EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000008839 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 11215 bases
Position: chrgroupXVI:17496458-17507672
Accession: ZDB-GENE-040827-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000011676	SF3b1	PF08920.10	1.4e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000011700	-	4364	-	ENSGACP00000011676	1312 (aa)	-	G3P253

Gene Model

Click here to download ENSGACG00000008839's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000008839's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000008839	sf3b1	100	93.674	ENSG00000115524	SF3B1	100	93.674	Homo_sapiens
ENSGACG00000008839	sf3b1	100	97.418	ENSAPOG00000011894	sf3b1	100	97.418	Acanthochromis_polyacanthus
ENSGACG00000008839	sf3b1	99	93.558	ENSAMEG00000013809	SF3B1	99	93.558	Ailuropoda_melanoleuca
ENSGACG00000008839	sf3b1	100	96.494	ENSACIG00000020910	sf3b1	97	96.494	Amphilophus_citrinellus
ENSGACG00000008839	sf3b1	100	97.267	ENSAOCG00000004478	sf3b1	100	97.267	Amphiprion_ocellaris
ENSGACG00000008839	sf3b1	100	97.267	ENSAPEG00000012937	sf3b1	100	97.267	Amphiprion_percula
ENSGACG00000008839	sf3b1	100	97.416	ENSATEG00000020435	sf3b1	100	97.416	Anabas_testudineus
ENSGACG00000008839	sf3b1	99	93.477	ENSAPLG00000003993	SF3B1	99	93.016	Anas_platyrhynchos
ENSGACG00000008839	sf3b1	100	93.598	ENSACAG00000009612	SF3B1	100	93.140	Anolis_carolinensis
ENSGACG00000008839	sf3b1	100	93.674	ENSANAG00000021577	SF3B1	100	94.931	Aotus_nancymaae
ENSGACG00000008839	sf3b1	100	95.745	ENSACLG00000023470	sf3b1	100	95.745	Astatotilapia_calliptera
ENSGACG00000008839	sf3b1	100	96.203	ENSAMXG00000002219	sf3b1	100	96.203	Astyanax_mexicanus
ENSGACG00000008839	sf3b1	100	93.674	ENSBTAG00000008915	SF3B1	100	93.674	Bos_taurus
ENSGACG00000008839	sf3b1	99	64.863	WBGene00011605	sftb-1	99	64.789	Caenorhabditis_elegans
ENSGACG00000008839	sf3b1	100	93.674	ENSCJAG00000003902	SF3B1	100	93.674	Callithrix_jacchus
ENSGACG00000008839	sf3b1	100	93.674	ENSCAFG00000010826	SF3B1	100	93.674	Canis_familiaris
ENSGACG00000008839	sf3b1	100	93.674	ENSCAFG00020004750	SF3B1	100	93.674	Canis_lupus_dingo
ENSGACG00000008839	sf3b1	100	93.674	ENSCHIG00000015226	SF3B1	100	93.674	Capra_hircus
ENSGACG00000008839	sf3b1	100	93.598	ENSTSYG00000009214	SF3B1	100	93.598	Carlito_syrichta
ENSGACG00000008839	sf3b1	99	93.502	ENSCAPG00000006547	SF3B1	99	93.502	Cavia_aperea
ENSGACG00000008839	sf3b1	99	93.625	ENSCPOG00000009353	SF3B1	100	93.625	Cavia_porcellus
ENSGACG00000008839	sf3b1	100	93.674	ENSCCAG00000020506	SF3B1	100	93.674	Cebus_capucinus
ENSGACG00000008839	sf3b1	100	93.674	ENSCATG00000035735	SF3B1	100	93.674	Cercocebus_atys
