EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000006073 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 7116 bases
Position: chrgroupXVI:11690439-11697554
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000008032	ResIII	PF04851.15	1.4e-07	1	1
ENSGACP00000008040	ResIII	PF04851.15	2.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000008059	SMARCAL1-202	1899	-	ENSGACP00000008040	633 (aa)	-	G3NRS3
ENSGACT00000008051	SMARCAL1-201	1587	-	ENSGACP00000008032	529 (aa)	-	G3NRR5

Gene Model

Click here to download ENSGACG00000006073's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000006073's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000006073	SMARCAL1	99	64.739	ENSG00000138375	SMARCAL1	99	65.839	Homo_sapiens
ENSGACG00000006073	SMARCAL1	100	86.965	ENSAPOG00000020156	SMARCAL1	75	84.299	Acanthochromis_polyacanthus
ENSGACG00000006073	SMARCAL1	100	85.847	ENSACIG00000001500	smarcal1	90	84.112	Amphilophus_citrinellus
ENSGACG00000006073	SMARCAL1	100	85.661	ENSAOCG00000014266	SMARCAL1	83	83.364	Amphiprion_ocellaris
ENSGACG00000006073	SMARCAL1	100	86.220	ENSAPEG00000015861	SMARCAL1	81	83.551	Amphiprion_percula
ENSGACG00000006073	SMARCAL1	100	86.220	ENSATEG00000020624	SMARCAL1	81	84.673	Anabas_testudineus
ENSGACG00000006073	SMARCAL1	99	67.724	ENSAPLG00000009864	SMARCAL1	62	67.724	Anas_platyrhynchos
ENSGACG00000006073	SMARCAL1	100	68.715	ENSACAG00000004612	SMARCAL1	64	66.916	Anolis_carolinensis
ENSGACG00000006073	SMARCAL1	100	85.475	ENSACLG00000015990	SMARCAL1	88	83.738	Astatotilapia_calliptera
ENSGACG00000006073	SMARCAL1	100	77.467	ENSAMXG00000003350	smarcal1	87	75.701	Astyanax_mexicanus
ENSGACG00000006073	SMARCAL1	100	68.715	ENSCPBG00000013599	SMARCAL1	70	68.037	Chrysemys_picta_bellii
ENSGACG00000006073	SMARCAL1	99	52.602	ENSCING00000009308	-	92	52.354	Ciona_intestinalis
ENSGACG00000006073	SMARCAL1	100	81.970	ENSCSEG00000010785	SMARCAL1	90	79.478	Cynoglossus_semilaevis
ENSGACG00000006073	SMARCAL1	100	82.682	ENSCVAG00000018780	SMARCAL1	89	81.121	Cyprinodon_variegatus
ENSGACG00000006073	SMARCAL1	78	59.762	ENSEBUG00000011906	SMARCAL1	69	59.762	Eptatretus_burgeri
ENSGACG00000006073	SMARCAL1	100	77.095	ENSELUG00000010440	-	65	73.070	Esox_lucius
ENSGACG00000006073	SMARCAL1	100	67.598	ENSFALG00000003981	SMARCAL1	69	66.187	Ficedula_albicollis
ENSGACG00000006073	SMARCAL1	100	83.613	ENSFHEG00000008380	SMARCAL1	87	80.899	Fundulus_heteroclitus
ENSGACG00000006073	SMARCAL1	82	69.923	ENSGMOG00000010034	smarcal1	100	69.923	Gadus_morhua
ENSGACG00000006073	SMARCAL1	100	67.784	ENSGALG00000011475	RPL37A	63	66.355	Gallus_gallus
ENSGACG00000006073	SMARCAL1	100	68.901	ENSGAGG00000015660	SMARCAL1	66	68.901	Gopherus_agassizii
ENSGACG00000006073	SMARCAL1	100	85.289	ENSHBUG00000002973	smarcal1	87	83.551	Haplochromis_burtoni
ENSGACG00000006073	SMARCAL1	99	82.276	ENSHCOG00000017921	smarcal1	89	79.626	Hippocampus_comes
ENSGACG00000006073	SMARCAL1	100	84.358	ENSKMAG00000012023	SMARCAL1	90	82.056	Kryptolebias_marmoratus
ENSGACG00000006073	SMARCAL1	98	85.009	ENSLBEG00000003493	smarcal1	84	82.109	Labrus_bergylta
