EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000008970 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 5522 bases
Position: chrgroupVIII:10775000-10780521
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000011877	RRM_1	PF00076.22	2.1e-61	1	4
ENSGACP00000011877	RRM_1	PF00076.22	2.1e-61	2	4
ENSGACP00000011877	RRM_1	PF00076.22	2.1e-61	3	4
ENSGACP00000011877	RRM_1	PF00076.22	2.1e-61	4	4
ENSGACP00000011862	RRM_1	PF00076.22	3.8e-61	1	4
ENSGACP00000011862	RRM_1	PF00076.22	3.8e-61	2	4
ENSGACP00000011862	RRM_1	PF00076.22	3.8e-61	3	4
ENSGACP00000011862	RRM_1	PF00076.22	3.8e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000011886	-	2049	-	ENSGACP00000011862	683 (aa)	-	G3P2N9
ENSGACT00000011901	-	1842	-	ENSGACP00000011877	614 (aa)	-	G3P2Q4

Gene Model

Click here to download ENSGACG00000008970's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000008970's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000008970	ncl	56	32.044	ENSGACG00000002792	pabpc1l	57	32.044
ENSGACG00000008970	ncl	56	30.909	ENSGACG00000019028	rbm14b	63	31.138
ENSGACG00000008970	ncl	56	32.738	ENSGACG00000007179	pabpc4	57	33.133
ENSGACG00000008970	ncl	50	32.222	ENSGACG00000012612	rbm28	52	32.222
ENSGACG00000008970	ncl	51	33.735	ENSGACG00000003771	pabpc1b	64	33.735
ENSGACG00000008970	ncl	51	33.735	ENSGACG00000003572	pabpc1a	56	33.735

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000008970	ncl	61	82.133	ENSAPOG00000023888	ncl	89	72.473	Acanthochromis_polyacanthus
ENSGACG00000008970	ncl	71	39.294	ENSAPOG00000014534	-	67	40.979	Acanthochromis_polyacanthus
ENSGACG00000008970	ncl	74	74.734	ENSACIG00000013234	ncl	62	74.734	Amphilophus_citrinellus
ENSGACG00000008970	ncl	71	39.168	ENSAOCG00000014792	-	62	41.131	Amphiprion_ocellaris
ENSGACG00000008970	ncl	61	82.133	ENSAOCG00000003133	ncl	89	72.727	Amphiprion_ocellaris
ENSGACG00000008970	ncl	66	78.147	ENSAPEG00000002769	ncl	89	72.188	Amphiprion_percula
ENSGACG00000008970	ncl	71	39.168	ENSAPEG00000013612	-	62	41.131	Amphiprion_percula
ENSGACG00000008970	ncl	73	39.729	ENSATEG00000019862	-	80	42.748	Anabas_testudineus
ENSGACG00000008970	ncl	72	77.489	ENSATEG00000013343	ncl	89	74.603	Anabas_testudineus
ENSGACG00000008970	ncl	75	50.756	ENSAPLG00000012897	-	62	56.764	Anas_platyrhynchos
ENSGACG00000008970	ncl	91	51.742	ENSACAG00000001006	-	54	61.579	Anolis_carolinensis
ENSGACG00000008970	ncl	54	74.398	ENSACLG00000026031	ncl	88	74.398	Astatotilapia_calliptera
ENSGACG00000008970	ncl	55	67.340	ENSAMXG00000001647	ncl	84	67.677	Astyanax_mexicanus
ENSGACG00000008970	ncl	59	39.702	ENSCHIG00000012665	-	69	36.170	Capra_hircus
ENSGACG00000008970	ncl	64	56.125	ENSCPBG00000016444	-	56	57.632	Chrysemys_picta_bellii
ENSGACG00000008970	ncl	62	79.714	ENSCSEG00000015089	ncl	87	69.565	Cynoglossus_semilaevis
ENSGACG00000008970	ncl	61	77.540	ENSCVAG00000012600	ncl	90	67.250	Cyprinodon_variegatus
ENSGACG00000008970	ncl	66	71.429	ENSDARG00000002710	ncl	83	73.418	Danio_rerio
ENSGACG00000008970	ncl	58	46.832	ENSDNOG00000040257	-	60	46.900	Dasypus_novemcinctus
