EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000005717 (Gene tree)
Gene ID: -
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA-binding family member 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 16002 bases
Position: chrgroupX:8148308-8164309
Accession: ZDB-GENE-030131-2074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000007561	PUF	PF00806.19	3.9e-69	1	8
ENSGACP00000007561	PUF	PF00806.19	3.9e-69	2	8
ENSGACP00000007561	PUF	PF00806.19	3.9e-69	3	8
ENSGACP00000007561	PUF	PF00806.19	3.9e-69	4	8
ENSGACP00000007561	PUF	PF00806.19	3.9e-69	5	8
ENSGACP00000007561	PUF	PF00806.19	3.9e-69	6	8
ENSGACP00000007561	PUF	PF00806.19	3.9e-69	7	8
ENSGACP00000007561	PUF	PF00806.19	3.9e-69	8	8
ENSGACP00000007558	PUF	PF00806.19	4.6e-69	1	8
ENSGACP00000007558	PUF	PF00806.19	4.6e-69	2	8
ENSGACP00000007558	PUF	PF00806.19	4.6e-69	3	8
ENSGACP00000007558	PUF	PF00806.19	4.6e-69	4	8
ENSGACP00000007558	PUF	PF00806.19	4.6e-69	5	8
ENSGACP00000007558	PUF	PF00806.19	4.6e-69	6	8
ENSGACP00000007558	PUF	PF00806.19	4.6e-69	7	8
ENSGACP00000007558	PUF	PF00806.19	4.6e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000007577	-	3543	-	ENSGACP00000007558	1180 (aa)	-	G3NQE2
ENSGACT00000007580	-	3477	-	ENSGACP00000007561	1158 (aa)	-	G3NQE5

Gene Model

Click here to download ENSGACG00000005717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000005717's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000005717	pum1	92	64.004	ENSGACG00000009670	pum2	100	62.580

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000005717	pum1	94	90.843	ENSG00000134644	PUM1	100	81.034	Homo_sapiens
ENSGACG00000005717	pum1	100	97.155	ENSAPOG00000021632	pum1	100	98.795	Acanthochromis_polyacanthus
ENSGACG00000005717	pum1	100	76.296	ENSAMEG00000017656	PUM1	97	74.773	Ailuropoda_melanoleuca
ENSGACG00000005717	pum1	100	96.121	ENSACIG00000021013	pum1	99	96.121	Amphilophus_citrinellus
ENSGACG00000005717	pum1	100	97.155	ENSAOCG00000003944	pum1	100	98.795	Amphiprion_ocellaris
ENSGACG00000005717	pum1	100	97.155	ENSAPEG00000014550	pum1	100	98.795	Amphiprion_percula
ENSGACG00000005717	pum1	100	96.983	ENSATEG00000016004	pum1	99	96.983	Anabas_testudineus
ENSGACG00000005717	pum1	100	76.936	ENSAPLG00000009351	PUM1	100	75.227	Anas_platyrhynchos
ENSGACG00000005717	pum1	100	76.485	ENSACAG00000000682	PUM1	98	76.383	Anolis_carolinensis
ENSGACG00000005717	pum1	100	76.359	ENSANAG00000027865	PUM1	100	80.911	Aotus_nancymaae
ENSGACG00000005717	pum1	92	96.808	ENSACLG00000019354	pum1	100	96.808	Astatotilapia_calliptera
ENSGACG00000005717	pum1	100	81.601	ENSAMXG00000020607	pum1	96	81.431	Astyanax_mexicanus