ENSGACG00000008839	sf3b1	99	93.630	ENSCLAG00000014767	SF3B1	99	93.630	Chinchilla_lanigera
ENSGACG00000008839	sf3b1	100	93.674	ENSCSAG00000011505	SF3B1	100	93.674	Chlorocebus_sabaeus
ENSGACG00000008839	sf3b1	76	92.474	ENSCHOG00000009860	SF3B1	76	92.474	Choloepus_hoffmanni
ENSGACG00000008839	sf3b1	100	93.674	ENSCPBG00000021902	SF3B1	99	94.599	Chrysemys_picta_bellii
ENSGACG00000008839	sf3b1	68	78.289	ENSCING00000002558	-	99	78.650	Ciona_intestinalis
ENSGACG00000008839	sf3b1	99	80.241	ENSCSAVG00000002559	-	99	80.090	Ciona_savignyi
ENSGACG00000008839	sf3b1	100	93.674	ENSCANG00000029415	SF3B1	100	93.674	Colobus_angolensis_palliatus
ENSGACG00000008839	sf3b1	100	93.674	ENSCGRG00001016990	Sf3b1	100	93.674	Cricetulus_griseus_chok1gshd
ENSGACG00000008839	sf3b1	100	93.674	ENSCGRG00000005301	Sf3b1	100	93.674	Cricetulus_griseus_crigri
ENSGACG00000008839	sf3b1	100	93.369	ENSCSEG00000003860	sf3b1	100	93.369	Cynoglossus_semilaevis
ENSGACG00000008839	sf3b1	96	96.759	ENSCVAG00000003680	sf3b1	99	96.759	Cyprinodon_variegatus
ENSGACG00000008839	sf3b1	100	95.520	ENSDARG00000056138	sf3b1	100	95.520	Danio_rerio
ENSGACG00000008839	sf3b1	100	93.602	ENSDNOG00000011754	SF3B1	100	93.602	Dasypus_novemcinctus
ENSGACG00000008839	sf3b1	99	91.481	ENSDORG00000002399	Sf3b1	100	91.404	Dipodomys_ordii
ENSGACG00000008839	sf3b1	100	75.991	FBgn0031266	Sf3b1	100	75.991	Drosophila_melanogaster
ENSGACG00000008839	sf3b1	83	92.357	ENSETEG00000009188	SF3B1	100	92.357	Echinops_telfairi
ENSGACG00000008839	sf3b1	99	85.780	ENSEBUG00000004325	sf3b1	100	88.245	Eptatretus_burgeri
ENSGACG00000008839	sf3b1	100	93.674	ENSEASG00005020159	SF3B1	98	93.674	Equus_asinus_asinus
ENSGACG00000008839	sf3b1	100	93.674	ENSECAG00000021657	SF3B1	98	93.674	Equus_caballus
ENSGACG00000008839	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSGACG00000008839	sf3b1	100	96.226	ENSELUG00000005977	sf3b1	98	96.226	Esox_lucius
ENSGACG00000008839	sf3b1	100	93.674	ENSFCAG00000005038	SF3B1	100	93.674	Felis_catus
ENSGACG00000008839	sf3b1	99	93.400	ENSFALG00000004281	SF3B1	99	92.939	Ficedula_albicollis
ENSGACG00000008839	sf3b1	100	93.674	ENSFDAG00000017510	SF3B1	100	93.674	Fukomys_damarensis
ENSGACG00000008839	sf3b1	100	96.128	ENSFHEG00000014333	sf3b1	100	96.128	Fundulus_heteroclitus
ENSGACG00000008839	sf3b1	100	97.108	ENSGMOG00000006773	sf3b1	100	97.108	Gadus_morhua
ENSGACG00000008839	sf3b1	100	93.521	ENSGALG00000008038	SF3B1	100	93.064	Gallus_gallus
ENSGACG00000008839	sf3b1	100	95.506	ENSGAFG00000000704	sf3b1	100	97.147	Gambusia_affinis
ENSGACG00000008839	sf3b1	100	93.036	ENSGAGG00000017478	SF3B1	100	92.657	Gopherus_agassizii
ENSGACG00000008839	sf3b1	99	88.565	ENSGGOG00000009264	SF3B1	99	88.642	Gorilla_gorilla
