EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000008579 (Gene tree)
Gene ID: -
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 12583 bases
Position: chrgroupXVI:17242823-17255405
Accession: ZDB-GENE-030131-3406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000011349	Rif1_N	PF12231.8	1.1e-75	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000011372	-	7078	-	ENSGACP00000011349	2249 (aa)	-	G3P176

Gene Model

Click here to download ENSGACG00000008579's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000008579's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000008579	rif1	66	54.800	ENSG00000080345	RIF1	97	52.927	Homo_sapiens
ENSGACG00000008579	rif1	65	55.328	ENSAMEG00000008461	RIF1	59	55.833	Ailuropoda_melanoleuca
ENSGACG00000008579	rif1	93	71.025	ENSACIG00000017765	rif1	94	70.632	Amphilophus_citrinellus
ENSGACG00000008579	rif1	73	66.306	ENSAOCG00000017231	rif1	67	65.808	Amphiprion_ocellaris
ENSGACG00000008579	rif1	63	54.118	ENSAPLG00000007092	RIF1	65	55.372	Anas_platyrhynchos
ENSGACG00000008579	rif1	64	53.750	ENSACAG00000003714	RIF1	61	54.274	Anolis_carolinensis
ENSGACG00000008579	rif1	66	54.400	ENSANAG00000024840	RIF1	60	54.878	Aotus_nancymaae
ENSGACG00000008579	rif1	59	55.200	ENSBTAG00000021020	RIF1	55	59.542	Bos_taurus
ENSGACG00000008579	rif1	65	54.941	ENSCJAG00000003138	RIF1	60	55.691	Callithrix_jacchus
ENSGACG00000008579	rif1	66	53.815	ENSCAFG00000005670	RIF1	57	54.286	Canis_familiaris
ENSGACG00000008579	rif1	66	53.815	ENSCAFG00020016401	RIF1	60	54.286	Canis_lupus_dingo
ENSGACG00000008579	rif1	68	55.600	ENSCHIG00000020327	RIF1	60	56.098	Capra_hircus
ENSGACG00000008579	rif1	65	55.020	ENSTSYG00000008861	RIF1	59	55.510	Carlito_syrichta
ENSGACG00000008579	rif1	54	47.581	ENSCAPG00000008957	RIF1	59	46.939	Cavia_aperea
ENSGACG00000008579	rif1	63	54.032	ENSCPOG00000037898	RIF1	60	53.469	Cavia_porcellus
ENSGACG00000008579	rif1	66	54.800	ENSCCAG00000024760	RIF1	59	55.285	Cebus_capucinus
ENSGACG00000008579	rif1	66	55.600	ENSCATG00000033353	RIF1	59	56.098	Cercocebus_atys
ENSGACG00000008579	rif1	61	53.659	ENSCLAG00000001517	RIF1	59	53.469	Chinchilla_lanigera
ENSGACG00000008579	rif1	66	55.200	ENSCSAG00000016089	RIF1	59	55.691	Chlorocebus_sabaeus
ENSGACG00000008579	rif1	63	53.383	ENSCHOG00000007187	RIF1	56	54.878	Choloepus_hoffmanni
ENSGACG00000008579	rif1	66	55.159	ENSCPBG00000025885	RIF1	65	56.735	Chrysemys_picta_bellii
ENSGACG00000008579	rif1	69	54.618	ENSCANG00000028962	RIF1	61	54.626	Colobus_angolensis_palliatus
ENSGACG00000008579	rif1	70	50.988	ENSCGRG00001024589	Rif1	60	52.479	Cricetulus_griseus_chok1gshd
ENSGACG00000008579	rif1	69	50.988	ENSCGRG00000010713	Rif1	61	52.479	Cricetulus_griseus_crigri
