EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000008504 (Gene tree)
Gene ID: -
Gene Symbol: prpf8
Alias: id:ibd1257|ik:tdsubc_2a9|im:7141966|tdsubc_2a9|wu:fb37c02|wu:fb73e06|xx:tdsubc_2a9|zgc:56504
Full Name: pre-mRNA processing factor 8
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 13546 bases
Position: chrgroupI:7534359-7547904
Accession: ZDB-GENE-030131-577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000011283	RRM_4	PF10598.9	2.6e-48	1	1
ENSGACP00000011309	RRM_4	PF10598.9	2.6e-48	1	1
ENSGACP00000011278	RRM_4	PF10598.9	2.6e-48	1	1
ENSGACP00000011283	U5_2-snRNA_bdg	PF10597.9	6e-74	1	1
ENSGACP00000011309	U5_2-snRNA_bdg	PF10597.9	6.1e-74	1	1
ENSGACP00000011278	U5_2-snRNA_bdg	PF10597.9	6.1e-74	1	1
ENSGACP00000011309	PRO8NT	PF08082.11	2.9e-87	1	1
ENSGACP00000011283	PRO8NT	PF08082.11	2.9e-87	1	1
ENSGACP00000011278	PRO8NT	PF08082.11	2.9e-87	1	1
ENSGACP00000011283	U6-snRNA_bdg	PF10596.9	1.5e-89	1	1
ENSGACP00000011309	U6-snRNA_bdg	PF10596.9	1.5e-89	1	1
ENSGACP00000011278	U6-snRNA_bdg	PF10596.9	1.5e-89	1	1
ENSGACP00000011283	PROCN	PF08083.11	1.9e-235	1	1
ENSGACP00000011309	PROCN	PF08083.11	1.9e-235	1	1
ENSGACP00000011278	PROCN	PF08083.11	1.9e-235	1	1
ENSGACP00000011283	PRP8_domainIV	PF12134.8	3.6e-130	1	1
ENSGACP00000011309	PRP8_domainIV	PF12134.8	3.6e-130	1	1
ENSGACP00000011278	PRP8_domainIV	PF12134.8	3.6e-130	1	1
ENSGACP00000011283	PROCT	PF08084.11	2.3e-53	1	1
ENSGACP00000011309	PROCT	PF08084.11	2.3e-53	1	1
ENSGACP00000011278	PROCT	PF08084.11	2.4e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000011306	-	7409	-	ENSGACP00000011283	2334 (aa)	-	G3P110
ENSGACT00000011332	-	7445	-	ENSGACP00000011309	2343 (aa)	-	G3P136
ENSGACT00000011301	-	7439	-	ENSGACP00000011278	2344 (aa)	-	G3P105

Gene Model

Click here to download ENSGACG00000008504's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000008504's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000008504	prpf8	100	97.516	ENSG00000174231	PRPF8	100	97.516	Homo_sapiens
ENSGACG00000008504	prpf8	100	99.316	ENSAPOG00000010079	prpf8	100	99.316	Acanthochromis_polyacanthus
ENSGACG00000008504	prpf8	100	97.516	ENSAMEG00000007940	PRPF8	100	97.516	Ailuropoda_melanoleuca
ENSGACG00000008504	prpf8	100	97.147	ENSACIG00000018280	prpf8	100	97.282	Amphilophus_citrinellus
ENSGACG00000008504	prpf8	100	99.358	ENSAOCG00000010725	prpf8	100	99.358	Amphiprion_ocellaris
ENSGACG00000008504	prpf8	100	99.358	ENSAPEG00000014397	prpf8	100	99.358	Amphiprion_percula
ENSGACG00000008504	prpf8	100	98.546	ENSATEG00000010062	prpf8	100	98.546	Anabas_testudineus
ENSGACG00000008504	prpf8	96	98.043	ENSAPLG00000010357	PRPF8	100	98.043	Anas_platyrhynchos
ENSGACG00000008504	prpf8	83	95.385	ENSACAG00000014784	PRPF8	99	96.025	Anolis_carolinensis
ENSGACG00000008504	prpf8	100	97.516	ENSANAG00000032629	PRPF8	100	97.516	Aotus_nancymaae
ENSGACG00000008504	prpf8	100	98.464	ENSACLG00000020858	prpf8	100	98.596	Astatotilapia_calliptera