ENSGACG00000005717	pum1	100	76.359	ENSBTAG00000018979	PUM1	100	81.281	Bos_taurus
ENSGACG00000005717	pum1	100	76.689	ENSCJAG00000006035	PUM1	100	81.034	Callithrix_jacchus
ENSGACG00000005717	pum1	92	78.422	ENSCAFG00020024616	PUM1	98	81.158	Canis_lupus_dingo
ENSGACG00000005717	pum1	100	76.359	ENSCHIG00000012952	PUM1	100	76.507	Capra_hircus
ENSGACG00000005717	pum1	100	76.359	ENSTSYG00000008868	PUM1	100	82.169	Carlito_syrichta
ENSGACG00000005717	pum1	100	76.112	ENSCPOG00000031613	PUM1	100	80.788	Cavia_porcellus
ENSGACG00000005717	pum1	94	91.325	ENSCATG00000017991	PUM1	93	91.807	Cercocebus_atys
ENSGACG00000005717	pum1	100	76.112	ENSCLAG00000007662	PUM1	100	80.788	Chinchilla_lanigera
ENSGACG00000005717	pum1	100	75.429	ENSCSAG00000001028	PUM1	100	73.835	Chlorocebus_sabaeus
ENSGACG00000005717	pum1	93	65.455	ENSCHOG00000010245	PUM1	93	65.459	Choloepus_hoffmanni
ENSGACG00000005717	pum1	100	76.461	ENSCPBG00000009288	PUM1	100	81.281	Chrysemys_picta_bellii
ENSGACG00000005717	pum1	94	90.843	ENSCANG00000042606	PUM1	100	81.034	Colobus_angolensis_palliatus
ENSGACG00000005717	pum1	100	75.433	ENSCGRG00001024949	Pum1	100	82.411	Cricetulus_griseus_chok1gshd
ENSGACG00000005717	pum1	100	75.433	ENSCGRG00000014197	Pum1	100	82.411	Cricetulus_griseus_crigri
ENSGACG00000005717	pum1	92	94.189	ENSCSEG00000015981	pum1	100	94.189	Cynoglossus_semilaevis
ENSGACG00000005717	pum1	100	96.207	ENSCVAG00000007043	pum1	99	96.207	Cyprinodon_variegatus
ENSGACG00000005717	pum1	100	83.319	ENSDARG00000099256	pum1	99	80.750	Danio_rerio
ENSGACG00000005717	pum1	100	76.359	ENSDNOG00000010939	PUM1	100	74.835	Dasypus_novemcinctus
ENSGACG00000005717	pum1	90	72.334	ENSETEG00000004355	PUM1	87	71.716	Echinops_telfairi
ENSGACG00000005717	pum1	100	76.359	ENSEASG00005010813	PUM1	100	74.752	Equus_asinus_asinus
ENSGACG00000005717	pum1	100	76.277	ENSECAG00000021369	PUM1	100	74.670	Equus_caballus
ENSGACG00000005717	pum1	76	90.444	ENSEEUG00000003871	PUM1	74	90.889	Erinaceus_europaeus
ENSGACG00000005717	pum1	100	88.366	ENSELUG00000002409	pum1	99	91.304	Esox_lucius
ENSGACG00000005717	pum1	100	76.442	ENSFCAG00000010374	PUM1	100	81.158	Felis_catus
ENSGACG00000005717	pum1	100	75.780	ENSFALG00000001214	PUM1	97	74.359	Ficedula_albicollis
ENSGACG00000005717	pum1	100	76.112	ENSFDAG00000011319	PUM1	100	80.788	Fukomys_damarensis
ENSGACG00000005717	pum1	100	89.798	ENSGMOG00000010491	pum1	99	90.660	Gadus_morhua
ENSGACG00000005717	pum1	96	90.141	ENSGALG00000042598	PUM1	99	90.141	Gallus_gallus
ENSGACG00000005717	pum1	100	96.207	ENSGAFG00000015617	pum1	100	97.590	Gambusia_affinis
ENSGACG00000005717	pum1	96	90.342	ENSGAGG00000001290	PUM1	99	90.342	Gopherus_agassizii