ENSGACG00000008579	rif1	79	56.919	ENSCSEG00000003945	rif1	78	56.486	Cynoglossus_semilaevis
ENSGACG00000008579	rif1	79	58.101	ENSCVAG00000022479	rif1	77	56.370	Cyprinodon_variegatus
ENSGACG00000008579	rif1	75	61.538	ENSDARG00000062650	rif1	68	61.538	Danio_rerio
ENSGACG00000008579	rif1	66	52.632	ENSDNOG00000011194	RIF1	57	54.472	Dasypus_novemcinctus
ENSGACG00000008579	rif1	64	53.509	ENSETEG00000012421	RIF1	59	53.304	Echinops_telfairi
ENSGACG00000008579	rif1	53	67.763	ENSEASG00005023434	RIF1	52	67.541	Equus_asinus_asinus
ENSGACG00000008579	rif1	65	56.098	ENSECAG00000012679	RIF1	57	59.105	Equus_caballus
ENSGACG00000008579	rif1	70	65.428	ENSELUG00000006826	rif1	58	71.186	Esox_lucius
ENSGACG00000008579	rif1	66	54.618	ENSFCAG00000029742	RIF1	59	55.102	Felis_catus
ENSGACG00000008579	rif1	59	54.918	ENSFALG00000013874	RIF1	62	57.143	Ficedula_albicollis
ENSGACG00000008579	rif1	64	53.226	ENSFDAG00000006538	RIF1	59	53.469	Fukomys_damarensis
ENSGACG00000008579	rif1	84	57.492	ENSFHEG00000013721	rif1	94	55.829	Fundulus_heteroclitus
ENSGACG00000008579	rif1	70	66.667	ENSGMOG00000003517	rif1	99	66.412	Gadus_morhua
ENSGACG00000008579	rif1	62	55.814	ENSGALG00000012484	RIF1	62	57.438	Gallus_gallus
ENSGACG00000008579	rif1	96	74.334	ENSGAFG00000017196	rif1	61	74.352	Gambusia_affinis
ENSGACG00000008579	rif1	65	55.691	ENSGAGG00000012595	RIF1	64	56.327	Gopherus_agassizii
ENSGACG00000008579	rif1	99	73.643	ENSHBUG00000007125	rif1	95	78.541	Haplochromis_burtoni
ENSGACG00000008579	rif1	63	49.474	ENSHGLG00100009807	RIF1	61	49.674	Heterocephalus_glaber_male
ENSGACG00000008579	rif1	77	63.084	ENSHCOG00000015943	rif1	63	73.617	Hippocampus_comes
ENSGACG00000008579	rif1	63	57.153	ENSIPUG00000021703	rif1	50	62.815	Ictalurus_punctatus
ENSGACG00000008579	rif1	65	53.279	ENSSTOG00000020712	RIF1	59	54.583	Ictidomys_tridecemlineatus
ENSGACG00000008579	rif1	66	49.430	ENSJJAG00000023000	Rif1	61	50.000	Jaculus_jaculus
ENSGACG00000008579	rif1	100	55.286	ENSKMAG00000002852	rif1	94	55.073	Kryptolebias_marmoratus
ENSGACG00000008579	rif1	91	80.252	ENSLBEG00000023196	rif1	75	80.085	Labrus_bergylta
ENSGACG00000008579	rif1	66	53.465	ENSLACG00000005425	RIF1	62	57.025	Latimeria_chalumnae
ENSGACG00000008579	rif1	83	58.065	ENSLOCG00000002657	rif1	85	58.781	Lepisosteus_oculatus
ENSGACG00000008579	rif1	66	54.251	ENSLAFG00000009796	RIF1	60	54.065	Loxodonta_africana
ENSGACG00000008579	rif1	66	54.800	ENSMFAG00000032233	RIF1	59	55.285	Macaca_fascicularis
ENSGACG00000008579	rif1	66	54.800	ENSMMUG00000008611	RIF1	59	55.285	Macaca_mulatta
ENSGACG00000008579	rif1	66	54.800	ENSMNEG00000031616	RIF1	59	55.285	Macaca_nemestrina
ENSGACG00000008579	rif1	66	54.800	ENSMLEG00000042945	RIF1	59	55.285	Mandrillus_leucophaeus