ENSGACG00000008504	prpf8	100	98.929	ENSAMXG00000020291	prpf8	100	98.929	Astyanax_mexicanus
ENSGACG00000008504	prpf8	100	97.516	ENSBTAG00000011488	PRPF8	100	97.516	Bos_taurus
ENSGACG00000008504	prpf8	99	86.575	WBGene00004187	prp-8	99	86.649	Caenorhabditis_elegans
ENSGACG00000008504	prpf8	100	97.516	ENSCJAG00000001911	PRPF8	100	97.516	Callithrix_jacchus
ENSGACG00000008504	prpf8	100	97.516	ENSCAFG00000019221	PRPF8	100	97.516	Canis_familiaris
ENSGACG00000008504	prpf8	96	97.992	ENSCAFG00020009943	PRPF8	100	97.992	Canis_lupus_dingo
ENSGACG00000008504	prpf8	100	97.516	ENSCHIG00000017499	PRPF8	100	97.516	Capra_hircus
ENSGACG00000008504	prpf8	100	97.516	ENSTSYG00000014120	PRPF8	100	97.516	Carlito_syrichta
ENSGACG00000008504	prpf8	96	95.768	ENSCAPG00000009459	PRPF8	99	95.768	Cavia_aperea
ENSGACG00000008504	prpf8	100	97.516	ENSCPOG00000010379	PRPF8	100	97.516	Cavia_porcellus
ENSGACG00000008504	prpf8	100	97.516	ENSCCAG00000031983	-	100	97.516	Cebus_capucinus
ENSGACG00000008504	prpf8	100	97.516	ENSCATG00000038595	PRPF8	100	97.516	Cercocebus_atys
ENSGACG00000008504	prpf8	100	97.516	ENSCLAG00000004388	PRPF8	100	97.516	Chinchilla_lanigera
ENSGACG00000008504	prpf8	100	97.516	ENSCSAG00000013929	PRPF8	100	97.516	Chlorocebus_sabaeus
ENSGACG00000008504	prpf8	81	97.333	ENSCHOG00000008590	PRPF8	88	97.333	Choloepus_hoffmanni
ENSGACG00000008504	prpf8	100	97.645	ENSCPBG00000020409	PRPF8	100	97.645	Chrysemys_picta_bellii
ENSGACG00000008504	prpf8	98	92.604	ENSCSAVG00000007825	-	100	91.151	Ciona_savignyi
ENSGACG00000008504	prpf8	100	97.516	ENSCANG00000043088	PRPF8	100	97.516	Colobus_angolensis_palliatus
ENSGACG00000008504	prpf8	74	99.409	ENSCGRG00000005129	Prpf8	100	99.409	Cricetulus_griseus_crigri
ENSGACG00000008504	prpf8	100	99.059	ENSCSEG00000007905	prpf8	100	99.146	Cynoglossus_semilaevis
ENSGACG00000008504	prpf8	100	98.634	ENSDARG00000026180	prpf8	100	98.676	Danio_rerio
ENSGACG00000008504	prpf8	93	97.652	ENSDNOG00000018471	PRPF8	99	97.652	Dasypus_novemcinctus
ENSGACG00000008504	prpf8	84	96.097	ENSDORG00000006185	Prpf8	96	96.097	Dipodomys_ordii
ENSGACG00000008504	prpf8	99	91.427	FBgn0033688	Prp8	97	91.883	Drosophila_melanogaster
ENSGACG00000008504	prpf8	100	92.248	ENSETEG00000017592	PRPF8	98	94.885	Echinops_telfairi
ENSGACG00000008504	prpf8	100	92.918	ENSEBUG00000006548	prpf8	99	93.422	Eptatretus_burgeri
ENSGACG00000008504	prpf8	100	97.516	ENSEASG00005009514	PRPF8	100	97.516	Equus_asinus_asinus
ENSGACG00000008504	prpf8	98	97.550	ENSECAG00000021318	PRPF8	100	98.022	Equus_caballus
ENSGACG00000008504	prpf8	67	98.519	ENSEEUG00000012120	-	67	98.519	Erinaceus_europaeus
ENSGACG00000008504	prpf8	98	97.552	ENSELUG00000007120	prpf8	99	97.552	Esox_lucius
ENSGACG00000008504	prpf8	100	97.516	ENSFCAG00000006297	PRPF8	100	97.516	Felis_catus
ENSGACG00000008504	prpf8	100	97.730	ENSFALG00000006628	PRPF8	100	97.730	Ficedula_albicollis
ENSGACG00000008504	prpf8	100	97.516	ENSFDAG00000004711	PRPF8	100	97.516	Fukomys_damarensis
