGG00000014380	-	99	93.913	Gopherus_agassizii
ENSGACG00000005552	zgc:63587	100	97.126	ENSHBUG00000013996	zgc:63587	100	97.126	Haplochromis_burtoni
ENSGACG00000005552	zgc:63587	100	97.414	ENSHCOG00000005893	zgc:63587	100	97.414	Hippocampus_comes
ENSGACG00000005552	zgc:63587	100	95.402	ENSKMAG00000003351	zgc:63587	100	95.402	Kryptolebias_marmoratus
ENSGACG00000005552	zgc:63587	100	97.126	ENSLBEG00000025452	zgc:63587	100	97.126	Labrus_bergylta
ENSGACG00000005552	zgc:63587	99	88.116	ENSLACG00000015335	zgc:63587	99	88.116	Latimeria_chalumnae
ENSGACG00000005552	zgc:63587	99	95.942	ENSLOCG00000001793	zgc:63587	95	96.667	Lepisosteus_oculatus
ENSGACG00000005552	zgc:63587	100	97.126	ENSMAMG00000014467	zgc:63587	100	97.126	Mastacembelus_armatus
ENSGACG00000005552	zgc:63587	100	97.126	ENSMZEG00005009713	zgc:63587	100	97.126	Maylandia_zebra
ENSGACG00000005552	zgc:63587	99	80.870	ENSMGAG00000001294	-	99	80.870	Meleagris_gallopavo
ENSGACG00000005552	zgc:63587	92	96.875	ENSMMOG00000011692	zgc:63587	91	96.875	Mola_mola
ENSGACG00000005552	zgc:63587	99	90.751	ENSMODG00000010193	-	94	90.751	Monodelphis_domestica
ENSGACG00000005552	zgc:63587	89	97.735	ENSMALG00000020157	zgc:63587	100	97.735	Monopterus_albus
ENSGACG00000005552	zgc:63587	100	97.126	ENSNBRG00000018582	-	100	97.126	Neolamprologus_brichardi
ENSGACG00000005552	zgc:63587	100	97.126	ENSONIG00000014408	zgc:63587	100	97.126	Oreochromis_niloticus
ENSGACG00000005552	zgc:63587	100	96.264	ENSORLG00000002669	zgc:63587	100	96.264	Oryzias_latipes
ENSGACG00000005552	zgc:63587	100	96.264	ENSORLG00020005356	zgc:63587	100	96.264	Oryzias_latipes_hni
ENSGACG00000005552	zgc:63587	100	96.264	ENSORLG00015015159	zgc:63587	100	96.264	Oryzias_latipes_hsok
ENSGACG00000005552	zgc:63587	100	96.264	ENSOMEG00000017925	zgc:63587	100	96.264	Oryzias_melastigma
ENSGACG00000005552	zgc:63587	99	95.942	ENSPKIG00000024604	zgc:63587	99	95.942	Paramormyrops_kingsleyae
ENSGACG00000005552	zgc:63587	99	93.043	ENSPSIG00000002946	-	99	93.043	Pelodiscus_sinensis
ENSGACG00000005552	zgc:63587	90	94.231	ENSPMGG00000018374	zgc:63587	100	94.231	Periophthalmus_magnuspinnatus
ENSGACG00000005552	zgc:63587	100	91.667	ENSPCIG00000025491	-	99	91.667	Phascolarctos_cinereus
ENSGACG00000005552	zgc:63587	100	96.552	ENSPFOG00000011730	zgc:63587	100	96.552	Poecilia_formosa
ENSGACG00000005552	zgc:63587	100	96.552	ENSPLAG00000018604	zgc:63587	100	96.552	Poecilia_latipinna
ENSGACG00000005552	zgc:63587	100	96.264	ENSPMEG00000004117	zgc:63587	100	96.264	Poecilia_mexicana
ENSGACG00000005552	zgc:63587	100	96.264	ENSPREG00000011612	zgc:63587	100	96.264	Poecilia_reticulata
ENSGACG00000005552	zgc:63587	100	96.839	ENSPNYG00000008409	zgc:63587	100	96.839	Pundamilia_nyererei
ENSGACG00000005552	zgc:63587	99	95.072	ENSPNAG00000000463	zgc:63587	86	95.000	Pygocentrus_nattereri
ENSGACG00000005552	zgc:63587	99	91.304	ENSSHAG00000011013	-	99	91.304	Sarcophilus_harrisii
ENSGACG00000005552	zgc:63587	99	96.232	ENSSFOG00015014108	zgc:63587	99	96.232	Scleropages_formosus
ENSGACG00000005552	zgc:63587	100	97.126	ENSSMAG00000006113	-	100	97.126	Scophthalmus_maximus
ENSGACG00000005552	zgc:63587	98	96.765	ENSSDUG00000002763	zgc:63587	95	96.765	Seriola_dumerili
ENSGACG00000005552	zgc:63587	100	97.126	ENSSLDG00000004826	zgc:63587	100	97.126	Seriola_lalandi_dorsalis
ENSGACG00000005552	zgc:63587	99	93.043	ENSSPUG00000015358	-	99	93.043	Sphenodon_punctatus
ENSGACG00000005552	zgc:63587	100	96.839	ENSSPAG00000015654	-	100	96.839	Stegastes_partitus
ENSGACG00000005552	zgc:63587	57	97.475	ENSSPAG00000000807	zgc:63587	63	97.475	Stegastes_partitus
ENSGACG00000005552	zgc:63587	99	93.043	ENSTGUG00000008445	-	99	93.043	Taeniopygia_guttata
ENSGACG00000005552	zgc:63587	100	97.126	ENSTRUG00000016492	zgc:63587	100	97.126	Takifugu_rubripes
ENSGACG00000005552	zgc:63587	100	96.264	ENSTNIG00000015927	zgc:63587	100	96.264	Tetraodon_nigroviridis
ENSGACG00000005552	zgc:63587	99	93.623	ENSXETG00000018605	sept2-a	99	93.623	Xenopus_tropicalis
ENSGACG00000005552	zgc:63587	95	96.049	ENSXCOG00000002678	zgc:63587	98	96.049	Xiphophorus_couchianus
ENSGACG00000005552	zgc:63587	100	96.264	ENSXMAG00000014718	zgc:63587	100	96.264	Xiphophorus_maculatus