ENSGACG00000008579	rif1	74	75.102	ENSMAMG00000001745	rif1	70	77.021	Mastacembelus_armatus
ENSGACG00000008579	rif1	95	72.034	ENSMZEG00005020920	rif1	55	72.122	Maylandia_zebra
ENSGACG00000008579	rif1	63	56.098	ENSMGAG00000012732	RIF1	64	56.198	Meleagris_gallopavo
ENSGACG00000008579	rif1	61	63.510	ENSMAUG00000013158	Rif1	57	64.881	Mesocricetus_auratus
ENSGACG00000008579	rif1	59	54.400	ENSMICG00000046127	RIF1	60	54.878	Microcebus_murinus
ENSGACG00000008579	rif1	65	54.825	ENSMOCG00000009381	Rif1	60	54.825	Microtus_ochrogaster
ENSGACG00000008579	rif1	88	72.996	ENSMMOG00000006519	rif1	74	72.766	Mola_mola
ENSGACG00000008579	rif1	64	56.769	ENSMODG00000003703	RIF1	61	56.769	Monodelphis_domestica
ENSGACG00000008579	rif1	74	70.281	ENSMALG00000016759	rif1	79	71.967	Monopterus_albus
ENSGACG00000008579	rif1	66	51.600	MGP_CAROLIEiJ_G0023555	Rif1	60	54.222	Mus_caroli
ENSGACG00000008579	rif1	60	52.100	ENSMUSG00000036202	Rif1	60	53.540	Mus_musculus
ENSGACG00000008579	rif1	66	54.386	MGP_PahariEiJ_G0025006	Rif1	59	55.111	Mus_pahari
ENSGACG00000008579	rif1	66	51.200	MGP_SPRETEiJ_G0024476	Rif1	60	53.778	Mus_spretus
ENSGACG00000008579	rif1	65	54.918	ENSMPUG00000000371	RIF1	59	55.417	Mustela_putorius_furo
ENSGACG00000008579	rif1	59	52.610	ENSMLUG00000003376	RIF1	56	53.061	Myotis_lucifugus
ENSGACG00000008579	rif1	55	48.265	ENSNGAG00000009268	Rif1	51	49.162	Nannospalax_galili
ENSGACG00000008579	rif1	87	68.494	ENSNBRG00000014257	rif1	93	78.539	Neolamprologus_brichardi
ENSGACG00000008579	rif1	66	52.033	ENSNLEG00000010955	RIF1	58	52.500	Nomascus_leucogenys
ENSGACG00000008579	rif1	64	52.610	ENSODEG00000003950	RIF1	60	53.061	Octodon_degus
ENSGACG00000008579	rif1	99	58.912	ENSONIG00000013657	rif1	92	79.070	Oreochromis_niloticus
ENSGACG00000008579	rif1	54	53.649	ENSOANG00000006078	-	52	53.649	Ornithorhynchus_anatinus
ENSGACG00000008579	rif1	65	55.870	ENSOCUG00000017435	RIF1	59	55.691	Oryctolagus_cuniculus
ENSGACG00000008579	rif1	67	54.839	ENSOGAG00000006141	RIF1	60	55.102	Otolemur_garnettii
ENSGACG00000008579	rif1	68	55.600	ENSOARG00000008930	RIF1	59	56.098	Ovis_aries
ENSGACG00000008579	rif1	66	54.800	ENSPPAG00000023754	RIF1	59	55.285	Pan_paniscus
ENSGACG00000008579	rif1	66	54.618	ENSPPRG00000003618	RIF1	59	55.102	Panthera_pardus
ENSGACG00000008579	rif1	66	54.618	ENSPTIG00000020652	RIF1	59	55.102	Panthera_tigris_altaica
ENSGACG00000008579	rif1	66	54.800	ENSPTRG00000012534	RIF1	59	55.285	Pan_troglodytes
ENSGACG00000008579	rif1	66	54.800	ENSPANG00000008525	RIF1	60	55.285	Papio_anubis
ENSGACG00000008579	rif1	63	54.589	ENSPKIG00000004267	rif1	62	54.290	Paramormyrops_kingsleyae
ENSGACG00000008579	rif1	77	63.860	ENSPMGG00000016141	rif1	84	71.250	Periophthalmus_magnuspinnatus