ENSGACG00000008504	prpf8	100	98.506	ENSFHEG00000021084	prpf8	100	98.762	Fundulus_heteroclitus
ENSGACG00000008504	prpf8	100	96.743	ENSGMOG00000002028	prpf8	100	96.665	Gadus_morhua
ENSGACG00000008504	prpf8	100	97.730	ENSGALG00000002943	PRPF8	100	97.730	Gallus_gallus
ENSGACG00000008504	prpf8	100	98.339	ENSGAFG00000010337	prpf8	99	98.927	Gambusia_affinis
ENSGACG00000008504	prpf8	100	97.687	ENSGAGG00000008350	PRPF8	100	97.687	Gopherus_agassizii
ENSGACG00000008504	prpf8	100	97.516	ENSGGOG00000005516	PRPF8	100	97.516	Gorilla_gorilla
ENSGACG00000008504	prpf8	100	98.757	ENSHBUG00000016192	prpf8	100	98.757	Haplochromis_burtoni
ENSGACG00000008504	prpf8	100	97.516	ENSHGLG00000012029	PRPF8	100	97.516	Heterocephalus_glaber_female
ENSGACG00000008504	prpf8	100	97.516	ENSHGLG00100016494	PRPF8	100	97.516	Heterocephalus_glaber_male
ENSGACG00000008504	prpf8	100	98.803	ENSHCOG00000016414	prpf8	100	98.847	Hippocampus_comes
ENSGACG00000008504	prpf8	100	98.631	ENSIPUG00000023230	prpf8	100	98.631	Ictalurus_punctatus
ENSGACG00000008504	prpf8	100	97.516	ENSSTOG00000005128	PRPF8	100	97.516	Ictidomys_tridecemlineatus
ENSGACG00000008504	prpf8	100	95.375	ENSJJAG00000021159	Prpf8	100	95.375	Jaculus_jaculus
ENSGACG00000008504	prpf8	100	98.549	ENSKMAG00000016118	prpf8	100	98.719	Kryptolebias_marmoratus
ENSGACG00000008504	prpf8	100	99.230	ENSLBEG00000026903	prpf8	100	99.231	Labrus_bergylta
ENSGACG00000008504	prpf8	95	95.528	ENSLACG00000010479	PRPF8	99	98.261	Latimeria_chalumnae
ENSGACG00000008504	prpf8	100	98.082	ENSLOCG00000005409	prpf8	100	98.082	Lepisosteus_oculatus
ENSGACG00000008504	prpf8	100	97.516	ENSLAFG00000015445	PRPF8	100	97.516	Loxodonta_africana
ENSGACG00000008504	prpf8	100	97.516	ENSMFAG00000039995	PRPF8	100	97.516	Macaca_fascicularis
ENSGACG00000008504	prpf8	100	97.516	ENSMMUG00000004820	PRPF8	100	97.516	Macaca_mulatta
ENSGACG00000008504	prpf8	100	97.516	ENSMNEG00000035713	PRPF8	100	97.516	Macaca_nemestrina
ENSGACG00000008504	prpf8	100	97.516	ENSMLEG00000037937	PRPF8	100	97.516	Mandrillus_leucophaeus
ENSGACG00000008504	prpf8	100	99.230	ENSMAMG00000008919	prpf8	100	99.230	Mastacembelus_armatus
ENSGACG00000008504	prpf8	100	98.464	ENSMZEG00005015073	prpf8	100	98.596	Maylandia_zebra
ENSGACG00000008504	prpf8	100	97.730	ENSMGAG00000004769	PRPF8	100	97.730	Meleagris_gallopavo
ENSGACG00000008504	prpf8	100	97.516	ENSMICG00000010320	PRPF8	100	97.516	Microcebus_murinus
ENSGACG00000008504	prpf8	100	97.516	ENSMOCG00000016838	Prpf8	100	97.516	Microtus_ochrogaster
ENSGACG00000008504	prpf8	100	98.760	ENSMMOG00000011887	prpf8	100	98.760	Mola_mola
ENSGACG00000008504	prpf8	100	97.516	ENSMODG00000010480	PRPF8	100	97.516	Monodelphis_domestica
ENSGACG00000008504	prpf8	97	98.536	ENSMALG00000003558	prpf8	100	98.536	Monopterus_albus
ENSGACG00000008504	prpf8	100	97.473	MGP_CAROLIEiJ_G0016740	Prpf8	100	97.473	Mus_caroli
ENSGACG00000008504	prpf8	100	97.473	ENSMUSG00000020850	Prpf8	100	97.473	Mus_musculus
