EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000007266 (Gene tree)
Gene ID: -
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine/arginine repetitive matrix 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 8922 bases
Position: chrgroupXV:4161690-4170611
Accession: ZDB-GENE-040426-2789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000009637	PWI	PF01480.17	1.9e-31	1	1
ENSGACP00000009631	PWI	PF01480.17	1.4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000009657	-	771	-	ENSGACP00000009637	257 (aa)	-	G3NWB8
ENSGACT00000009651	-	2612	-	ENSGACP00000009631	863 (aa)	-	G3NWB2

Gene Model

Click here to download ENSGACG00000007266's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000007266's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000007266	srrm1	65	92.899	ENSAPOG00000001170	srrm1	99	100.000	Acanthochromis_polyacanthus
ENSGACG00000007266	srrm1	100	71.061	ENSAOCG00000021757	srrm1	60	82.785	Amphiprion_ocellaris
ENSGACG00000007266	srrm1	100	70.615	ENSAPEG00000018964	srrm1	60	82.012	Amphiprion_percula
ENSGACG00000007266	srrm1	77	90.533	ENSATEG00000007659	srrm1	60	80.539	Anabas_testudineus
ENSGACG00000007266	srrm1	70	88.889	ENSDARG00000001244	srrm1	99	96.154	Danio_rerio
ENSGACG00000007266	srrm1	61	94.304	ENSELUG00000003385	srrm1	99	97.436	Esox_lucius
ENSGACG00000007266	srrm1	56	98.601	ENSGMOG00000019099	srrm1	72	75.365	Gadus_morhua
ENSGACG00000007266	srrm1	65	92.814	ENSHCOG00000012829	srrm1	59	70.420	Hippocampus_comes
ENSGACG00000007266	srrm1	81	96.407	ENSLBEG00000013936	srrm1	60	81.853	Labrus_bergylta
ENSGACG00000007266	srrm1	71	97.917	ENSMAMG00000010305	srrm1	60	79.769	Mastacembelus_armatus
ENSGACG00000007266	srrm1	71	82.927	ENSORLG00015014743	srrm1	61	73.501	Oryzias_latipes_hsok
ENSGACG00000007266	srrm1	71	82.927	ENSOMEG00000014110	srrm1	74	100.000	Oryzias_melastigma
ENSGACG00000007266	srrm1	63	93.789	ENSPKIG00000008252	srrm1	63	74.648	Paramormyrops_kingsleyae
ENSGACG00000007266	srrm1	95	86.979	ENSPLAG00000002058	srrm1	77	100.000	Poecilia_latipinna
ENSGACG00000007266	srrm1	95	86.979	ENSPLAG00000006807	srrm1	99	100.000	Poecilia_latipinna
ENSGACG00000007266	srrm1	55	77.391	ENSPMEG00000002603	srrm1	55	73.318	Poecilia_mexicana
ENSGACG00000007266	srrm1	85	86.979	ENSPREG00000002652	srrm1	59	71.893	Poecilia_reticulata
ENSGACG00000007266	srrm1	87	82.927	ENSSDUG00000012967	srrm1	60	82.274	Seriola_dumerili
ENSGACG00000007266	srrm1	87	82.927	ENSSLDG00000012771	srrm1	60	82.466	Seriola_lalandi_dorsalis
ENSGACG00000007266	srrm1	100	70.333	ENSSPAG00000009507	srrm1	60	82.081	Stegastes_partitus
ENSGACG00000007266	srrm1	74	86.387	ENSTRUG00000002519	srrm1	60	74.806	Takifugu_rubripes
ENSGACG00000007266	srrm1	88	73.750	ENSXCOG00000011828	srrm1	77	100.000	Xiphophorus_couchianus
ENSGACG00000007266	srrm1	69	86.979	ENSXMAG00000018863	srrm1	99	63.180	Xiphophorus_maculatus