EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000008703 (Gene tree)
Gene ID: -
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 10080 bases
Position: chrgroupX:13121536-13131615
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000011604	CPSF_A	PF03178.15	6e-90	1	1
ENSGACP00000011596	CPSF_A	PF03178.15	1.3e-89	1	1
ENSGACP00000011555	CPSF_A	PF03178.15	1.2e-88	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000011619	-	4498	-	ENSGACP00000011596	1449 (aa)	-	G3P1X3
ENSGACT00000011627	-	4619	-	ENSGACP00000011604	1452 (aa)	-	G3P1Y1
ENSGACT00000011578	-	4809	-	ENSGACP00000011555	1000 (aa)	-	G3P1T2

Gene Model

Click here to download ENSGACG00000008703's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000008703's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000008703	cpsf1	100	78.611	ENSG00000071894	CPSF1	100	78.748	Homo_sapiens
ENSGACG00000008703	cpsf1	100	89.700	ENSAPOG00000019621	cpsf1	100	90.142	Acanthochromis_polyacanthus
ENSGACG00000008703	cpsf1	97	77.495	ENSAMEG00000005557	CPSF1	99	77.969	Ailuropoda_melanoleuca
ENSGACG00000008703	cpsf1	100	88.033	ENSACIG00000006112	cpsf1	100	88.652	Amphilophus_citrinellus
ENSGACG00000008703	cpsf1	100	90.055	ENSAOCG00000007120	cpsf1	100	90.000	Amphiprion_ocellaris
ENSGACG00000008703	cpsf1	100	91.015	ENSAPEG00000005755	cpsf1	100	90.959	Amphiprion_percula
ENSGACG00000008703	cpsf1	100	89.400	ENSATEG00000011097	cpsf1	100	89.449	Anabas_testudineus
ENSGACG00000008703	cpsf1	93	74.148	ENSACAG00000009655	CPSF1	100	74.222	Anolis_carolinensis
ENSGACG00000008703	cpsf1	100	78.532	ENSANAG00000036514	CPSF1	100	78.655	Aotus_nancymaae
ENSGACG00000008703	cpsf1	100	88.000	ENSACLG00000012231	cpsf1	99	88.936	Astatotilapia_calliptera
ENSGACG00000008703	cpsf1	100	80.358	ENSAMXG00000008485	cpsf1	100	80.261	Astyanax_mexicanus
ENSGACG00000008703	cpsf1	100	77.245	ENSBTAG00000008355	CPSF1	100	78.152	Bos_taurus
ENSGACG00000008703	cpsf1	100	32.370	WBGene00022301	cpsf-1	100	40.563	Caenorhabditis_elegans
ENSGACG00000008703	cpsf1	100	78.738	ENSCJAG00000021421	CPSF1	100	78.655	Callithrix_jacchus
ENSGACG00000008703	cpsf1	100	76.000	ENSCAFG00000001600	CPSF1	100	78.731	Canis_familiaris
ENSGACG00000008703	cpsf1	100	78.493	ENSCAFG00020020821	CPSF1	100	78.630	Canis_lupus_dingo
ENSGACG00000008703	cpsf1	100	74.811	ENSCHIG00000015833	CPSF1	100	74.672	Capra_hircus
ENSGACG00000008703	cpsf1	100	78.944	ENSTSYG00000028560	CPSF1	100	78.955	Carlito_syrichta
ENSGACG00000008703	cpsf1	100	75.500	ENSCAPG00000014921	CPSF1	99	77.833	Cavia_aperea
ENSGACG00000008703	cpsf1	100	77.304	ENSCPOG00000011448	CPSF1	100	77.310	Cavia_porcellus
ENSGACG00000008703	cpsf1	100	78.875	ENSCCAG00000037658	CPSF1	100	79.358	Cebus_capucinus
ENSGACG00000008703	cpsf1	100	78.404	ENSCATG00000037234	CPSF1	100	78.704	Cercocebus_atys
ENSGACG00000008703	cpsf1	100	78.802	ENSCLAG00000012166	CPSF1	100	78.813	Chinchilla_lanigera
ENSGACG00000008703	cpsf1	100	78.680	ENSCSAG00000008502	CPSF1	100	78.611	Chlorocebus_sabaeus
ENSGACG00000008703	cpsf1	99	80.195	ENSCPBG00000018910	CPSF1	96	80.195	Chrysemys_picta_bellii
