EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000009468 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 3790 bases
Position: chrgroupVI:11218009-11221798
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000012540	TUDOR	PF00567.24	8.2e-06	1	1
ENSGACP00000012540	SMN	PF06003.12	8.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000012564	-	1330	-	ENSGACP00000012540	238 (aa)	-	G3P4L7

Gene Model

Click here to download ENSGACG00000009468's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000009468's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000009468	smndc1	100	76.050	ENSG00000119953	SMNDC1	100	76.050	Homo_sapiens
ENSGACG00000009468	smndc1	100	90.756	ENSAPOG00000021772	smndc1	100	90.756	Acanthochromis_polyacanthus
ENSGACG00000009468	smndc1	100	75.630	ENSAMEG00000005251	SMNDC1	100	75.630	Ailuropoda_melanoleuca
ENSGACG00000009468	smndc1	100	90.336	ENSACIG00000004819	smndc1	100	90.336	Amphilophus_citrinellus
ENSGACG00000009468	smndc1	100	90.336	ENSAOCG00000017869	smndc1	100	90.336	Amphiprion_ocellaris
ENSGACG00000009468	smndc1	100	90.336	ENSAPEG00000007752	smndc1	100	90.336	Amphiprion_percula
ENSGACG00000009468	smndc1	100	91.176	ENSATEG00000006830	smndc1	100	91.176	Anabas_testudineus
ENSGACG00000009468	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSGACG00000009468	smndc1	100	75.210	ENSACAG00000005983	SMNDC1	100	75.210	Anolis_carolinensis
ENSGACG00000009468	smndc1	100	75.630	ENSANAG00000032875	SMNDC1	100	75.630	Aotus_nancymaae
ENSGACG00000009468	smndc1	100	89.496	ENSACLG00000016360	smndc1	100	89.496	Astatotilapia_calliptera
ENSGACG00000009468	smndc1	100	81.513	ENSAMXG00000020310	smndc1	100	81.513	Astyanax_mexicanus
ENSGACG00000009468	smndc1	100	75.630	ENSBTAG00000000551	SMNDC1	100	75.630	Bos_taurus
ENSGACG00000009468	smndc1	100	75.630	ENSCJAG00000018624	SMNDC1	100	75.630	Callithrix_jacchus
ENSGACG00000009468	smndc1	100	75.630	ENSCAFG00000010720	SMNDC1	100	75.630	Canis_familiaris
ENSGACG00000009468	smndc1	100	75.630	ENSCAFG00020011913	SMNDC1	100	75.630	Canis_lupus_dingo
ENSGACG00000009468	smndc1	100	75.630	ENSCHIG00000010604	SMNDC1	100	75.630	Capra_hircus
ENSGACG00000009468	smndc1	100	75.630	ENSTSYG00000026454	SMNDC1	100	75.630	Carlito_syrichta
ENSGACG00000009468	smndc1	100	62.083	ENSCAPG00000009132	SMNDC1	100	72.139	Cavia_aperea
ENSGACG00000009468	smndc1	100	75.630	ENSCPOG00000031666	SMNDC1	100	75.630	Cavia_porcellus
ENSGACG00000009468	smndc1	100	75.630	ENSCCAG00000021793	SMNDC1	100	75.630	Cebus_capucinus
ENSGACG00000009468	smndc1	100	75.210	ENSCATG00000035910	SMNDC1	100	75.210	Cercocebus_atys
ENSGACG00000009468	smndc1	100	75.630	ENSCLAG00000002838	SMNDC1	100	75.630	Chinchilla_lanigera
ENSGACG00000009468	smndc1	100	75.630	ENSCSAG00000005169	SMNDC1	100	75.630	Chlorocebus_sabaeus
ENSGACG00000009468	smndc1	81	70.984	ENSCHOG00000002936	SMNDC1	100	70.984	Choloepus_hoffmanni
ENSGACG00000009468	smndc1	100	76.050	ENSCPBG00000012837	SMNDC1	100	76.050	Chrysemys_picta_bellii