ENSGACG00000008504	prpf8	100	97.430	MGP_PahariEiJ_G0017877	Prpf8	100	97.430	Mus_pahari
ENSGACG00000008504	prpf8	100	97.473	MGP_SPRETEiJ_G0017583	Prpf8	100	97.473	Mus_spretus
ENSGACG00000008504	prpf8	100	97.516	ENSMPUG00000013227	PRPF8	100	97.516	Mustela_putorius_furo
ENSGACG00000008504	prpf8	100	97.391	ENSMLUG00000002666	PRPF8	100	97.391	Myotis_lucifugus
ENSGACG00000008504	prpf8	100	95.760	ENSNGAG00000005305	Prpf8	100	95.760	Nannospalax_galili
ENSGACG00000008504	prpf8	100	98.506	ENSNBRG00000013127	prpf8	100	98.638	Neolamprologus_brichardi
ENSGACG00000008504	prpf8	97	96.698	ENSNLEG00000000897	PRPF8	98	96.698	Nomascus_leucogenys
ENSGACG00000008504	prpf8	99	96.132	ENSMEUG00000015999	PRPF8	100	96.132	Notamacropus_eugenii
ENSGACG00000008504	prpf8	100	95.803	ENSOPRG00000003102	PRPF8	100	95.803	Ochotona_princeps
ENSGACG00000008504	prpf8	100	97.516	ENSODEG00000008468	PRPF8	100	97.516	Octodon_degus
ENSGACG00000008504	prpf8	100	98.506	ENSONIG00000008153	prpf8	100	98.596	Oreochromis_niloticus
ENSGACG00000008504	prpf8	82	99.252	ENSOANG00000004250	PRPF8	97	99.252	Ornithorhynchus_anatinus
ENSGACG00000008504	prpf8	100	97.516	ENSOCUG00000000081	PRPF8	100	97.516	Oryctolagus_cuniculus
ENSGACG00000008504	prpf8	100	98.677	ENSORLG00000008036	prpf8	100	98.598	Oryzias_latipes
ENSGACG00000008504	prpf8	100	98.635	ENSORLG00020021070	prpf8	100	98.556	Oryzias_latipes_hni
ENSGACG00000008504	prpf8	100	98.677	ENSORLG00015002340	prpf8	100	98.598	Oryzias_latipes_hsok
ENSGACG00000008504	prpf8	100	96.884	ENSOMEG00000016866	prpf8	100	96.899	Oryzias_melastigma
ENSGACG00000008504	prpf8	100	97.391	ENSOARG00000013312	PRPF8	100	97.391	Ovis_aries
ENSGACG00000008504	prpf8	100	97.516	ENSPPAG00000042753	PRPF8	100	97.516	Pan_paniscus
ENSGACG00000008504	prpf8	100	97.516	ENSPPRG00000008746	PRPF8	100	97.516	Panthera_pardus
ENSGACG00000008504	prpf8	100	97.430	ENSPTIG00000019200	PRPF8	100	97.430	Panthera_tigris_altaica
ENSGACG00000008504	prpf8	100	97.516	ENSPTRG00000039576	PRPF8	100	97.516	Pan_troglodytes
ENSGACG00000008504	prpf8	99	97.958	ENSPANG00000024607	PRPF8	98	97.958	Papio_anubis
ENSGACG00000008504	prpf8	100	98.335	ENSPKIG00000011201	prpf8	100	98.551	Paramormyrops_kingsleyae
ENSGACG00000008504	prpf8	100	97.602	ENSPSIG00000013393	PRPF8	100	97.602	Pelodiscus_sinensis
ENSGACG00000008504	prpf8	100	97.516	ENSPEMG00000021699	Prpf8	100	97.516	Peromyscus_maniculatus_bairdii
ENSGACG00000008504	prpf8	96	93.808	ENSPMAG00000005438	prpf8	100	93.853	Petromyzon_marinus
ENSGACG00000008504	prpf8	100	97.516	ENSPCIG00000022603	PRPF8	100	97.992	Phascolarctos_cinereus
ENSGACG00000008504	prpf8	100	98.378	ENSPFOG00000007005	prpf8	100	98.176	Poecilia_formosa
ENSGACG00000008504	prpf8	100	97.386	ENSPLAG00000020777	prpf8	100	97.386	Poecilia_latipinna
ENSGACG00000008504	prpf8	100	98.378	ENSPMEG00000004051	prpf8	100	98.176	Poecilia_mexicana
ENSGACG00000008504	prpf8	100	98.972	ENSPREG00000021902	prpf8	100	98.972	Poecilia_reticulata
ENSGACG00000008504	prpf8	100	97.516	ENSPPYG00000007777	PRPF8	100	97.516	Pongo_abelii