ENSGACG00000008703	cpsf1	96	48.500	ENSCING00000000514	-	100	48.396	Ciona_intestinalis
ENSGACG00000008703	cpsf1	99	48.354	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSGACG00000008703	cpsf1	98	76.087	ENSCANG00000032760	CPSF1	100	79.167	Colobus_angolensis_palliatus
ENSGACG00000008703	cpsf1	100	78.395	ENSCGRG00001016344	Cpsf1	100	78.404	Cricetulus_griseus_chok1gshd
ENSGACG00000008703	cpsf1	100	76.818	ENSCGRG00000003118	Cpsf1	100	76.823	Cricetulus_griseus_crigri
ENSGACG00000008703	cpsf1	100	87.923	ENSCSEG00000013464	cpsf1	100	87.741	Cynoglossus_semilaevis
ENSGACG00000008703	cpsf1	100	83.300	ENSCVAG00000014059	cpsf1	100	81.019	Cyprinodon_variegatus
ENSGACG00000008703	cpsf1	100	87.019	ENSDARG00000034178	cpsf1	100	87.157	Danio_rerio
ENSGACG00000008703	cpsf1	57	81.792	ENSDNOG00000043654	CPSF1	94	81.503	Dasypus_novemcinctus
ENSGACG00000008703	cpsf1	97	78.465	ENSDORG00000006278	Cpsf1	99	78.384	Dipodomys_ordii
ENSGACG00000008703	cpsf1	100	44.061	FBgn0024698	Cpsf160	100	44.098	Drosophila_melanogaster
ENSGACG00000008703	cpsf1	80	82.550	ENSETEG00000006022	CPSF1	83	82.550	Echinops_telfairi
ENSGACG00000008703	cpsf1	100	78.562	ENSEASG00005010774	CPSF1	100	78.709	Equus_asinus_asinus
ENSGACG00000008703	cpsf1	100	78.425	ENSECAG00000022209	CPSF1	100	78.640	Equus_caballus
ENSGACG00000008703	cpsf1	100	78.596	ENSEEUG00000000471	CPSF1	100	78.458	Erinaceus_europaeus
ENSGACG00000008703	cpsf1	100	85.888	ENSELUG00000012271	cpsf1	100	86.254	Esox_lucius
ENSGACG00000008703	cpsf1	100	79.009	ENSFDAG00000016060	CPSF1	100	79.020	Fukomys_damarensis
ENSGACG00000008703	cpsf1	100	88.577	ENSFHEG00000016801	cpsf1	100	88.759	Fundulus_heteroclitus
ENSGACG00000008703	cpsf1	100	87.887	ENSGMOG00000000796	cpsf1	100	88.094	Gadus_morhua
ENSGACG00000008703	cpsf1	99	85.426	ENSGAFG00000018890	cpsf1	100	87.205	Gambusia_affinis
ENSGACG00000008703	cpsf1	100	77.213	ENSGAGG00000004276	CPSF1	98	81.115	Gopherus_agassizii
ENSGACG00000008703	cpsf1	100	78.527	ENSGGOG00000016185	CPSF1	100	78.704	Gorilla_gorilla
ENSGACG00000008703	cpsf1	100	90.062	ENSHBUG00000018900	cpsf1	100	90.152	Haplochromis_burtoni
ENSGACG00000008703	cpsf1	100	78.871	ENSHGLG00000016139	CPSF1	100	78.882	Heterocephalus_glaber_female
ENSGACG00000008703	cpsf1	100	78.802	ENSHGLG00100009750	CPSF1	100	78.813	Heterocephalus_glaber_male
ENSGACG00000008703	cpsf1	100	86.370	ENSHCOG00000018509	cpsf1	100	86.505	Hippocampus_comes
ENSGACG00000008703	cpsf1	100	83.504	ENSIPUG00000011259	cpsf1	100	83.573	Ictalurus_punctatus
ENSGACG00000008703	cpsf1	100	75.274	ENSSTOG00000009957	CPSF1	99	78.249	Ictidomys_tridecemlineatus
ENSGACG00000008703	cpsf1	100	78.748	ENSJJAG00000023002	Cpsf1	100	78.759	Jaculus_jaculus
ENSGACG00000008703	cpsf1	91	92.790	ENSKMAG00000001940	cpsf1	99	92.790	Kryptolebias_marmoratus
ENSGACG00000008703	cpsf1	100	89.271	ENSLBEG00000003601	cpsf1	100	89.581	Labrus_bergylta
ENSGACG00000008703	cpsf1	88	76.822	ENSLACG00000000233	CPSF1	92	76.703	Latimeria_chalumnae