ENSGACG00000009468	smndc1	100	75.630	ENSCANG00000031720	-	100	75.630	Colobus_angolensis_palliatus
ENSGACG00000009468	smndc1	100	58.403	ENSCANG00000036994	-	100	58.403	Colobus_angolensis_palliatus
ENSGACG00000009468	smndc1	100	69.748	ENSCANG00000034620	-	100	69.748	Colobus_angolensis_palliatus
ENSGACG00000009468	smndc1	100	75.210	ENSCGRG00001012973	Smndc1	100	75.210	Cricetulus_griseus_chok1gshd
ENSGACG00000009468	smndc1	100	75.210	ENSCGRG00000012396	Smndc1	100	75.210	Cricetulus_griseus_crigri
ENSGACG00000009468	smndc1	100	85.294	ENSCSEG00000015621	smndc1	100	85.294	Cynoglossus_semilaevis
ENSGACG00000009468	smndc1	100	85.714	ENSCVAG00000020432	smndc1	100	85.714	Cyprinodon_variegatus
ENSGACG00000009468	smndc1	100	81.590	ENSDARG00000056235	smndc1	100	81.590	Danio_rerio
ENSGACG00000009468	smndc1	100	75.630	ENSDNOG00000016387	SMNDC1	83	75.630	Dasypus_novemcinctus
ENSGACG00000009468	smndc1	100	75.630	ENSDORG00000023715	Smndc1	100	75.630	Dipodomys_ordii
ENSGACG00000009468	smndc1	97	42.688	FBgn0039977	CG17454	98	43.478	Drosophila_melanogaster
ENSGACG00000009468	smndc1	100	66.390	ENSEBUG00000010929	smndc1	100	67.635	Eptatretus_burgeri
ENSGACG00000009468	smndc1	100	75.630	ENSEASG00005014930	SMNDC1	100	75.630	Equus_asinus_asinus
ENSGACG00000009468	smndc1	100	75.630	ENSECAG00000029973	SMNDC1	100	75.630	Equus_caballus
ENSGACG00000009468	smndc1	83	53.030	ENSEEUG00000013407	-	100	53.030	Erinaceus_europaeus
ENSGACG00000009468	smndc1	100	85.714	ENSELUG00000000227	smndc1	100	85.714	Esox_lucius
ENSGACG00000009468	smndc1	100	75.630	ENSFCAG00000027353	SMNDC1	100	75.630	Felis_catus
ENSGACG00000009468	smndc1	100	76.050	ENSFALG00000002306	SMNDC1	100	76.050	Ficedula_albicollis
ENSGACG00000009468	smndc1	100	76.050	ENSFDAG00000006468	SMNDC1	100	76.050	Fukomys_damarensis
ENSGACG00000009468	smndc1	100	87.395	ENSFHEG00000020150	smndc1	100	87.395	Fundulus_heteroclitus
ENSGACG00000009468	smndc1	100	85.714	ENSGMOG00000016585	smndc1	100	85.714	Gadus_morhua
ENSGACG00000009468	smndc1	100	76.050	ENSGALG00000008561	SMNDC1	100	76.050	Gallus_gallus
ENSGACG00000009468	smndc1	100	87.815	ENSGAFG00000011582	smndc1	100	87.815	Gambusia_affinis
ENSGACG00000009468	smndc1	100	76.050	ENSGAGG00000024547	SMNDC1	100	76.050	Gopherus_agassizii
ENSGACG00000009468	smndc1	100	75.630	ENSGGOG00000010071	SMNDC1	100	75.630	Gorilla_gorilla
ENSGACG00000009468	smndc1	100	89.496	ENSHBUG00000017596	smndc1	100	89.496	Haplochromis_burtoni
ENSGACG00000009468	smndc1	100	76.050	ENSHGLG00000013390	-	100	76.050	Heterocephalus_glaber_female
ENSGACG00000009468	smndc1	100	55.102	ENSHGLG00000001157	-	100	55.102	Heterocephalus_glaber_female
ENSGACG00000009468	smndc1	100	76.050	ENSHGLG00100004814	-	100	76.050	Heterocephalus_glaber_male
ENSGACG00000009468	smndc1	100	60.408	ENSHGLG00100004278	-	100	59.839	Heterocephalus_glaber_male
ENSGACG00000009468	smndc1	100	84.100	ENSHCOG00000000783	smndc1	100	84.100	Hippocampus_comes
