EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSGACG00000006162 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: RAB5CL|RABL
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 4027 bases
Position: chrgroupV:8116939-8120965
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000008183	MMR_HSR1	PF01926.23	0.00014	1	1
ENSGACP00000008204	MMR_HSR1	PF01926.23	0.00014	1	1
ENSGACP00000008178	MMR_HSR1	PF01926.23	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000008197	-	837	-	ENSGACP00000008178	222 (aa)	-	G3NS61
ENSGACT00000008202	-	861	-	ENSGACP00000008183	220 (aa)	-	G3NS66
ENSGACT00000008223	-	880	-	ENSGACP00000008204	220 (aa)	-	G3NS66

Gene Model

Click here to download ENSGACG00000006162's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000006162's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000006162	-	66	32.432	ENSGACG00000019134	si:cabz01085950.1	72	32.432
ENSGACG00000006162	-	89	43.367	ENSGACG00000019642	-	99	41.000
ENSGACG00000006162	-	75	36.747	ENSGACG00000020437	-	78	37.736
ENSGACG00000006162	-	89	42.051	ENSGACG00000000789	rab1ba	95	42.051
ENSGACG00000006162	-	73	41.615	ENSGACG00000016799	-	94	41.615
ENSGACG00000006162	-	88	37.000	ENSGACG00000009647	RAB7A	96	37.000
ENSGACG00000006162	-	76	40.116	ENSGACG00000000807	-	84	40.116
ENSGACG00000006162	-	99	86.697	ENSGACG00000008659	rab5c	99	86.697
ENSGACG00000006162	-	70	40.260	ENSGACG00000005979	RAB15	74	40.260
ENSGACG00000006162	-	90	36.715	ENSGACG00000016164	rab4a	94	36.715
ENSGACG00000006162	-	73	31.138	ENSGACG00000011607	rab32b	75	31.138
ENSGACG00000006162	-	99	34.375	ENSGACG00000019767	-	99	34.375
ENSGACG00000006162	-	89	34.314	ENSGACG00000014578	RAB9A	97	34.314
ENSGACG00000006162	-	82	36.022	ENSGACG00000001725	zgc:101559	79	36.022
ENSGACG00000006162	-	54	30.328	ENSGACG00000011972	arl8bb	69	30.328
ENSGACG00000006162	-	55	39.669	ENSGACG00000003527	rab20	50	39.669
ENSGACG00000006162	-	73	32.335	ENSGACG00000010473	RAB29	80	32.335
ENSGACG00000006162	-	75	34.104	ENSGACG00000003972	rab9a	83	34.104
ENSGACG00000006162	-	89	36.923	ENSGACG00000013548	rab35b	96	36.923
ENSGACG00000006162	-	76	30.357	ENSGACG00000000729	rhebl1	91	30.357
ENSGACG00000006162	-	85	32.124	ENSGACG00000011340	hrasb	94	31.844
ENSGACG00000006162	-	88	30.392	ENSGACG00000020514	rab34b	79	30.392
ENSGACG00000006162	-	71	47.771	ENSGACG00000013259	rab11al	73	47.771
ENSGACG00000006162	-	76	43.713	ENSGACG00000012006	rab30	84	43.713
ENSGACG00000006162	-	90	44.724	ENSGACG00000004965	rab25a	95	44.724
ENSGACG00000006162	-	88	38.776	ENSGACG00000011925	rab13	96	38.191
ENSGACG00000006162	-	89	49.746	ENSGACG00000005608	rab22a	98	49.746
ENSGACG00000006162	-	95	38.249	ENSGACG00000003726	rab6ba	99	38.249
ENSGACG00000006162	-	73	37.349	ENSGACG00000018745	rab33a	71	37.349
ENSGACG00000006162	-	89	30.198	ENSGACG00000012474	rabl2	90	30.198
ENSGACG00000006162	-	92	39.320	ENSGACG00000020356	rab6a	96	39.320
ENSGACG00000006162	-	89	44.670	ENSGACG00000003864	rab1ab	96	44.670
ENSGACG00000006162	-	80	41.808	ENSGACG00000013401	zgc:171927	86	43.275
ENSGACG00000006162	-	73	43.210	ENSGACG00000018847	-	72	43.210
ENSGACG00000006162	-	99	82.949	ENSGACG00000004997	rab5aa	99	82.949
ENSGACG00000006162	-	74	31.902	ENSGACG00000011661	kras	83	31.902
ENSGACG00000006162	-	72	37.500	ENSGACG00000005397	si:ch211-247i17.1	91	37.500
ENSGACG00000006162	-	96	37.156	ENSGACG00000014915	si:dkey-16l2.16	94	37.156
ENSGACG00000006162	-	89	40.686	ENSGACG00000015479	rab11bb	94	40.686
ENSGACG00000006162	-	95	36.842	ENSGACG00000017153	rab41	99	36.842
ENSGACG00000006162	-	90	39.303	ENSGACG00000013721	rab6bb	97	39.303
ENSGACG00000006162	-	73	33.750	ENSGACG00000006151	rab23	73	34.884
ENSGACG00000006162	-	88	33.168	ENSGACG00000018291	rab9b	96	33.168
ENSGACG00000006162	-	73	46.951	ENSGACG00000013249	rab25b	78	46.951
ENSGACG00000006162	-	77	42.353	ENSGACG00000001694	rab18a	95	39.706
ENSGACG00000006162	-	72	36.076	ENSGACG00000013611	-	77	36.076
ENSGACG00000006162	-	75	35.928	ENSGACG00000001950	RAB39B	78	35.928
ENSGACG00000006162	-	73	39.130	ENSGACG00000007722	rab15	88	40.411
ENSGACG00000006162	-	80	31.818	ENSGACG00000016680	rheb	93	31.818
ENSGACG00000006162	-	90	36.946	ENSGACG00000016639	rab12	83	36.946
ENSGACG00000006162	-	89	39.706	ENSGACG00000013297	-	93	39.706
ENSGACG00000006162	-	91	40.299	ENSGACG00000016395	rab18b	96	40.099
ENSGACG00000006162	-	90	36.715	ENSGACG00000019540	rab33ba	88	36.715
ENSGACG00000006162	-	76	41.071	ENSGACG00000014905	rab2a	79	41.071