ENSGACG00000008579	rif1	64	50.800	ENSPEMG00000000446	Rif1	60	53.947	Peromyscus_maniculatus_bairdii
ENSGACG00000008579	rif1	65	54.393	ENSPCIG00000009185	RIF1	60	57.798	Phascolarctos_cinereus
ENSGACG00000008579	rif1	87	74.684	ENSPLAG00000017945	rif1	91	74.576	Poecilia_latipinna
ENSGACG00000008579	rif1	83	73.478	ENSPREG00000018052	rif1	82	83.146	Poecilia_reticulata
ENSGACG00000008579	rif1	66	54.800	ENSPPYG00000012846	RIF1	59	55.285	Pongo_abelii
ENSGACG00000008579	rif1	66	54.800	ENSPCOG00000027888	RIF1	60	55.285	Propithecus_coquereli
ENSGACG00000008579	rif1	60	58.740	ENSPVAG00000014276	RIF1	56	58.824	Pteropus_vampyrus
ENSGACG00000008579	rif1	94	76.829	ENSPNYG00000012940	rif1	90	78.298	Pundamilia_nyererei
ENSGACG00000008579	rif1	74	66.667	ENSPNAG00000016685	rif1	66	70.464	Pygocentrus_nattereri
ENSGACG00000008579	rif1	65	54.222	ENSRNOG00000054901	Rif1	59	54.667	Rattus_norvegicus
ENSGACG00000008579	rif1	65	54.800	ENSRBIG00000003704	RIF1	59	55.285	Rhinopithecus_bieti
ENSGACG00000008579	rif1	66	54.800	ENSRROG00000028206	RIF1	59	55.285	Rhinopithecus_roxellana
ENSGACG00000008579	rif1	62	54.800	ENSSBOG00000029530	RIF1	58	55.285	Saimiri_boliviensis_boliviensis
ENSGACG00000008579	rif1	66	52.510	ENSSHAG00000018552	RIF1	60	57.143	Sarcophilus_harrisii
ENSGACG00000008579	rif1	74	66.803	ENSSFOG00015021539	rif1	73	66.667	Scleropages_formosus
ENSGACG00000008579	rif1	95	79.661	ENSSMAG00000011704	rif1	89	79.574	Scophthalmus_maximus
ENSGACG00000008579	rif1	99	59.392	ENSSDUG00000015632	rif1	73	80.851	Seriola_dumerili
ENSGACG00000008579	rif1	63	54.118	ENSSPUG00000003062	RIF1	63	56.612	Sphenodon_punctatus
ENSGACG00000008579	rif1	64	76.986	ENSSPAG00000018359	rif1	92	76.858	Stegastes_partitus
ENSGACG00000008579	rif1	65	54.618	ENSSSCG00000016395	RIF1	59	55.510	Sus_scrofa
ENSGACG00000008579	rif1	90	77.119	ENSTRUG00000015808	rif1	87	77.021	Takifugu_rubripes
ENSGACG00000008579	rif1	77	77.311	ENSTNIG00000011538	rif1	76	77.447	Tetraodon_nigroviridis
ENSGACG00000008579	rif1	62	73.913	ENSTBEG00000016082	RIF1	53	73.913	Tupaia_belangeri
ENSGACG00000008579	rif1	66	53.160	ENSTTRG00000011190	RIF1	59	55.691	Tursiops_truncatus
ENSGACG00000008579	rif1	55	55.328	ENSUAMG00000026385	RIF1	55	55.833	Ursus_americanus
ENSGACG00000008579	rif1	65	55.328	ENSUMAG00000000337	RIF1	59	55.833	Ursus_maritimus
ENSGACG00000008579	rif1	69	54.217	ENSVPAG00000002162	RIF1	59	54.694	Vicugna_pacos
ENSGACG00000008579	rif1	65	54.472	ENSVVUG00000011293	RIF1	60	54.286	Vulpes_vulpes
ENSGACG00000008579	rif1	65	51.550	ENSXETG00000004530	rif1	61	58.140	Xenopus_tropicalis
ENSGACG00000008579	rif1	86	64.126	ENSXMAG00000000506	rif1	96	53.592	Xiphophorus_maculatus