ENSGACG00000009468	smndc1	100	82.773	ENSIPUG00000004217	smndc1	100	82.773	Ictalurus_punctatus
ENSGACG00000009468	smndc1	100	75.630	ENSSTOG00000006088	SMNDC1	100	75.630	Ictidomys_tridecemlineatus
ENSGACG00000009468	smndc1	100	75.630	ENSJJAG00000019974	Smndc1	100	75.630	Jaculus_jaculus
ENSGACG00000009468	smndc1	100	86.134	ENSKMAG00000020134	smndc1	100	86.134	Kryptolebias_marmoratus
ENSGACG00000009468	smndc1	100	89.496	ENSLBEG00000004598	smndc1	100	89.496	Labrus_bergylta
ENSGACG00000009468	smndc1	100	75.210	ENSLACG00000007784	SMNDC1	100	75.210	Latimeria_chalumnae
ENSGACG00000009468	smndc1	100	82.773	ENSLOCG00000012355	smndc1	100	82.773	Lepisosteus_oculatus
ENSGACG00000009468	smndc1	100	75.210	ENSLAFG00000014353	SMNDC1	100	75.210	Loxodonta_africana
ENSGACG00000009468	smndc1	100	62.605	ENSMFAG00000038381	-	100	62.605	Macaca_fascicularis
ENSGACG00000009468	smndc1	100	75.630	ENSMFAG00000002433	-	100	75.630	Macaca_fascicularis
ENSGACG00000009468	smndc1	100	62.605	ENSMMUG00000045875	-	100	62.605	Macaca_mulatta
ENSGACG00000009468	smndc1	100	75.630	ENSMMUG00000007775	SMNDC1	100	75.630	Macaca_mulatta
ENSGACG00000009468	smndc1	100	75.630	ENSMNEG00000042963	-	100	75.630	Macaca_nemestrina
ENSGACG00000009468	smndc1	100	67.227	ENSMNEG00000033853	-	100	67.227	Macaca_nemestrina
ENSGACG00000009468	smndc1	100	71.074	ENSMLEG00000040236	SMNDC1	100	70.711	Mandrillus_leucophaeus
ENSGACG00000009468	smndc1	89	86.854	ENSMAMG00000018233	smndc1	87	86.854	Mastacembelus_armatus
ENSGACG00000009468	smndc1	100	89.496	ENSMZEG00005027510	smndc1	100	89.496	Maylandia_zebra
ENSGACG00000009468	smndc1	99	67.932	ENSMGAG00000010777	SMNDC1	84	76.000	Meleagris_gallopavo
ENSGACG00000009468	smndc1	99	62.025	ENSMAUG00000005459	-	93	62.447	Mesocricetus_auratus
ENSGACG00000009468	smndc1	100	75.630	ENSMAUG00000012243	-	100	75.630	Mesocricetus_auratus
ENSGACG00000009468	smndc1	100	75.210	ENSMICG00000027336	-	100	75.210	Microcebus_murinus
ENSGACG00000009468	smndc1	100	65.546	ENSMICG00000031640	-	100	65.546	Microcebus_murinus
ENSGACG00000009468	smndc1	100	75.210	ENSMOCG00000002458	Smndc1	100	75.210	Microtus_ochrogaster
ENSGACG00000009468	smndc1	100	87.815	ENSMMOG00000008856	smndc1	100	87.815	Mola_mola
ENSGACG00000009468	smndc1	100	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSGACG00000009468	smndc1	100	88.655	ENSMALG00000017598	smndc1	100	88.655	Monopterus_albus
ENSGACG00000009468	smndc1	100	75.630	MGP_CAROLIEiJ_G0023072	Smndc1	100	75.630	Mus_caroli
ENSGACG00000009468	smndc1	100	75.630	ENSMUSG00000025024	Smndc1	100	75.630	Mus_musculus
ENSGACG00000009468	smndc1	100	75.630	MGP_PahariEiJ_G0014560	Smndc1	100	75.630	Mus_pahari
ENSGACG00000009468	smndc1	100	75.630	MGP_SPRETEiJ_G0023993	Smndc1	100	75.630	Mus_spretus
ENSGACG00000009468	smndc1	100	75.630	ENSMPUG00000002089	SMNDC1	100	75.630	Mustela_putorius_furo
ENSGACG00000009468	smndc1	100	75.630	ENSMLUG00000016007	SMNDC1	100	75.630	Myotis_lucifugus
ENSGACG00000009468	smndc1	100	76.569	ENSNGAG00000006833	Smndc1	100	76.569	Nannospalax_galili
