EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000009435 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 4195 bases
Position: chrgroupXII:11710977-11715171
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000012442	RRM_1	PF00076.22	1.1e-32	1	2
ENSGACP00000012442	RRM_1	PF00076.22	1.1e-32	2	2
ENSGACP00000012446	RRM_1	PF00076.22	6.7e-24	1	2
ENSGACP00000012446	RRM_1	PF00076.22	6.7e-24	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000012466	-	1321	-	ENSGACP00000012442	388 (aa)	-	G3P4B9
ENSGACT00000012470	-	1465	-	ENSGACP00000012446	303 (aa)	-	G3P4C3

Gene Model

Click here to download ENSGACG00000009435's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000009435's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000009435	-	52	36.129	ENSGACG00000008259	dazap1	53	37.824
ENSGACG00000009435	-	50	78.462	ENSGACG00000004477	hnrnpa3	77	67.932
ENSGACG00000009435	-	55	56.024	ENSGACG00000016447	hnrnpa0b	63	60.335
ENSGACG00000009435	-	85	39.175	ENSGACG00000015669	hnrnpd	54	38.333
ENSGACG00000009435	-	67	34.375	ENSGACG00000018116	hnrnpaba	50	37.356
ENSGACG00000009435	-	70	38.824	ENSGACG00000020830	-	53	38.418
ENSGACG00000009435	-	70	34.259	ENSGACG00000012679	MSI1	55	40.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000009435	-	60	90.055	ENSAPOG00000019369	-	63	88.202	Acanthochromis_polyacanthus
ENSGACG00000009435	-	60	90.055	ENSAOCG00000005289	-	63	88.202	Amphiprion_ocellaris
ENSGACG00000009435	-	60	90.055	ENSAPEG00000004179	-	63	88.202	Amphiprion_percula
ENSGACG00000009435	-	60	91.713	ENSATEG00000022918	hnrnpa1a	86	94.022	Anabas_testudineus
ENSGACG00000009435	-	60	89.560	ENSACLG00000006940	-	63	89.944	Astatotilapia_calliptera
ENSGACG00000009435	-	52	50.777	ENSCSEG00000014051	-	74	52.486	Cynoglossus_semilaevis
ENSGACG00000009435	-	60	85.405	ENSCSEG00000007589	hnrnpa1a	77	81.517	Cynoglossus_semilaevis
ENSGACG00000009435	-	87	78.868	ENSCVAG00000012637	hnrnpa1a	62	89.888	Cyprinodon_variegatus
ENSGACG00000009435	-	53	81.579	ENSDARG00000011020	hnrnpa1a	68	59.307	Danio_rerio
ENSGACG00000009435	-	52	56.477	ENSDORG00000026425	-	60	47.210	Dipodomys_ordii
ENSGACG00000009435	-	50	89.175	ENSELUG00000007372	-	51	91.304	Esox_lucius
ENSGACG00000009435	-	61	42.391	ENSGAFG00000016803	-	63	45.344	Gambusia_affinis
ENSGACG00000009435	-	87	81.132	ENSGAFG00000007751	-	62	89.888	Gambusia_affinis
ENSGACG00000009435	-	87	81.955	ENSHBUG00000005647	hnrnpa1a	64	89.944	Haplochromis_burtoni
ENSGACG00000009435	-	50	81.538	ENSIPUG00000022440	-	72	83.234	Ictalurus_punctatus
ENSGACG00000009435	-	54	86.525	ENSIPUG00000002023	hnrnpa1a	76	87.429	Ictalurus_punctatus
ENSGACG00000009435	-	100	77.558	ENSKMAG00000020859	-	63	89.888	Kryptolebias_marmoratus
ENSGACG00000009435	-	60	90.164	ENSLBEG00000010010	hnrnpa1a	61	91.667	Labrus_bergylta
ENSGACG00000009435	-	87	80.970	ENSMAMG00000007606	-	61	88.764	Mastacembelus_armatus
ENSGACG00000009435	-	87	81.955	ENSMZEG00005027173	hnrnpa1a	63	89.944	Maylandia_zebra
ENSGACG00000009435	-	79	69.328	ENSMMOG00000008251	hnrnpa1a	92	81.768	Mola_mola
ENSGACG00000009435	-	60	92.265	ENSMALG00000014091	hnrnpa1a	61	88.764	Monopterus_albus
ENSGACG00000009435	-	60	89.560	ENSNBRG00000018441	-	64	89.944	Neolamprologus_brichardi
ENSGACG00000009435	-	60	51.445	ENSORLG00000029240	-	94	51.445	Oryzias_latipes
ENSGACG00000009435	-	87	80.755	ENSORLG00000008001	-	64	92.697	Oryzias_latipes
ENSGACG00000009435	-	87	80.755	ENSORLG00020006582	hnrnpa1a	96	91.279	Oryzias_latipes_hni
ENSGACG00000009435	-	64	48.485	ENSORLG00020022498	-	80	51.149	Oryzias_latipes_hni
ENSGACG00000009435	-	87	40.530	ENSORLG00020006043	-	60	49.275	Oryzias_latipes_hni
ENSGACG00000009435	-	87	80.377	ENSORLG00015022294	-	64	92.135	Oryzias_latipes_hsok
ENSGACG00000009435	-	88	81.716	ENSOMEG00000015959	-	64	92.697	Oryzias_melastigma
ENSGACG00000009435	-	63	75.916	ENSPMGG00000011804	hnrnpa1a	69	89.730	Periophthalmus_magnuspinnatus
ENSGACG00000009435	-	87	80.000	ENSPFOG00000001825	-	62	89.888	Poecilia_formosa
ENSGACG00000009435	-	87	80.000	ENSPMEG00000002425	-	62	89.888	Poecilia_mexicana
ENSGACG00000009435	-	54	83.898	ENSPNAG00000007752	hnrnpa1a	73	85.792	Pygocentrus_nattereri
ENSGACG00000009435	-	55	88.690	ENSSMAG00000004641	hnrnpa1a	77	80.328	Scophthalmus_maximus
ENSGACG00000009435	-	87	93.421	ENSSDUG00000013908	hnrnpa1a	83	94.944	Seriola_dumerili
ENSGACG00000009435	-	87	90.385	ENSSLDG00000003718	hnrnpa1a	89	86.175	Seriola_lalandi_dorsalis
ENSGACG00000009435	-	88	82.463	ENSSPAG00000018518	-	64	89.385	Stegastes_partitus
ENSGACG00000009435	-	59	87.222	ENSTRUG00000020491	-	72	79.508	Takifugu_rubripes
ENSGACG00000009435	-	50	58.919	ENSTNIG00000007398	-	69	58.659	Tetraodon_nigroviridis
ENSGACG00000009435	-	63	79.058	ENSXCOG00000009001	-	91	85.388	Xiphophorus_couchianus
ENSGACG00000009435	-	87	82.264	ENSXMAG00000008076	-	90	76.667	Xiphophorus_maculatus