ENSGACG00000008703	cpsf1	100	82.037	ENSLOCG00000008484	cpsf1	100	82.466	Lepisosteus_oculatus
ENSGACG00000008703	cpsf1	100	75.800	ENSLAFG00000022601	CPSF1	100	78.637	Loxodonta_africana
ENSGACG00000008703	cpsf1	100	78.404	ENSMFAG00000037013	CPSF1	100	78.704	Macaca_fascicularis
ENSGACG00000008703	cpsf1	100	78.404	ENSMMUG00000007380	CPSF1	100	78.704	Macaca_mulatta
ENSGACG00000008703	cpsf1	97	78.846	ENSMNEG00000043564	CPSF1	100	78.704	Macaca_nemestrina
ENSGACG00000008703	cpsf1	100	78.404	ENSMLEG00000043010	CPSF1	100	78.704	Mandrillus_leucophaeus
ENSGACG00000008703	cpsf1	100	89.534	ENSMAMG00000003803	cpsf1	100	89.602	Mastacembelus_armatus
ENSGACG00000008703	cpsf1	100	87.095	ENSMZEG00005001168	cpsf1	100	87.026	Maylandia_zebra
ENSGACG00000008703	cpsf1	100	78.449	ENSMAUG00000003601	Cpsf1	100	78.404	Mesocricetus_auratus
ENSGACG00000008703	cpsf1	100	78.734	ENSMICG00000015767	CPSF1	100	78.675	Microcebus_murinus
ENSGACG00000008703	cpsf1	100	78.473	ENSMOCG00000022758	Cpsf1	100	78.552	Microtus_ochrogaster
ENSGACG00000008703	cpsf1	100	90.821	ENSMMOG00000021245	cpsf1	100	90.614	Mola_mola
ENSGACG00000008703	cpsf1	100	78.836	ENSMODG00000010755	CPSF1	100	78.973	Monodelphis_domestica
ENSGACG00000008703	cpsf1	100	88.844	ENSMALG00000020545	cpsf1	100	89.009	Monopterus_albus
ENSGACG00000008703	cpsf1	100	78.532	MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.542	Mus_caroli
ENSGACG00000008703	cpsf1	100	78.601	ENSMUSG00000034022	Cpsf1	100	78.611	Mus_musculus
ENSGACG00000008703	cpsf1	100	78.532	MGP_PahariEiJ_G0019946	Cpsf1	100	78.542	Mus_pahari
ENSGACG00000008703	cpsf1	100	78.601	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.611	Mus_spretus
ENSGACG00000008703	cpsf1	99	75.355	ENSMPUG00000006419	CPSF1	93	79.500	Mustela_putorius_furo
ENSGACG00000008703	cpsf1	100	78.611	ENSNGAG00000022460	Cpsf1	100	78.621	Nannospalax_galili
ENSGACG00000008703	cpsf1	100	84.160	ENSNBRG00000000813	cpsf1	100	84.022	Neolamprologus_brichardi
ENSGACG00000008703	cpsf1	86	67.117	ENSNLEG00000010633	-	100	78.704	Nomascus_leucogenys
ENSGACG00000008703	cpsf1	82	85.465	ENSMEUG00000014922	CPSF1	85	85.465	Notamacropus_eugenii
ENSGACG00000008703	cpsf1	61	87.368	ENSOPRG00000004693	-	70	87.368	Ochotona_princeps
ENSGACG00000008703	cpsf1	100	78.940	ENSODEG00000013995	CPSF1	100	78.951	Octodon_degus
ENSGACG00000008703	cpsf1	100	90.640	ENSONIG00000007676	cpsf1	100	90.640	Oreochromis_niloticus
ENSGACG00000008703	cpsf1	59	76.429	ENSOANG00000010716	CPSF1	89	76.429	Ornithorhynchus_anatinus
ENSGACG00000008703	cpsf1	100	87.763	ENSORLG00000013544	cpsf1	100	87.797	Oryzias_latipes
ENSGACG00000008703	cpsf1	100	87.763	ENSORLG00020021693	cpsf1	100	87.797	Oryzias_latipes_hni
ENSGACG00000008703	cpsf1	100	87.797	ENSORLG00015009979	cpsf1	100	87.830	Oryzias_latipes_hsok
ENSGACG00000008703	cpsf1	100	87.475	ENSOMEG00000011849	cpsf1	100	87.475	Oryzias_melastigma
ENSGACG00000008703	cpsf1	100	78.817	ENSOGAG00000000315	CPSF1	100	78.748	Otolemur_garnettii
ENSGACG00000008703	cpsf1	100	78.680	ENSPPAG00000019280	CPSF1	100	79.630	Pan_paniscus