ENSGACG00000009468	smndc1	100	89.496	ENSNBRG00000017089	smndc1	100	89.496	Neolamprologus_brichardi
ENSGACG00000009468	smndc1	100	75.630	ENSNLEG00000015471	SMNDC1	100	75.630	Nomascus_leucogenys
ENSGACG00000009468	smndc1	70	58.434	ENSMEUG00000010120	-	98	54.229	Notamacropus_eugenii
ENSGACG00000009468	smndc1	100	75.630	ENSOPRG00000015348	SMNDC1	100	75.630	Ochotona_princeps
ENSGACG00000009468	smndc1	100	54.622	ENSODEG00000007594	-	100	52.941	Octodon_degus
ENSGACG00000009468	smndc1	100	89.496	ENSONIG00000000434	smndc1	100	89.496	Oreochromis_niloticus
ENSGACG00000009468	smndc1	100	76.471	ENSOANG00000001598	SMNDC1	100	76.471	Ornithorhynchus_anatinus
ENSGACG00000009468	smndc1	100	75.630	ENSOCUG00000008145	-	100	75.630	Oryctolagus_cuniculus
ENSGACG00000009468	smndc1	100	56.303	ENSOCUG00000012274	-	100	57.563	Oryctolagus_cuniculus
ENSGACG00000009468	smndc1	100	81.092	ENSORLG00000005934	smndc1	95	81.092	Oryzias_latipes
ENSGACG00000009468	smndc1	100	81.092	ENSORLG00020008796	smndc1	95	81.092	Oryzias_latipes_hni
ENSGACG00000009468	smndc1	100	81.092	ENSORLG00015013666	smndc1	100	81.092	Oryzias_latipes_hsok
ENSGACG00000009468	smndc1	100	78.992	ENSOMEG00000007590	smndc1	100	78.992	Oryzias_melastigma
ENSGACG00000009468	smndc1	100	75.630	ENSOGAG00000000571	SMNDC1	100	75.630	Otolemur_garnettii
ENSGACG00000009468	smndc1	100	75.630	ENSOARG00000009500	SMNDC1	100	75.630	Ovis_aries
ENSGACG00000009468	smndc1	100	75.630	ENSPPAG00000027815	SMNDC1	100	75.630	Pan_paniscus
ENSGACG00000009468	smndc1	100	75.630	ENSPPRG00000013749	SMNDC1	100	75.630	Panthera_pardus
ENSGACG00000009468	smndc1	100	75.630	ENSPTIG00000011451	SMNDC1	100	75.630	Panthera_tigris_altaica
ENSGACG00000009468	smndc1	100	75.630	ENSPTRG00000002937	SMNDC1	100	75.630	Pan_troglodytes
ENSGACG00000009468	smndc1	100	75.630	ENSPANG00000020805	-	100	75.630	Papio_anubis
ENSGACG00000009468	smndc1	100	71.008	ENSPANG00000031346	-	100	71.008	Papio_anubis
ENSGACG00000009468	smndc1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSGACG00000009468	smndc1	100	76.471	ENSPSIG00000012257	SMNDC1	100	76.471	Pelodiscus_sinensis
ENSGACG00000009468	smndc1	100	82.353	ENSPMGG00000015651	smndc1	100	82.353	Periophthalmus_magnuspinnatus
ENSGACG00000009468	smndc1	100	75.630	ENSPEMG00000022058	Smndc1	100	75.630	Peromyscus_maniculatus_bairdii
ENSGACG00000009468	smndc1	100	66.122	ENSPMAG00000007705	smndc1	100	66.122	Petromyzon_marinus
ENSGACG00000009468	smndc1	100	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSGACG00000009468	smndc1	95	57.522	ENSPCIG00000009693	-	98	57.522	Phascolarctos_cinereus
ENSGACG00000009468	smndc1	100	87.395	ENSPFOG00000017113	smndc1	100	87.395	Poecilia_formosa
ENSGACG00000009468	smndc1	100	87.395	ENSPLAG00000010372	smndc1	100	87.395	Poecilia_latipinna
ENSGACG00000009468	smndc1	100	87.395	ENSPMEG00000012288	smndc1	100	87.395	Poecilia_mexicana
ENSGACG00000009468	smndc1	100	86.134	ENSPREG00000012279	smndc1	100	86.134	Poecilia_reticulata
