EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000007680 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zgc:171482
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 17845 bases
Position: chrgroupVI:8990209-9008053
Accession: ZDB-GENE-080204-84
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000010181	zf-met	PF12874.7	2.2e-27	1	4
ENSGACP00000010181	zf-met	PF12874.7	2.2e-27	2	4
ENSGACP00000010181	zf-met	PF12874.7	2.2e-27	3	4
ENSGACP00000010181	zf-met	PF12874.7	2.2e-27	4	4
ENSGACP00000010181	zf-C2H2_jaz	PF12171.8	1e-20	1	2
ENSGACP00000010181	zf-C2H2_jaz	PF12171.8	1e-20	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000010203	-	699	-	ENSGACP00000010181	232 (aa)	-	G3NXW1

Gene Model

Click here to download ENSGACG00000007680's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000007680's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000007680	zgc:171482	97	42.544	ENSGACG00000020800	znf346	82	42.544
ENSGACG00000007680	zgc:171482	97	64.000	ENSGACG00000005515	zmat4a	96	64.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000007680	zgc:171482	100	88.362	ENSAPOG00000019970	zgc:171482	100	88.362	Acanthochromis_polyacanthus
ENSGACG00000007680	zgc:171482	80	96.667	ENSACIG00000021512	zgc:171482	90	96.667	Amphilophus_citrinellus
ENSGACG00000007680	zgc:171482	80	95.238	ENSAOCG00000000751	zgc:171482	93	95.238	Amphiprion_ocellaris
ENSGACG00000007680	zgc:171482	80	95.968	ENSAPEG00000014154	zgc:171482	89	95.968	Amphiprion_percula
ENSGACG00000007680	zgc:171482	100	85.345	ENSATEG00000001371	zgc:171482	100	85.776	Anabas_testudineus
ENSGACG00000007680	zgc:171482	80	95.200	ENSACLG00000010511	zgc:171482	87	95.200	Astatotilapia_calliptera
ENSGACG00000007680	zgc:171482	100	82.759	ENSAMXG00000002299	zgc:171482	93	91.057	Astyanax_mexicanus
ENSGACG00000007680	zgc:171482	100	93.333	ENSCSEG00000006509	zgc:171482	100	93.333	Cynoglossus_semilaevis
ENSGACG00000007680	zgc:171482	100	88.793	ENSCVAG00000013606	zgc:171482	100	88.793	Cyprinodon_variegatus
ENSGACG00000007680	zgc:171482	99	83.983	ENSDARG00000074415	zgc:171482	99	91.489	Danio_rerio
ENSGACG00000007680	zgc:171482	81	63.684	ENSELUG00000017517	-	60	84.444	Esox_lucius
ENSGACG00000007680	zgc:171482	80	94.262	ENSELUG00000021817	zgc:171482	90	92.800	Esox_lucius
ENSGACG00000007680	zgc:171482	100	85.043	ENSFHEG00000002233	zgc:171482	100	86.207	Fundulus_heteroclitus
ENSGACG00000007680	zgc:171482	100	86.638	ENSGMOG00000010508	zgc:171482	100	86.638	Gadus_morhua
ENSGACG00000007680	zgc:171482	100	97.500	ENSGAFG00000009398	zgc:171482	100	97.500	Gambusia_affinis
ENSGACG00000007680	zgc:171482	80	95.200	ENSHBUG00000023289	zgc:171482	94	95.200	Haplochromis_burtoni
ENSGACG00000007680	zgc:171482	80	90.476	ENSHCOG00000018086	zgc:171482	94	90.476	Hippocampus_comes
ENSGACG00000007680	zgc:171482	80	93.277	ENSIPUG00000000361	zgc:171482	86	93.277	Ictalurus_punctatus
ENSGACG00000007680	zgc:171482	100	85.776	ENSKMAG00000005077	zgc:171482	86	85.776	Kryptolebias_marmoratus
ENSGACG00000007680	zgc:171482	80	88.235	ENSLBEG00000023823	zgc:171482	97	88.235	Labrus_bergylta
