EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000008140 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 3175 bases
Position: chrgroupVIII:9336459-9339633
Accession: ZDB-GENE-040426-1652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000010798	LSM	PF01423.22	9.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000010820	-	1297	-	ENSGACP00000010798	150 (aa)	-	G3NZM5

Gene Model

Click here to download ENSGACG00000008140's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000008140's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000008140	lsm4	51	32.468	ENSGACG00000002329	oscp1a	60	33.333
ENSGACG00000008140	lsm4	51	35.000	ENSGACG00000003827	si:ch73-14h10.2	82	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000008140	lsm4	59	98.864	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSGACG00000008140	lsm4	100	88.235	ENSAPOG00000005643	lsm4	100	87.582	Acanthochromis_polyacanthus
ENSGACG00000008140	lsm4	58	98.851	ENSAMEG00000011162	LSM4	64	97.872	Ailuropoda_melanoleuca
ENSGACG00000008140	lsm4	100	89.333	ENSAOCG00000006414	lsm4	100	88.667	Amphiprion_ocellaris
ENSGACG00000008140	lsm4	100	89.404	ENSAPEG00000006238	lsm4	100	88.742	Amphiprion_percula
ENSGACG00000008140	lsm4	100	88.312	ENSATEG00000016559	lsm4	100	87.013	Anabas_testudineus
ENSGACG00000008140	lsm4	59	98.864	ENSANAG00000034659	LSM4	68	97.895	Aotus_nancymaae
ENSGACG00000008140	lsm4	100	90.000	ENSACLG00000022738	lsm4	100	86.667	Astatotilapia_calliptera
ENSGACG00000008140	lsm4	100	85.333	ENSAMXG00000016932	lsm4	100	74.667	Astyanax_mexicanus
ENSGACG00000008140	lsm4	59	98.864	ENSBTAG00000008578	LSM4	68	97.895	Bos_taurus
ENSGACG00000008140	lsm4	55	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSGACG00000008140	lsm4	59	98.864	ENSCJAG00000014171	LSM4	68	97.895	Callithrix_jacchus
ENSGACG00000008140	lsm4	59	98.864	ENSCAFG00000014900	LSM4	62	97.895	Canis_familiaris
ENSGACG00000008140	lsm4	59	98.864	ENSCAFG00020012137	LSM4	68	97.895	Canis_lupus_dingo
ENSGACG00000008140	lsm4	58	98.851	ENSCHIG00000010928	LSM4	62	97.872	Capra_hircus
ENSGACG00000008140	lsm4	59	97.727	ENSTSYG00000030906	LSM4	68	96.842	Carlito_syrichta
ENSGACG00000008140	lsm4	59	97.727	ENSCAPG00000014140	LSM4	68	96.842	Cavia_aperea
ENSGACG00000008140	lsm4	59	97.727	ENSCPOG00000024117	LSM4	68	96.842	Cavia_porcellus
ENSGACG00000008140	lsm4	59	98.864	ENSCCAG00000036308	LSM4	68	97.895	Cebus_capucinus
ENSGACG00000008140	lsm4	59	98.864	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSGACG00000008140	lsm4	59	98.864	ENSCLAG00000010828	LSM4	68	97.895	Chinchilla_lanigera
ENSGACG00000008140	lsm4	59	98.864	ENSCSAG00000005370	LSM4	68	97.895	Chlorocebus_sabaeus
ENSGACG00000008140	lsm4	59	100.000	ENSCPBG00000012925	LSM4	69	98.947	Chrysemys_picta_bellii
ENSGACG00000008140	lsm4	57	93.023	ENSCING00000007519	-	73	92.473	Ciona_intestinalis