ENSGACG00000008504	prpf8	90	96.782	ENSPCAG00000008938	PRPF8	90	96.782	Procavia_capensis
ENSGACG00000008504	prpf8	100	97.516	ENSPCOG00000015182	PRPF8	100	97.516	Propithecus_coquereli
ENSGACG00000008504	prpf8	93	98.448	ENSPVAG00000002134	PRPF8	93	98.448	Pteropus_vampyrus
ENSGACG00000008504	prpf8	100	98.757	ENSPNYG00000016356	prpf8	100	98.757	Pundamilia_nyererei
ENSGACG00000008504	prpf8	100	98.888	ENSPNAG00000009247	prpf8	100	98.888	Pygocentrus_nattereri
ENSGACG00000008504	prpf8	100	97.473	ENSRNOG00000003495	Prpf8	100	97.473	Rattus_norvegicus
ENSGACG00000008504	prpf8	100	97.516	ENSRBIG00000031219	PRPF8	100	97.546	Rhinopithecus_bieti
ENSGACG00000008504	prpf8	100	97.516	ENSRROG00000038014	PRPF8	100	97.546	Rhinopithecus_roxellana
ENSGACG00000008504	prpf8	99	62.516	YHR165C	PRP8	95	62.602	Saccharomyces_cerevisiae
ENSGACG00000008504	prpf8	100	97.516	ENSSBOG00000029717	PRPF8	100	97.516	Saimiri_boliviensis_boliviensis
ENSGACG00000008504	prpf8	100	97.473	ENSSHAG00000006167	PRPF8	100	97.473	Sarcophilus_harrisii
ENSGACG00000008504	prpf8	100	98.377	ENSSFOG00015013905	prpf8	100	98.506	Scleropages_formosus
ENSGACG00000008504	prpf8	100	99.187	ENSSMAG00000017736	prpf8	100	99.187	Scophthalmus_maximus
ENSGACG00000008504	prpf8	100	99.358	ENSSDUG00000003029	prpf8	100	99.358	Seriola_dumerili
ENSGACG00000008504	prpf8	68	99.875	ENSSLDG00000017096	prpf8	100	99.875	Seriola_lalandi_dorsalis
ENSGACG00000008504	prpf8	87	94.481	ENSSARG00000002892	PRPF8	87	94.481	Sorex_araneus
ENSGACG00000008504	prpf8	100	97.559	ENSSPUG00000007463	PRPF8	100	97.559	Sphenodon_punctatus
ENSGACG00000008504	prpf8	100	98.717	ENSSPAG00000015639	prpf8	100	98.717	Stegastes_partitus
ENSGACG00000008504	prpf8	100	97.516	ENSSSCG00000017817	PRPF8	100	97.516	Sus_scrofa
ENSGACG00000008504	prpf8	100	97.730	ENSTGUG00000005648	-	100	97.730	Taeniopygia_guttata
ENSGACG00000008504	prpf8	52	98.604	ENSTGUG00000015597	-	95	98.604	Taeniopygia_guttata
ENSGACG00000008504	prpf8	100	98.931	ENSTRUG00000015906	prpf8	100	98.933	Takifugu_rubripes
ENSGACG00000008504	prpf8	95	99.642	ENSTNIG00000003460	prpf8	99	99.642	Tetraodon_nigroviridis
ENSGACG00000008504	prpf8	93	98.775	ENSTBEG00000006431	PRPF8	93	98.775	Tupaia_belangeri
ENSGACG00000008504	prpf8	100	96.916	ENSTTRG00000006869	PRPF8	100	96.916	Tursiops_truncatus
ENSGACG00000008504	prpf8	54	96.187	ENSUAMG00000015644	-	96	96.187	Ursus_americanus
ENSGACG00000008504	prpf8	100	97.259	ENSUMAG00000009385	PRPF8	100	97.259	Ursus_maritimus
ENSGACG00000008504	prpf8	71	97.931	ENSVPAG00000006063	-	71	97.931	Vicugna_pacos
ENSGACG00000008504	prpf8	100	97.516	ENSVVUG00000021695	PRPF8	99	97.516	Vulpes_vulpes
ENSGACG00000008504	prpf8	100	97.560	ENSXETG00000022259	prpf8	100	97.560	Xenopus_tropicalis
ENSGACG00000008504	prpf8	100	98.676	ENSXCOG00000012775	prpf8	100	98.890	Xiphophorus_couchianus
ENSGACG00000008504	prpf8	100	98.718	ENSXMAG00000008505	prpf8	100	98.933	Xiphophorus_maculatus