ENSGACG00000008703	cpsf1	100	78.680	ENSPTRG00000049288	-	100	79.630	Pan_troglodytes
ENSGACG00000008703	cpsf1	100	77.350	ENSPTRG00000051253	-	100	79.630	Pan_troglodytes
ENSGACG00000008703	cpsf1	97	78.846	ENSPANG00000015005	CPSF1	100	78.704	Papio_anubis
ENSGACG00000008703	cpsf1	100	86.176	ENSPKIG00000002582	cpsf1	100	86.381	Paramormyrops_kingsleyae
ENSGACG00000008703	cpsf1	100	78.973	ENSPCIG00000009035	CPSF1	100	79.110	Phascolarctos_cinereus
ENSGACG00000008703	cpsf1	100	87.264	ENSPFOG00000012870	cpsf1	100	87.466	Poecilia_formosa
ENSGACG00000008703	cpsf1	100	87.542	ENSPREG00000016307	cpsf1	100	87.744	Poecilia_reticulata
ENSGACG00000008703	cpsf1	100	71.753	ENSPPYG00000018973	CPSF1	100	71.605	Pongo_abelii
ENSGACG00000008703	cpsf1	92	83.523	ENSPCAG00000011541	CPSF1	94	83.523	Procavia_capensis
ENSGACG00000008703	cpsf1	100	75.446	ENSPCOG00000020001	CPSF1	100	78.241	Propithecus_coquereli
ENSGACG00000008703	cpsf1	91	86.571	ENSPVAG00000006761	CPSF1	91	86.571	Pteropus_vampyrus
ENSGACG00000008703	cpsf1	100	89.084	ENSPNYG00000004906	cpsf1	100	89.218	Pundamilia_nyererei
ENSGACG00000008703	cpsf1	100	82.037	ENSPNAG00000024395	cpsf1	100	81.831	Pygocentrus_nattereri
ENSGACG00000008703	cpsf1	100	78.380	ENSRNOG00000030705	Cpsf1	100	78.336	Rattus_norvegicus
ENSGACG00000008703	cpsf1	100	78.404	ENSRBIG00000044907	CPSF1	100	79.167	Rhinopithecus_bieti
ENSGACG00000008703	cpsf1	100	78.473	ENSRROG00000044861	CPSF1	100	79.167	Rhinopithecus_roxellana
ENSGACG00000008703	cpsf1	97	79.119	ENSSBOG00000027177	CPSF1	99	79.033	Saimiri_boliviensis_boliviensis
ENSGACG00000008703	cpsf1	100	78.836	ENSSHAG00000006500	CPSF1	100	78.984	Sarcophilus_harrisii
ENSGACG00000008703	cpsf1	100	84.214	ENSSFOG00015004606	cpsf1	100	86.947	Scleropages_formosus
ENSGACG00000008703	cpsf1	100	90.223	ENSSMAG00000020547	cpsf1	100	90.627	Scophthalmus_maximus
ENSGACG00000008703	cpsf1	100	90.966	ENSSDUG00000001100	cpsf1	100	90.759	Seriola_dumerili
ENSGACG00000008703	cpsf1	100	90.897	ENSSLDG00000003619	cpsf1	100	90.828	Seriola_lalandi_dorsalis
ENSGACG00000008703	cpsf1	95	74.319	ENSSARG00000003643	CPSF1	92	75.661	Sorex_araneus
ENSGACG00000008703	cpsf1	100	77.500	ENSSPUG00000014396	CPSF1	99	81.120	Sphenodon_punctatus
ENSGACG00000008703	cpsf1	100	90.094	ENSSPAG00000005349	cpsf1	100	90.296	Stegastes_partitus
ENSGACG00000008703	cpsf1	100	77.945	ENSSSCG00000005906	CPSF1	100	78.082	Sus_scrofa
ENSGACG00000008703	cpsf1	100	87.251	ENSTRUG00000013134	cpsf1	99	87.754	Takifugu_rubripes
ENSGACG00000008703	cpsf1	100	89.049	ENSTNIG00000014027	cpsf1	100	89.049	Tetraodon_nigroviridis
ENSGACG00000008703	cpsf1	77	74.576	ENSTBEG00000001756	CPSF1	91	74.787	Tupaia_belangeri
ENSGACG00000008703	cpsf1	90	82.931	ENSTTRG00000001937	CPSF1	90	82.759	Tursiops_truncatus
ENSGACG00000008703	cpsf1	100	76.100	ENSUAMG00000006476	CPSF1	98	78.910	Ursus_americanus
ENSGACG00000008703	cpsf1	100	88.353	ENSXCOG00000003608	cpsf1	100	88.284	Xiphophorus_couchianus
ENSGACG00000008703	cpsf1	100	87.647	ENSXMAG00000005798	cpsf1	100	87.741	Xiphophorus_maculatus