ENSGACG00000008839	sf3b1	99	95.814	ENSHBUG00000007705	sf3b1	99	95.814	Haplochromis_burtoni
ENSGACG00000008839	sf3b1	99	93.630	ENSHGLG00000008285	-	99	93.630	Heterocephalus_glaber_female
ENSGACG00000008839	sf3b1	99	91.635	ENSHGLG00100005535	-	99	91.635	Heterocephalus_glaber_male
ENSGACG00000008839	sf3b1	100	96.979	ENSHCOG00000016775	sf3b1	100	96.979	Hippocampus_comes
ENSGACG00000008839	sf3b1	100	96.507	ENSIPUG00000013171	sf3b1	100	96.507	Ictalurus_punctatus
ENSGACG00000008839	sf3b1	100	93.674	ENSSTOG00000011034	SF3B1	100	93.674	Ictidomys_tridecemlineatus
ENSGACG00000008839	sf3b1	99	93.606	ENSJJAG00000010903	Sf3b1	99	93.606	Jaculus_jaculus
ENSGACG00000008839	sf3b1	100	96.212	ENSKMAG00000004009	sf3b1	100	96.212	Kryptolebias_marmoratus
ENSGACG00000008839	sf3b1	100	98.247	ENSLBEG00000022208	sf3b1	100	98.247	Labrus_bergylta
ENSGACG00000008839	sf3b1	99	90.396	ENSLACG00000014832	SF3B1	99	90.091	Latimeria_chalumnae
ENSGACG00000008839	sf3b1	100	95.068	ENSLOCG00000003899	sf3b1	100	95.068	Lepisosteus_oculatus
ENSGACG00000008839	sf3b1	100	93.674	ENSLAFG00000001956	SF3B1	100	93.674	Loxodonta_africana
ENSGACG00000008839	sf3b1	99	93.630	ENSMMUG00000022430	SF3B1	99	93.630	Macaca_mulatta
ENSGACG00000008839	sf3b1	100	93.674	ENSMNEG00000042333	SF3B1	100	94.931	Macaca_nemestrina
ENSGACG00000008839	sf3b1	94	88.934	ENSMLEG00000026141	SF3B1	98	89.669	Mandrillus_leucophaeus
ENSGACG00000008839	sf3b1	100	97.492	ENSMAMG00000010241	sf3b1	100	97.492	Mastacembelus_armatus
ENSGACG00000008839	sf3b1	100	95.745	ENSMZEG00005021254	sf3b1	100	95.745	Maylandia_zebra
ENSGACG00000008839	sf3b1	99	92.863	ENSMGAG00000007017	SF3B1	99	92.402	Meleagris_gallopavo
ENSGACG00000008839	sf3b1	99	89.409	ENSMAUG00000009071	Sf3b1	99	89.409	Mesocricetus_auratus
ENSGACG00000008839	sf3b1	100	93.674	ENSMICG00000013879	SF3B1	100	93.674	Microcebus_murinus
ENSGACG00000008839	sf3b1	99	89.187	ENSMOCG00000000455	Sf3b1	99	89.187	Microtus_ochrogaster
ENSGACG00000008839	sf3b1	84	97.448	ENSMMOG00000000475	sf3b1	100	97.448	Mola_mola
ENSGACG00000008839	sf3b1	100	93.216	ENSMODG00000012275	SF3B1	100	92.759	Monodelphis_domestica
ENSGACG00000008839	sf3b1	100	97.264	ENSMALG00000017211	sf3b1	100	97.264	Monopterus_albus
ENSGACG00000008839	sf3b1	100	93.674	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.674	Mus_caroli
ENSGACG00000008839	sf3b1	100	93.674	ENSMUSG00000025982	Sf3b1	100	93.674	Mus_musculus
ENSGACG00000008839	sf3b1	100	93.674	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.674	Mus_spretus
ENSGACG00000008839	sf3b1	100	93.674	ENSMPUG00000007799	SF3B1	100	93.674	Mustela_putorius_furo
ENSGACG00000008839	sf3b1	100	92.530	ENSMLUG00000000840	SF3B1	100	92.530	Myotis_lucifugus