ENSGACG00000005717	pum1	94	90.843	ENSGGOG00000011983	PUM1	100	81.034	Gorilla_gorilla
ENSGACG00000005717	pum1	100	96.897	ENSHBUG00000018718	pum1	99	96.897	Haplochromis_burtoni
ENSGACG00000005717	pum1	100	76.030	ENSHGLG00000013819	Pum1	100	80.665	Heterocephalus_glaber_female
ENSGACG00000005717	pum1	100	76.030	ENSHGLG00100008621	Pum1	100	80.665	Heterocephalus_glaber_male
ENSGACG00000005717	pum1	92	88.837	ENSHCOG00000005149	pum1	100	89.493	Hippocampus_comes
ENSGACG00000005717	pum1	100	80.356	ENSIPUG00000020421	pum1	99	80.356	Ictalurus_punctatus
ENSGACG00000005717	pum1	100	76.359	ENSSTOG00000010757	PUM1	100	81.034	Ictidomys_tridecemlineatus
ENSGACG00000005717	pum1	100	76.359	ENSJJAG00000000530	Pum1	100	81.158	Jaculus_jaculus
ENSGACG00000005717	pum1	100	96.207	ENSKMAG00000003481	pum1	99	96.207	Kryptolebias_marmoratus
ENSGACG00000005717	pum1	100	96.638	ENSLBEG00000002527	pum1	99	96.638	Labrus_bergylta
ENSGACG00000005717	pum1	100	75.557	ENSLACG00000017188	PUM1	99	73.045	Latimeria_chalumnae
ENSGACG00000005717	pum1	100	82.558	ENSLOCG00000005210	pum1	99	81.047	Lepisosteus_oculatus
ENSGACG00000005717	pum1	100	75.927	ENSLAFG00000003178	PUM1	100	75.145	Loxodonta_africana
ENSGACG00000005717	pum1	94	91.325	ENSMFAG00000010291	PUM1	100	81.034	Macaca_fascicularis
ENSGACG00000005717	pum1	94	90.843	ENSMMUG00000013520	PUM1	100	81.034	Macaca_mulatta
ENSGACG00000005717	pum1	94	90.843	ENSMNEG00000034639	PUM1	100	81.034	Macaca_nemestrina
ENSGACG00000005717	pum1	94	90.843	ENSMLEG00000038743	PUM1	100	81.034	Mandrillus_leucophaeus
ENSGACG00000005717	pum1	100	96.379	ENSMAMG00000011606	pum1	99	96.483	Mastacembelus_armatus
ENSGACG00000005717	pum1	100	96.897	ENSMZEG00005005834	pum1	99	96.897	Maylandia_zebra
ENSGACG00000005717	pum1	100	76.368	ENSMGAG00000000724	PUM1	100	76.067	Meleagris_gallopavo
ENSGACG00000005717	pum1	100	76.238	ENSMAUG00000022090	Pum1	100	82.759	Mesocricetus_auratus
ENSGACG00000005717	pum1	94	89.663	ENSMICG00000012213	-	99	73.179	Microcebus_murinus
ENSGACG00000005717	pum1	100	76.316	ENSMICG00000007713	-	100	80.788	Microcebus_murinus
ENSGACG00000005717	pum1	100	75.680	ENSMOCG00000015463	Pum1	100	82.534	Microtus_ochrogaster
ENSGACG00000005717	pum1	85	98.313	ENSMMOG00000019817	pum1	100	98.313	Mola_mola
ENSGACG00000005717	pum1	100	76.049	ENSMODG00000017067	PUM1	100	74.752	Monodelphis_domestica
ENSGACG00000005717	pum1	85	98.795	ENSMALG00000016399	pum1	100	98.795	Monopterus_albus
ENSGACG00000005717	pum1	100	75.288	MGP_CAROLIEiJ_G0026549	Pum1	100	80.665	Mus_caroli
ENSGACG00000005717	pum1	100	75.288	ENSMUSG00000028580	Pum1	100	80.542	Mus_musculus
ENSGACG00000005717	pum1	100	75.206	MGP_PahariEiJ_G0028881	Pum1	100	80.542	Mus_pahari