ENSGACG00000008140	lsm4	57	93.023	ENSCSAVG00000008596	-	74	92.473	Ciona_savignyi
ENSGACG00000008140	lsm4	59	98.864	ENSCANG00000043686	LSM4	97	72.464	Colobus_angolensis_palliatus
ENSGACG00000008140	lsm4	59	95.455	ENSCGRG00001014436	Lsm4	68	95.789	Cricetulus_griseus_chok1gshd
ENSGACG00000008140	lsm4	58	95.402	ENSCGRG00000009398	Lsm4	68	95.745	Cricetulus_griseus_crigri
ENSGACG00000008140	lsm4	100	78.000	ENSCSEG00000016127	lsm4	100	83.333	Cynoglossus_semilaevis
ENSGACG00000008140	lsm4	100	87.333	ENSCVAG00000010601	lsm4	100	84.667	Cyprinodon_variegatus
ENSGACG00000008140	lsm4	90	84.444	ENSCVAG00000021828	lsm4	98	82.963	Cyprinodon_variegatus
ENSGACG00000008140	lsm4	66	97.980	ENSDARG00000023852	lsm4	67	98.958	Danio_rerio
ENSGACG00000008140	lsm4	59	97.727	ENSDORG00000024225	Lsm4	68	96.842	Dipodomys_ordii
ENSGACG00000008140	lsm4	67	81.000	FBgn0032240	CG17768	58	86.667	Drosophila_melanogaster
ENSGACG00000008140	lsm4	50	93.333	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSGACG00000008140	lsm4	86	89.922	ENSELUG00000012821	lsm4	72	98.947	Esox_lucius
ENSGACG00000008140	lsm4	59	98.864	ENSFCAG00000040580	LSM4	68	97.895	Felis_catus
ENSGACG00000008140	lsm4	58	100.000	ENSFALG00000009478	LSM4	68	98.936	Ficedula_albicollis
ENSGACG00000008140	lsm4	58	98.851	ENSFDAG00000010124	LSM4	68	97.872	Fukomys_damarensis
ENSGACG00000008140	lsm4	99	80.921	ENSGMOG00000007729	lsm4	99	78.082	Gadus_morhua
ENSGACG00000008140	lsm4	59	100.000	ENSGALG00000003385	LSM4	69	98.947	Gallus_gallus
ENSGACG00000008140	lsm4	100	87.333	ENSGAFG00000004903	lsm4	97	80.000	Gambusia_affinis
ENSGACG00000008140	lsm4	59	100.000	ENSGAGG00000017812	LSM4	69	98.947	Gopherus_agassizii
ENSGACG00000008140	lsm4	59	98.864	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSGACG00000008140	lsm4	100	89.333	ENSHBUG00000008858	lsm4	80	86.000	Haplochromis_burtoni
ENSGACG00000008140	lsm4	87	80.000	ENSHGLG00000006568	LSM4	68	97.895	Heterocephalus_glaber_female
ENSGACG00000008140	lsm4	61	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSGACG00000008140	lsm4	100	87.333	ENSHCOG00000008819	lsm4	100	84.667	Hippocampus_comes
ENSGACG00000008140	lsm4	100	86.000	ENSIPUG00000005368	Lsm4	100	76.667	Ictalurus_punctatus
ENSGACG00000008140	lsm4	59	98.864	ENSSTOG00000016494	LSM4	68	97.895	Ictidomys_tridecemlineatus
ENSGACG00000008140	lsm4	59	96.591	ENSJJAG00000017420	Lsm4	68	96.842	Jaculus_jaculus
ENSGACG00000008140	lsm4	100	80.667	ENSKMAG00000005073	lsm4	100	83.333	Kryptolebias_marmoratus
ENSGACG00000008140	lsm4	100	89.404	ENSLBEG00000027930	lsm4	100	88.742	Labrus_bergylta
ENSGACG00000008140	lsm4	59	100.000	ENSLACG00000015861	LSM4	68	98.947	Latimeria_chalumnae
ENSGACG00000008140	lsm4	67	97.030	ENSLOCG00000002025	lsm4	100	82.667	Lepisosteus_oculatus
ENSGACG00000008140	lsm4	58	97.701	ENSLAFG00000017459	LSM4	68	96.809	Loxodonta_africana