ENSGACG00000009468	smndc1	100	75.630	ENSPPYG00000002643	SMNDC1	100	75.630	Pongo_abelii
ENSGACG00000009468	smndc1	81	70.466	ENSPCAG00000016183	SMNDC1	100	70.466	Procavia_capensis
ENSGACG00000009468	smndc1	100	75.210	ENSPCOG00000024343	SMNDC1	100	75.210	Propithecus_coquereli
ENSGACG00000009468	smndc1	100	59.244	ENSPVAG00000004368	SMNDC1	100	59.244	Pteropus_vampyrus
ENSGACG00000009468	smndc1	83	89.899	ENSPNYG00000024093	smndc1	86	89.899	Pundamilia_nyererei
ENSGACG00000009468	smndc1	100	80.672	ENSPNAG00000025285	smndc1	100	80.672	Pygocentrus_nattereri
ENSGACG00000009468	smndc1	100	75.630	ENSRNOG00000014833	Smndc1	100	75.630	Rattus_norvegicus
ENSGACG00000009468	smndc1	100	61.765	ENSRBIG00000032452	-	100	61.765	Rhinopithecus_bieti
ENSGACG00000009468	smndc1	100	75.210	ENSRBIG00000000224	-	100	75.210	Rhinopithecus_bieti
ENSGACG00000009468	smndc1	100	61.765	ENSRROG00000039125	-	100	61.765	Rhinopithecus_roxellana
ENSGACG00000009468	smndc1	100	75.630	ENSRROG00000044992	-	100	75.630	Rhinopithecus_roxellana
ENSGACG00000009468	smndc1	100	75.630	ENSSBOG00000026789	SMNDC1	100	75.630	Saimiri_boliviensis_boliviensis
ENSGACG00000009468	smndc1	100	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSGACG00000009468	smndc1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSGACG00000009468	smndc1	100	91.176	ENSSMAG00000020118	smndc1	100	91.176	Scophthalmus_maximus
ENSGACG00000009468	smndc1	100	91.176	ENSSDUG00000015330	smndc1	100	91.176	Seriola_dumerili
ENSGACG00000009468	smndc1	100	91.176	ENSSLDG00000017325	smndc1	100	91.176	Seriola_lalandi_dorsalis
ENSGACG00000009468	smndc1	100	75.630	ENSSARG00000006063	SMNDC1	100	75.630	Sorex_araneus
ENSGACG00000009468	smndc1	100	75.630	ENSSPUG00000004574	SMNDC1	100	75.630	Sphenodon_punctatus
ENSGACG00000009468	smndc1	100	89.916	ENSSPAG00000000338	smndc1	100	89.916	Stegastes_partitus
ENSGACG00000009468	smndc1	100	75.630	ENSSSCG00000030507	SMNDC1	100	75.630	Sus_scrofa
ENSGACG00000009468	smndc1	100	76.050	ENSTGUG00000010599	SMNDC1	100	76.050	Taeniopygia_guttata
ENSGACG00000009468	smndc1	100	84.454	ENSTRUG00000023281	smndc1	100	84.454	Takifugu_rubripes
ENSGACG00000009468	smndc1	100	84.034	ENSTNIG00000013331	smndc1	100	84.034	Tetraodon_nigroviridis
ENSGACG00000009468	smndc1	100	75.630	ENSTBEG00000014337	SMNDC1	100	75.630	Tupaia_belangeri
ENSGACG00000009468	smndc1	100	75.630	ENSUAMG00000008142	SMNDC1	100	75.630	Ursus_americanus
ENSGACG00000009468	smndc1	100	75.630	ENSUMAG00000023722	SMNDC1	100	75.630	Ursus_maritimus
ENSGACG00000009468	smndc1	83	74.747	ENSVPAG00000003402	SMNDC1	100	74.747	Vicugna_pacos
ENSGACG00000009468	smndc1	100	75.630	ENSVVUG00000007820	SMNDC1	100	75.630	Vulpes_vulpes
ENSGACG00000009468	smndc1	60	62.676	ENSXETG00000015415	SMNDC1	100	62.676	Xenopus_tropicalis
ENSGACG00000009468	smndc1	100	86.555	ENSXCOG00000009159	smndc1	100	86.555	Xiphophorus_couchianus
ENSGACG00000009468	smndc1	100	87.395	ENSXMAG00000012755	smndc1	100	87.395	Xiphophorus_maculatus