ENSGACG00000008839	sf3b1	99	93.349	ENSNGAG00000021884	-	100	93.349	Nannospalax_galili
ENSGACG00000008839	sf3b1	100	91.698	ENSNBRG00000015816	sf3b1	100	91.698	Neolamprologus_brichardi
ENSGACG00000008839	sf3b1	100	93.674	ENSNLEG00000006861	SF3B1	100	93.674	Nomascus_leucogenys
ENSGACG00000008839	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSGACG00000008839	sf3b1	100	83.079	ENSOPRG00000008596	SF3B1	100	83.079	Ochotona_princeps
ENSGACG00000008839	sf3b1	100	93.674	ENSODEG00000011153	-	100	93.674	Octodon_degus
ENSGACG00000008839	sf3b1	100	95.745	ENSONIG00000013758	sf3b1	100	95.745	Oreochromis_niloticus
ENSGACG00000008839	sf3b1	83	96.218	ENSOCUG00000012722	-	96	96.218	Oryctolagus_cuniculus
ENSGACG00000008839	sf3b1	100	96.125	ENSORLG00000020219	sf3b1	100	96.125	Oryzias_latipes
ENSGACG00000008839	sf3b1	100	96.125	ENSORLG00020001746	sf3b1	100	96.125	Oryzias_latipes_hni
ENSGACG00000008839	sf3b1	64	94.768	ENSORLG00015001759	sf3b1	98	94.768	Oryzias_latipes_hsok
ENSGACG00000008839	sf3b1	100	96.507	ENSOMEG00000019231	sf3b1	100	96.507	Oryzias_melastigma
ENSGACG00000008839	sf3b1	100	93.674	ENSOARG00000015374	SF3B1	100	93.674	Ovis_aries
ENSGACG00000008839	sf3b1	100	93.674	ENSPPAG00000035007	SF3B1	100	93.674	Pan_paniscus
ENSGACG00000008839	sf3b1	100	93.674	ENSPPRG00000009090	SF3B1	100	93.674	Panthera_pardus
ENSGACG00000008839	sf3b1	100	93.674	ENSPTIG00000021557	SF3B1	100	93.674	Panthera_tigris_altaica
ENSGACG00000008839	sf3b1	99	86.294	ENSPTRG00000012771	SF3B1	99	86.294	Pan_troglodytes
ENSGACG00000008839	sf3b1	100	93.674	ENSPANG00000013417	SF3B1	100	93.674	Papio_anubis
ENSGACG00000008839	sf3b1	99	95.579	ENSPKIG00000000784	sf3b1	99	95.351	Paramormyrops_kingsleyae
ENSGACG00000008839	sf3b1	99	92.473	ENSPSIG00000017222	SF3B1	98	92.166	Pelodiscus_sinensis
ENSGACG00000008839	sf3b1	91	96.804	ENSPMGG00000004330	sf3b1	99	96.804	Periophthalmus_magnuspinnatus
ENSGACG00000008839	sf3b1	99	93.630	ENSPEMG00000010699	Sf3b1	100	93.630	Peromyscus_maniculatus_bairdii
ENSGACG00000008839	sf3b1	99	89.083	ENSPMAG00000001311	sf3b1	99	89.007	Petromyzon_marinus
ENSGACG00000008839	sf3b1	100	93.293	ENSPCIG00000010642	SF3B1	100	92.835	Phascolarctos_cinereus
ENSGACG00000008839	sf3b1	100	96.813	ENSPFOG00000000073	sf3b1	100	96.813	Poecilia_formosa
ENSGACG00000008839	sf3b1	100	96.887	ENSPLAG00000002293	sf3b1	100	96.887	Poecilia_latipinna
ENSGACG00000008839	sf3b1	100	96.887	ENSPMEG00000000446	sf3b1	98	96.887	Poecilia_mexicana
ENSGACG00000008839	sf3b1	100	96.963	ENSPREG00000019652	sf3b1	100	96.963	Poecilia_reticulata
ENSGACG00000008839	sf3b1	83	96.694	ENSPPYG00000013044	SF3B1	100	96.694	Pongo_abelii