ENSGACG00000008140	lsm4	59	98.864	ENSMFAG00000031194	LSM4	97	72.464	Macaca_fascicularis
ENSGACG00000008140	lsm4	59	98.864	ENSMMUG00000004405	LSM4	68	97.895	Macaca_mulatta
ENSGACG00000008140	lsm4	59	98.864	ENSMNEG00000042899	LSM4	97	72.464	Macaca_nemestrina
ENSGACG00000008140	lsm4	59	98.864	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSGACG00000008140	lsm4	100	88.667	ENSMAMG00000006190	lsm4	100	84.667	Mastacembelus_armatus
ENSGACG00000008140	lsm4	100	89.333	ENSMZEG00005016420	lsm4	100	86.000	Maylandia_zebra
ENSGACG00000008140	lsm4	86	86.047	ENSMGAG00000004976	LSM4	68	98.936	Meleagris_gallopavo
ENSGACG00000008140	lsm4	66	95.960	ENSMICG00000000222	LSM4	68	96.842	Microcebus_murinus
ENSGACG00000008140	lsm4	59	95.455	ENSMOCG00000020861	Lsm4	68	95.789	Microtus_ochrogaster
ENSGACG00000008140	lsm4	100	84.667	ENSMALG00000018159	lsm4	100	81.333	Monopterus_albus
ENSGACG00000008140	lsm4	59	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	68	95.789	Mus_caroli
ENSGACG00000008140	lsm4	59	95.455	ENSMUSG00000031848	Lsm4	92	89.474	Mus_musculus
ENSGACG00000008140	lsm4	59	95.455	MGP_PahariEiJ_G0021623	Lsm4	68	95.789	Mus_pahari
ENSGACG00000008140	lsm4	59	95.455	MGP_SPRETEiJ_G0032276	Lsm4	68	95.789	Mus_spretus
ENSGACG00000008140	lsm4	59	98.864	ENSMPUG00000015589	LSM4	68	97.895	Mustela_putorius_furo
ENSGACG00000008140	lsm4	58	98.851	ENSMLUG00000004010	LSM4	68	97.872	Myotis_lucifugus
ENSGACG00000008140	lsm4	59	95.455	ENSNGAG00000008644	Lsm4	68	95.789	Nannospalax_galili
ENSGACG00000008140	lsm4	65	98.980	ENSNBRG00000022150	lsm4	59	98.947	Neolamprologus_brichardi
ENSGACG00000008140	lsm4	51	97.403	ENSOPRG00000005575	LSM4	67	96.250	Ochotona_princeps
ENSGACG00000008140	lsm4	87	61.364	ENSODEG00000011712	-	92	61.364	Octodon_degus
ENSGACG00000008140	lsm4	59	98.864	ENSODEG00000020549	-	68	97.895	Octodon_degus
ENSGACG00000008140	lsm4	59	88.636	ENSODEG00000004519	-	69	87.368	Octodon_degus
ENSGACG00000008140	lsm4	100	90.000	ENSONIG00000012724	lsm4	100	86.667	Oreochromis_niloticus
ENSGACG00000008140	lsm4	58	94.505	ENSOANG00000007434	LSM4	84	93.878	Ornithorhynchus_anatinus
ENSGACG00000008140	lsm4	100	86.000	ENSORLG00000008391	lsm4	100	82.667	Oryzias_latipes
ENSGACG00000008140	lsm4	100	85.333	ENSORLG00020014829	lsm4	100	82.667	Oryzias_latipes_hni
ENSGACG00000008140	lsm4	100	84.667	ENSORLG00015010205	lsm4	100	82.000	Oryzias_latipes_hsok
ENSGACG00000008140	lsm4	100	85.333	ENSOMEG00000003606	lsm4	100	82.000	Oryzias_melastigma
ENSGACG00000008140	lsm4	65	95.918	ENSOGAG00000027992	LSM4	64	96.809	Otolemur_garnettii
ENSGACG00000008140	lsm4	58	98.851	ENSOARG00000012553	LSM4	65	97.872	Ovis_aries
ENSGACG00000008140	lsm4	59	98.864	ENSPPAG00000044045	-	68	97.895	Pan_paniscus
ENSGACG00000008140	lsm4	59	98.864	ENSPPRG00000018264	LSM4	68	97.895	Panthera_pardus
ENSGACG00000008140	lsm4	58	98.851	ENSPTIG00000006306	LSM4	68	97.872	Panthera_tigris_altaica