ENSGACG00000006073	SMARCAL1	100	85.661	ENSLBEG00000022915	smarcal1	93	82.617	Labrus_bergylta
ENSGACG00000006073	SMARCAL1	100	63.501	ENSLACG00000010974	SMARCAL1	65	63.501	Latimeria_chalumnae
ENSGACG00000006073	SMARCAL1	100	74.860	ENSLOCG00000009637	smarcal1	79	73.645	Lepisosteus_oculatus
ENSGACG00000006073	SMARCAL1	100	86.778	ENSMAMG00000000828	SMARCAL1	91	81.949	Mastacembelus_armatus
ENSGACG00000006073	SMARCAL1	100	85.475	ENSMZEG00005007660	SMARCAL1	88	83.738	Maylandia_zebra
ENSGACG00000006073	SMARCAL1	100	67.970	ENSMGAG00000011658	SMARCAL1	64	66.729	Meleagris_gallopavo
ENSGACG00000006073	SMARCAL1	99	81.308	ENSMMOG00000003842	smarcal1	91	76.114	Mola_mola
ENSGACG00000006073	SMARCAL1	100	66.480	ENSMODG00000015544	SMARCAL1	68	63.569	Monodelphis_domestica
ENSGACG00000006073	SMARCAL1	100	84.916	ENSNBRG00000016273	smarcal1	91	83.178	Neolamprologus_brichardi
ENSGACG00000006073	SMARCAL1	100	65.736	ENSMEUG00000004395	SMARCAL1	72	66.108	Notamacropus_eugenii
ENSGACG00000006073	SMARCAL1	100	86.034	ENSONIG00000009036	smarcal1	91	85.661	Oreochromis_niloticus
ENSGACG00000006073	SMARCAL1	100	83.054	ENSORLG00000016455	SMARCAL1	87	80.561	Oryzias_latipes
ENSGACG00000006073	SMARCAL1	100	82.682	ENSORLG00020001610	SMARCAL1	87	80.374	Oryzias_latipes_hni
ENSGACG00000006073	SMARCAL1	100	83.054	ENSORLG00015001865	SMARCAL1	87	80.748	Oryzias_latipes_hsok
ENSGACG00000006073	SMARCAL1	100	83.613	ENSOMEG00000001845	smarcal1	87	81.121	Oryzias_melastigma
ENSGACG00000006073	SMARCAL1	100	82.037	ENSPMGG00000019092	SMARCAL1	88	77.957	Periophthalmus_magnuspinnatus
ENSGACG00000006073	SMARCAL1	99	65.981	ENSPCIG00000022514	SMARCAL1	71	65.981	Phascolarctos_cinereus
ENSGACG00000006073	SMARCAL1	100	82.593	ENSPFOG00000000560	SMARCAL1	87	80.483	Poecilia_formosa
ENSGACG00000006073	SMARCAL1	100	82.593	ENSPMEG00000018146	SMARCAL1	87	80.483	Poecilia_mexicana
ENSGACG00000006073	SMARCAL1	80	85.545	ENSPREG00000009591	SMARCAL1	85	85.337	Poecilia_reticulata
ENSGACG00000006073	SMARCAL1	100	77.654	ENSPNAG00000014900	smarcal1	83	76.262	Pygocentrus_nattereri
ENSGACG00000006073	SMARCAL1	100	61.949	ENSSHAG00000013538	SMARCAL1	71	58.979	Sarcophilus_harrisii
ENSGACG00000006073	SMARCAL1	100	86.592	ENSSMAG00000010427	SMARCAL1	83	82.804	Scophthalmus_maximus
ENSGACG00000006073	SMARCAL1	100	86.592	ENSSDUG00000017470	SMARCAL1	83	83.925	Seriola_dumerili
ENSGACG00000006073	SMARCAL1	100	86.406	ENSSLDG00000007224	SMARCAL1	82	84.112	Seriola_lalandi_dorsalis
ENSGACG00000006073	SMARCAL1	100	69.832	ENSSPUG00000015369	SMARCAL1	60	69.832	Sphenodon_punctatus
ENSGACG00000006073	SMARCAL1	100	87.337	ENSSPAG00000003742	smarcal1	93	85.421	Stegastes_partitus
ENSGACG00000006073	SMARCAL1	100	62.082	ENSSSCG00000035501	SMARCAL1	69	61.495	Sus_scrofa
ENSGACG00000006073	SMARCAL1	100	66.853	ENSTGUG00000005079	SMARCAL1	90	66.292	Taeniopygia_guttata
ENSGACG00000006073	SMARCAL1	100	79.962	ENSTRUG00000010701	SMARCAL1	90	68.207	Takifugu_rubripes
ENSGACG00000006073	SMARCAL1	100	52.788	ENSTTRG00000009001	SMARCAL1	71	52.523	Tursiops_truncatus
ENSGACG00000006073	SMARCAL1	100	69.088	ENSXETG00000000465	smarcal1	81	67.850	Xenopus_tropicalis