ENSGACG00000008839	sf3b1	100	93.521	ENSPCAG00000009292	SF3B1	100	93.521	Procavia_capensis
ENSGACG00000008839	sf3b1	100	93.674	ENSPCOG00000024074	SF3B1	100	93.674	Propithecus_coquereli
ENSGACG00000008839	sf3b1	100	93.674	ENSPVAG00000008302	SF3B1	100	93.674	Pteropus_vampyrus
ENSGACG00000008839	sf3b1	100	95.669	ENSPNYG00000014939	sf3b1	100	95.669	Pundamilia_nyererei
ENSGACG00000008839	sf3b1	100	95.520	ENSPNAG00000008288	sf3b1	100	95.292	Pygocentrus_nattereri
ENSGACG00000008839	sf3b1	100	93.674	ENSRNOG00000013516	Sf3b1	100	93.674	Rattus_norvegicus
ENSGACG00000008839	sf3b1	99	89.924	ENSRBIG00000026096	SF3B1	100	89.924	Rhinopithecus_bieti
ENSGACG00000008839	sf3b1	100	93.674	ENSRROG00000031308	SF3B1	100	93.674	Rhinopithecus_roxellana
ENSGACG00000008839	sf3b1	100	93.674	ENSSBOG00000020080	SF3B1	100	93.674	Saimiri_boliviensis_boliviensis
ENSGACG00000008839	sf3b1	100	93.216	ENSSHAG00000017564	SF3B1	100	92.759	Sarcophilus_harrisii
ENSGACG00000008839	sf3b1	100	95.368	ENSSFOG00015021535	sf3b1	100	95.368	Scleropages_formosus
ENSGACG00000008839	sf3b1	99	97.121	ENSSMAG00000013977	sf3b1	99	97.121	Scophthalmus_maximus
ENSGACG00000008839	sf3b1	100	97.416	ENSSDUG00000017422	sf3b1	100	97.416	Seriola_dumerili
ENSGACG00000008839	sf3b1	100	97.492	ENSSLDG00000019495	sf3b1	100	97.492	Seriola_lalandi_dorsalis
ENSGACG00000008839	sf3b1	75	98.944	ENSSARG00000007016	SF3B1	75	98.944	Sorex_araneus
ENSGACG00000008839	sf3b1	100	93.445	ENSSPUG00000000410	SF3B1	100	92.988	Sphenodon_punctatus
ENSGACG00000008839	sf3b1	100	97.188	ENSSPAG00000010451	sf3b1	99	97.188	Stegastes_partitus
ENSGACG00000008839	sf3b1	91	93.150	ENSSSCG00000016075	SF3B1	100	94.931	Sus_scrofa
ENSGACG00000008839	sf3b1	100	93.521	ENSTGUG00000010553	SF3B1	100	93.064	Taeniopygia_guttata
ENSGACG00000008839	sf3b1	100	96.960	ENSTRUG00000015534	sf3b1	100	96.960	Takifugu_rubripes
ENSGACG00000008839	sf3b1	84	97.211	ENSTBEG00000008714	SF3B1	93	97.211	Tupaia_belangeri
ENSGACG00000008839	sf3b1	92	93.426	ENSTTRG00000003414	SF3B1	92	93.426	Tursiops_truncatus
ENSGACG00000008839	sf3b1	94	83.633	ENSUAMG00000018506	SF3B1	99	97.976	Ursus_americanus
ENSGACG00000008839	sf3b1	100	93.674	ENSUMAG00000020945	SF3B1	100	93.674	Ursus_maritimus
ENSGACG00000008839	sf3b1	100	86.509	ENSVPAG00000005798	SF3B1	100	86.509	Vicugna_pacos
ENSGACG00000008839	sf3b1	100	93.674	ENSVVUG00000025948	SF3B1	95	93.674	Vulpes_vulpes
ENSGACG00000008839	sf3b1	100	92.079	ENSXETG00000013339	sf3b1	100	92.079	Xenopus_tropicalis
ENSGACG00000008839	sf3b1	100	92.917	ENSXCOG00000018086	sf3b1	100	92.993	Xiphophorus_couchianus
ENSGACG00000008839	sf3b1	100	97.039	ENSXMAG00000007369	sf3b1	100	97.154	Xiphophorus_maculatus