ENSGACG00000007680	zgc:171482	99	83.117	ENSLOCG00000008863	zgc:171482	97	83.190	Lepisosteus_oculatus
ENSGACG00000007680	zgc:171482	99	88.489	ENSMAMG00000001031	zgc:171482	79	95.200	Mastacembelus_armatus
ENSGACG00000007680	zgc:171482	100	87.931	ENSMZEG00005027721	zgc:171482	100	87.931	Maylandia_zebra
ENSGACG00000007680	zgc:171482	87	96.800	ENSMMOG00000010523	zgc:171482	97	96.800	Mola_mola
ENSGACG00000007680	zgc:171482	100	90.086	ENSMALG00000017883	zgc:171482	100	90.086	Monopterus_albus
ENSGACG00000007680	zgc:171482	80	98.276	ENSNBRG00000021035	zgc:171482	87	98.276	Neolamprologus_brichardi
ENSGACG00000007680	zgc:171482	99	92.208	ENSONIG00000018365	zgc:171482	98	92.208	Oreochromis_niloticus
ENSGACG00000007680	zgc:171482	100	89.224	ENSORLG00000007607	zgc:171482	100	89.224	Oryzias_latipes
ENSGACG00000007680	zgc:171482	100	87.069	ENSORLG00020003563	zgc:171482	100	87.069	Oryzias_latipes_hni
ENSGACG00000007680	zgc:171482	100	89.224	ENSORLG00015008552	zgc:171482	100	89.224	Oryzias_latipes_hsok
ENSGACG00000007680	zgc:171482	80	95.200	ENSOMEG00000003526	zgc:171482	88	95.200	Oryzias_melastigma
ENSGACG00000007680	zgc:171482	87	93.277	ENSPKIG00000015911	-	83	93.277	Paramormyrops_kingsleyae
ENSGACG00000007680	zgc:171482	80	90.909	ENSPKIG00000016244	zgc:171482	84	87.288	Paramormyrops_kingsleyae
ENSGACG00000007680	zgc:171482	99	87.448	ENSPMGG00000020230	zgc:171482	100	87.448	Periophthalmus_magnuspinnatus
ENSGACG00000007680	zgc:171482	99	88.703	ENSPFOG00000001974	zgc:171482	96	88.703	Poecilia_formosa
ENSGACG00000007680	zgc:171482	100	90.086	ENSPLAG00000003327	zgc:171482	100	90.086	Poecilia_latipinna
ENSGACG00000007680	zgc:171482	99	96.000	ENSPMEG00000004988	zgc:171482	100	84.979	Poecilia_mexicana
ENSGACG00000007680	zgc:171482	80	96.000	ENSPREG00000019241	zgc:171482	91	96.000	Poecilia_reticulata
ENSGACG00000007680	zgc:171482	80	95.200	ENSPNYG00000007773	zgc:171482	87	95.200	Pundamilia_nyererei
ENSGACG00000007680	zgc:171482	99	83.550	ENSPNAG00000007619	zgc:171482	97	84.681	Pygocentrus_nattereri
ENSGACG00000007680	zgc:171482	80	88.889	ENSSFOG00015016149	zgc:171482	94	88.889	Scleropages_formosus
ENSGACG00000007680	zgc:171482	80	89.076	ENSSFOG00015021238	zgc:171482	80	89.076	Scleropages_formosus
ENSGACG00000007680	zgc:171482	80	95.200	ENSSMAG00000002715	zgc:171482	80	95.200	Scophthalmus_maximus
ENSGACG00000007680	zgc:171482	80	90.511	ENSSDUG00000008773	zgc:171482	96	90.511	Seriola_dumerili
ENSGACG00000007680	zgc:171482	80	90.511	ENSSLDG00000019510	zgc:171482	96	90.511	Seriola_lalandi_dorsalis
ENSGACG00000007680	zgc:171482	80	94.444	ENSSPAG00000013724	zgc:171482	100	94.444	Stegastes_partitus
ENSGACG00000007680	zgc:171482	85	98.230	ENSTRUG00000005705	zgc:171482	71	98.230	Takifugu_rubripes
ENSGACG00000007680	zgc:171482	100	77.586	ENSTNIG00000008679	zgc:171482	100	77.586	Tetraodon_nigroviridis
ENSGACG00000007680	zgc:171482	84	60.140	ENSXETG00000013525	zmat4	83	62.406	Xenopus_tropicalis
ENSGACG00000007680	zgc:171482	100	86.777	ENSXMAG00000002641	zgc:171482	100	86.777	Xiphophorus_maculatus