ENSGACG00000008970	ncl	55	44.800	ENSDNOG00000031611	-	70	43.358	Dasypus_novemcinctus
ENSGACG00000008970	ncl	68	47.032	ENSEBUG00000016173	ncl	60	48.872	Eptatretus_burgeri
ENSGACG00000008970	ncl	63	68.265	ENSELUG00000006033	ncl	90	62.378	Esox_lucius
ENSGACG00000008970	ncl	62	47.895	ENSELUG00000022826	-	81	47.606	Esox_lucius
ENSGACG00000008970	ncl	68	52.471	ENSFALG00000007592	-	54	56.464	Ficedula_albicollis
ENSGACG00000008970	ncl	60	75.806	ENSFHEG00000018000	ncl	65	72.684	Fundulus_heteroclitus
ENSGACG00000008970	ncl	87	55.868	ENSGMOG00000001341	ncl	84	58.163	Gadus_morhua
ENSGACG00000008970	ncl	60	57.407	ENSGALG00000032930	NCL	55	56.589	Gallus_gallus
ENSGACG00000008970	ncl	56	76.425	ENSGAFG00000015375	ncl	70	65.559	Gambusia_affinis
ENSGACG00000008970	ncl	64	56.278	ENSGAGG00000013330	-	64	56.208	Gopherus_agassizii
ENSGACG00000008970	ncl	86	77.419	ENSHBUG00000006869	ncl	89	67.773	Haplochromis_burtoni
ENSGACG00000008970	ncl	75	73.535	ENSHCOG00000010234	ncl	88	69.797	Hippocampus_comes
ENSGACG00000008970	ncl	51	67.619	ENSIPUG00000024556	ncl	78	68.387	Ictalurus_punctatus
ENSGACG00000008970	ncl	66	78.398	ENSKMAG00000008111	ncl	90	71.406	Kryptolebias_marmoratus
ENSGACG00000008970	ncl	66	80.769	ENSLBEG00000019073	ncl	88	76.183	Labrus_bergylta
ENSGACG00000008970	ncl	61	42.785	ENSLBEG00000007915	-	66	42.894	Labrus_bergylta
ENSGACG00000008970	ncl	58	41.910	ENSLBEG00000014278	-	82	42.740	Labrus_bergylta
ENSGACG00000008970	ncl	75	52.507	ENSLACG00000022167	-	80	52.800	Latimeria_chalumnae
ENSGACG00000008970	ncl	66	59.135	ENSLACG00000009328	ncl	62	59.466	Latimeria_chalumnae
ENSGACG00000008970	ncl	58	66.482	ENSLOCG00000004828	ncl	74	58.814	Lepisosteus_oculatus
ENSGACG00000008970	ncl	73	36.117	ENSMAMG00000003479	-	69	39.267	Mastacembelus_armatus
ENSGACG00000008970	ncl	99	66.297	ENSMAMG00000002086	ncl	76	69.953	Mastacembelus_armatus
ENSGACG00000008970	ncl	60	77.419	ENSMZEG00005017438	ncl	89	69.537	Maylandia_zebra
ENSGACG00000008970	ncl	58	57.500	ENSMGAG00000008147	-	83	57.500	Meleagris_gallopavo
ENSGACG00000008970	ncl	59	79.479	ENSMMOG00000008553	ncl	82	80.645	Mola_mola
ENSGACG00000008970	ncl	60	55.497	ENSMODG00000002470	-	54	55.641	Monodelphis_domestica
ENSGACG00000008970	ncl	99	67.205	ENSMALG00000014827	ncl	97	69.144	Monopterus_albus
ENSGACG00000008970	ncl	56	43.042	ENSMPUG00000001663	-	59	43.770	Mustela_putorius_furo
ENSGACG00000008970	ncl	60	77.660	ENSNBRG00000001232	ncl	99	73.889	Neolamprologus_brichardi
ENSGACG00000008970	ncl	60	77.660	ENSNBRG00000000146	-	90	76.206	Neolamprologus_brichardi
ENSGACG00000008970	ncl	60	57.825	ENSMEUG00000012335	-	54	57.963	Notamacropus_eugenii
ENSGACG00000008970	ncl	62	35.171	ENSONIG00000010631	-	97	36.979	Oreochromis_niloticus
ENSGACG00000008970	ncl	60	77.419	ENSONIG00000012508	ncl	89	67.975	Oreochromis_niloticus
ENSGACG00000008970	ncl	61	57.552	ENSOANG00000008732	-	61	58.073	Ornithorhynchus_anatinus
ENSGACG00000008970	ncl	58	80.952	ENSORLG00000007055	ncl	85	64.062	Oryzias_latipes