ENSGACG00000005717	pum1	100	75.783	MGP_SPRETEiJ_G0027529	Pum1	100	80.542	Mus_spretus
ENSGACG00000005717	pum1	100	76.606	ENSMPUG00000015454	PUM1	100	74.752	Mustela_putorius_furo
ENSGACG00000005717	pum1	100	76.277	ENSMLUG00000006490	PUM1	100	74.587	Myotis_lucifugus
ENSGACG00000005717	pum1	100	76.277	ENSNGAG00000002378	Pum1	100	81.034	Nannospalax_galili
ENSGACG00000005717	pum1	79	97.375	ENSNBRG00000010689	pum1	100	96.770	Neolamprologus_brichardi
ENSGACG00000005717	pum1	94	87.711	ENSNLEG00000001151	PUM1	100	88.193	Nomascus_leucogenys
ENSGACG00000005717	pum1	73	78.276	ENSMEUG00000000976	-	67	80.418	Notamacropus_eugenii
ENSGACG00000005717	pum1	81	90.654	ENSOPRG00000001776	PUM1	75	90.654	Ochotona_princeps
ENSGACG00000005717	pum1	100	76.112	ENSODEG00000003465	PUM1	100	80.788	Octodon_degus
ENSGACG00000005717	pum1	100	96.983	ENSONIG00000002290	pum1	99	96.983	Oreochromis_niloticus
ENSGACG00000005717	pum1	85	63.360	ENSOANG00000004902	-	100	61.414	Ornithorhynchus_anatinus
ENSGACG00000005717	pum1	99	76.320	ENSOCUG00000008641	PUM1	99	74.711	Oryctolagus_cuniculus
ENSGACG00000005717	pum1	100	95.790	ENSORLG00000011482	pum1	99	95.790	Oryzias_latipes
ENSGACG00000005717	pum1	100	95.790	ENSORLG00020019461	pum1	99	95.790	Oryzias_latipes_hni
ENSGACG00000005717	pum1	100	95.876	ENSORLG00015011375	pum1	99	95.876	Oryzias_latipes_hsok
ENSGACG00000005717	pum1	87	97.831	ENSOMEG00000009312	pum1	100	97.831	Oryzias_melastigma
ENSGACG00000005717	pum1	100	73.766	ENSOGAG00000011063	PUM1	100	72.076	Otolemur_garnettii
ENSGACG00000005717	pum1	100	75.783	ENSOARG00000001899	PUM1	100	74.257	Ovis_aries
ENSGACG00000005717	pum1	94	90.843	ENSPPAG00000044003	PUM1	100	81.034	Pan_paniscus
ENSGACG00000005717	pum1	100	76.442	ENSPPRG00000001370	PUM1	100	81.158	Panthera_pardus
ENSGACG00000005717	pum1	100	76.277	ENSPTIG00000010798	PUM1	100	81.404	Panthera_tigris_altaica
ENSGACG00000005717	pum1	94	90.843	ENSPTRG00000000453	PUM1	100	81.034	Pan_troglodytes
ENSGACG00000005717	pum1	94	91.325	ENSPANG00000016338	PUM1	100	81.034	Papio_anubis
ENSGACG00000005717	pum1	95	92.048	ENSPKIG00000010578	pum1	100	84.713	Paramormyrops_kingsleyae
ENSGACG00000005717	pum1	100	76.936	ENSPSIG00000014118	PUM1	100	75.248	Pelodiscus_sinensis
ENSGACG00000005717	pum1	79	96.522	ENSPMGG00000005836	pum1	99	96.522	Periophthalmus_magnuspinnatus
ENSGACG00000005717	pum1	100	76.238	ENSPEMG00000010009	Pum1	100	82.759	Peromyscus_maniculatus_bairdii
ENSGACG00000005717	pum1	100	76.132	ENSPCIG00000014151	PUM1	100	81.034	Phascolarctos_cinereus
ENSGACG00000005717	pum1	96	93.896	ENSPFOG00000007289	pum1	99	96.914	Poecilia_formosa