ENSGACG00000008140	lsm4	59	98.864	ENSPTRG00000031470	LSM4	68	97.895	Pan_troglodytes
ENSGACG00000008140	lsm4	59	98.864	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSGACG00000008140	lsm4	100	83.333	ENSPKIG00000006154	lsm4	100	84.000	Paramormyrops_kingsleyae
ENSGACG00000008140	lsm4	58	100.000	ENSPSIG00000012358	LSM4	69	98.936	Pelodiscus_sinensis
ENSGACG00000008140	lsm4	59	95.455	ENSPEMG00000001358	Lsm4	68	95.789	Peromyscus_maniculatus_bairdii
ENSGACG00000008140	lsm4	100	87.333	ENSPFOG00000000570	lsm4	76	83.333	Poecilia_formosa
ENSGACG00000008140	lsm4	100	88.667	ENSPLAG00000016267	lsm4	100	84.667	Poecilia_latipinna
ENSGACG00000008140	lsm4	100	86.667	ENSPMEG00000016378	lsm4	100	83.333	Poecilia_mexicana
ENSGACG00000008140	lsm4	100	86.000	ENSPREG00000011290	lsm4	76	84.000	Poecilia_reticulata
ENSGACG00000008140	lsm4	59	98.864	ENSPPYG00000009736	LSM4	68	97.895	Pongo_abelii
ENSGACG00000008140	lsm4	66	95.960	ENSPCOG00000019837	LSM4	68	96.842	Propithecus_coquereli
ENSGACG00000008140	lsm4	59	98.864	ENSPVAG00000015383	LSM4	68	97.895	Pteropus_vampyrus
ENSGACG00000008140	lsm4	100	89.333	ENSPNYG00000016794	lsm4	100	86.000	Pundamilia_nyererei
ENSGACG00000008140	lsm4	95	85.315	ENSPNAG00000016598	lsm4	100	77.622	Pygocentrus_nattereri
ENSGACG00000008140	lsm4	59	95.455	ENSRNOG00000019572	Lsm4	68	95.789	Rattus_norvegicus
ENSGACG00000008140	lsm4	59	98.864	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSGACG00000008140	lsm4	59	98.864	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSGACG00000008140	lsm4	55	40.860	YER112W	LSM4	56	39.423	Saccharomyces_cerevisiae
ENSGACG00000008140	lsm4	59	100.000	ENSSHAG00000011559	LSM4	68	98.947	Sarcophilus_harrisii
ENSGACG00000008140	lsm4	100	84.000	ENSSFOG00015021067	lsm4	100	84.000	Scleropages_formosus
ENSGACG00000008140	lsm4	100	82.667	ENSSMAG00000021020	lsm4	100	82.781	Scophthalmus_maximus
ENSGACG00000008140	lsm4	100	80.473	ENSSDUG00000009588	lsm4	100	79.882	Seriola_dumerili
ENSGACG00000008140	lsm4	100	80.000	ENSSLDG00000006827	lsm4	100	79.412	Seriola_lalandi_dorsalis
ENSGACG00000008140	lsm4	58	100.000	ENSSPUG00000010166	LSM4	61	98.936	Sphenodon_punctatus
ENSGACG00000008140	lsm4	100	87.582	ENSSPAG00000011615	lsm4	100	86.928	Stegastes_partitus
ENSGACG00000008140	lsm4	59	98.864	ENSSSCG00000034314	LSM4	68	97.895	Sus_scrofa
ENSGACG00000008140	lsm4	100	86.000	ENSTRUG00000021737	lsm4	100	84.000	Takifugu_rubripes
ENSGACG00000008140	lsm4	100	86.667	ENSTNIG00000010191	lsm4	100	84.667	Tetraodon_nigroviridis
ENSGACG00000008140	lsm4	59	98.864	ENSUAMG00000000665	LSM4	79	97.895	Ursus_americanus
ENSGACG00000008140	lsm4	59	98.864	ENSUMAG00000009013	LSM4	68	97.895	Ursus_maritimus
ENSGACG00000008140	lsm4	65	96.939	ENSXETG00000024933	lsm4	69	97.895	Xenopus_tropicalis
ENSGACG00000008140	lsm4	100	87.333	ENSXMAG00000026672	lsm4	76	83.333	Xiphophorus_maculatus