ENSGACG00000008970	ncl	64	36.631	ENSORLG00000004645	-	83	37.688	Oryzias_latipes
ENSGACG00000008970	ncl	62	38.010	ENSORLG00020003497	-	74	37.688	Oryzias_latipes_hni
ENSGACG00000008970	ncl	60	79.730	ENSORLG00020017943	ncl	74	63.712	Oryzias_latipes_hni
ENSGACG00000008970	ncl	66	72.947	ENSORLG00015013815	ncl	84	80.392	Oryzias_latipes_hsok
ENSGACG00000008970	ncl	62	38.776	ENSORLG00015006613	-	77	38.442	Oryzias_latipes_hsok
ENSGACG00000008970	ncl	60	39.267	ENSOMEG00000015864	-	85	38.947	Oryzias_melastigma
ENSGACG00000008970	ncl	61	80.000	ENSOMEG00000020786	ncl	84	68.319	Oryzias_melastigma
ENSGACG00000008970	ncl	67	71.698	ENSPKIG00000002604	ncl	78	64.566	Paramormyrops_kingsleyae
ENSGACG00000008970	ncl	61	57.922	ENSPSIG00000002361	-	56	57.215	Pelodiscus_sinensis
ENSGACG00000008970	ncl	64	73.227	ENSPMGG00000004709	ncl	84	76.797	Periophthalmus_magnuspinnatus
ENSGACG00000008970	ncl	72	49.310	ENSPMAG00000003855	ncl	74	40.323	Petromyzon_marinus
ENSGACG00000008970	ncl	60	56.545	ENSPCIG00000003293	-	54	56.364	Phascolarctos_cinereus
ENSGACG00000008970	ncl	72	73.043	ENSPFOG00000024205	ncl	90	67.005	Poecilia_formosa
ENSGACG00000008970	ncl	72	72.549	ENSPLAG00000024026	ncl	85	61.526	Poecilia_latipinna
ENSGACG00000008970	ncl	69	72.479	ENSPMEG00000006000	ncl	57	75.229	Poecilia_mexicana
ENSGACG00000008970	ncl	60	77.419	ENSPNYG00000020494	ncl	89	69.280	Pundamilia_nyererei
ENSGACG00000008970	ncl	66	66.029	ENSPNAG00000006192	ncl	72	60.727	Pygocentrus_nattereri
ENSGACG00000008970	ncl	53	44.688	ENSSFOG00015013153	-	79	45.631	Scleropages_formosus
ENSGACG00000008970	ncl	57	70.951	ENSSFOG00015008583	ncl	94	62.696	Scleropages_formosus
ENSGACG00000008970	ncl	66	80.048	ENSSMAG00000021241	ncl	88	66.819	Scophthalmus_maximus
ENSGACG00000008970	ncl	72	37.833	ENSSMAG00000007582	-	67	42.636	Scophthalmus_maximus
ENSGACG00000008970	ncl	69	39.648	ENSSDUG00000010922	-	70	42.670	Seriola_dumerili
ENSGACG00000008970	ncl	73	82.632	ENSSDUG00000006128	ncl	97	71.649	Seriola_dumerili
ENSGACG00000008970	ncl	75	78.079	ENSSLDG00000002012	ncl	88	77.600	Seriola_lalandi_dorsalis
ENSGACG00000008970	ncl	65	41.262	ENSSLDG00000015784	-	65	42.448	Seriola_lalandi_dorsalis
ENSGACG00000008970	ncl	63	57.500	ENSSPUG00000008244	-	60	59.103	Sphenodon_punctatus
ENSGACG00000008970	ncl	62	41.206	ENSSPAG00000001859	-	62	40.874	Stegastes_partitus
ENSGACG00000008970	ncl	52	82.313	ENSSPAG00000002637	ncl	80	82.313	Stegastes_partitus
ENSGACG00000008970	ncl	61	55.696	ENSTGUG00000009782	-	61	56.883	Taeniopygia_guttata
ENSGACG00000008970	ncl	63	75.229	ENSTRUG00000008185	ncl	87	69.157	Takifugu_rubripes
ENSGACG00000008970	ncl	74	71.358	ENSTNIG00000012186	ncl	97	65.655	Tetraodon_nigroviridis
ENSGACG00000008970	ncl	91	50.347	ENSXETG00000009517	ncl	54	58.718	Xenopus_tropicalis
ENSGACG00000008970	ncl	63	48.824	ENSXCOG00000003524	ncl	85	60.104	Xiphophorus_couchianus
ENSGACG00000008970	ncl	60	39.050	ENSXCOG00000007369	-	89	39.050	Xiphophorus_couchianus
ENSGACG00000008970	ncl	61	77.867	ENSXMAG00000005914	ncl	90	68.771	Xiphophorus_maculatus