ENSGACG00000005717	pum1	100	92.791	ENSPLAG00000007256	pum1	99	95.979	Poecilia_latipinna
ENSGACG00000005717	pum1	92	95.042	ENSPMEG00000019543	pum1	99	95.323	Poecilia_mexicana
ENSGACG00000005717	pum1	100	95.690	ENSPREG00000005195	pum1	99	95.948	Poecilia_reticulata
ENSGACG00000005717	pum1	100	74.960	ENSPPYG00000001621	PUM1	100	73.382	Pongo_abelii
ENSGACG00000005717	pum1	77	93.210	ENSPCAG00000001979	PUM1	74	93.210	Procavia_capensis
ENSGACG00000005717	pum1	100	76.277	ENSPCOG00000004398	PUM1	100	80.788	Propithecus_coquereli
ENSGACG00000005717	pum1	100	74.608	ENSPVAG00000005207	PUM1	97	73.080	Pteropus_vampyrus
ENSGACG00000005717	pum1	100	96.983	ENSPNYG00000009518	pum1	99	96.983	Pundamilia_nyererei
ENSGACG00000005717	pum1	100	81.942	ENSPNAG00000026728	pum1	100	81.257	Pygocentrus_nattereri
ENSGACG00000005717	pum1	100	75.371	ENSRNOG00000011709	Pum1	100	74.422	Rattus_norvegicus
ENSGACG00000005717	pum1	94	91.325	ENSRBIG00000042521	PUM1	100	81.034	Rhinopithecus_bieti
ENSGACG00000005717	pum1	94	90.843	ENSRROG00000020156	PUM1	100	81.034	Rhinopithecus_roxellana
ENSGACG00000005717	pum1	100	76.606	ENSSBOG00000032037	PUM1	100	81.034	Saimiri_boliviensis_boliviensis
ENSGACG00000005717	pum1	100	76.132	ENSSHAG00000010918	PUM1	100	74.835	Sarcophilus_harrisii
ENSGACG00000005717	pum1	100	96.466	ENSSMAG00000010918	pum1	100	98.795	Scophthalmus_maximus
ENSGACG00000005717	pum1	100	97.241	ENSSDUG00000009021	pum1	99	97.241	Seriola_dumerili
ENSGACG00000005717	pum1	95	96.842	ENSSLDG00000009667	pum1	100	96.842	Seriola_lalandi_dorsalis
ENSGACG00000005717	pum1	94	79.425	ENSSARG00000003055	PUM1	91	77.384	Sorex_araneus
ENSGACG00000005717	pum1	100	76.771	ENSSPUG00000006267	PUM1	100	75.062	Sphenodon_punctatus
ENSGACG00000005717	pum1	100	97.241	ENSSPAG00000016636	pum1	100	98.795	Stegastes_partitus
ENSGACG00000005717	pum1	100	88.934	ENSSSCG00000003591	PUM1	95	89.336	Sus_scrofa
ENSGACG00000005717	pum1	100	96.034	ENSTRUG00000013121	pum1	100	97.391	Takifugu_rubripes
ENSGACG00000005717	pum1	100	95.197	ENSTNIG00000016983	pum1	99	94.854	Tetraodon_nigroviridis
ENSGACG00000005717	pum1	87	89.024	ENSTBEG00000013810	PUM1	89	89.024	Tupaia_belangeri
ENSGACG00000005717	pum1	93	78.344	ENSTTRG00000007436	PUM1	88	77.112	Tursiops_truncatus
ENSGACG00000005717	pum1	99	74.595	ENSUAMG00000018262	-	100	72.924	Ursus_americanus
ENSGACG00000005717	pum1	93	83.538	ENSVPAG00000005902	PUM1	92	81.527	Vicugna_pacos
ENSGACG00000005717	pum1	100	76.359	ENSVVUG00000014631	PUM1	100	76.507	Vulpes_vulpes
ENSGACG00000005717	pum1	100	72.659	ENSXETG00000012904	pum1	99	71.346	Xenopus_tropicalis
ENSGACG00000005717	pum1	100	95.776	ENSXMAG00000002945	pum1	99	96.296	Xiphophorus_maculatus