EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000009601 (Gene tree)
Gene ID: -
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 8343 bases
Position: chrgroupXX:11384921-11393263
Accession: ZDB-GENE-010601-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000012679	Val_tRNA-synt_C	PF10458.9	6.3e-06	1	1
ENSGACP00000012679	tRNA-synt_1g	PF09334.11	8.4e-12	1	1
ENSGACP00000012679	Anticodon_1	PF08264.13	1.3e-36	1	1
ENSGACP00000012679	tRNA-synt_1	PF00133.22	8e-207	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000012703	-	3717	-	ENSGACP00000012679	1222 (aa)	-	G3P506

Gene Model

Click here to download ENSGACG00000009601's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000009601's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000009601	vars	79	50.256	ENSGACG00000001464	vars2	97	50.360

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000009601	vars	98	65.917	ENSG00000204394	VARS	99	70.245	Homo_sapiens
ENSGACG00000009601	vars	94	86.473	ENSAPOG00000020921	vars	89	90.617	Acanthochromis_polyacanthus
ENSGACG00000009601	vars	94	86.473	ENSAPOG00000020691	vars	89	90.617	Acanthochromis_polyacanthus
ENSGACG00000009601	vars	98	66.195	ENSAMEG00000006417	VARS	92	66.611	Ailuropoda_melanoleuca
ENSGACG00000009601	vars	99	88.182	ENSACIG00000013752	vars	93	88.852	Amphilophus_citrinellus
ENSGACG00000009601	vars	100	87.079	ENSAOCG00000002447	vars	92	90.932	Amphiprion_ocellaris
ENSGACG00000009601	vars	100	87.001	ENSAPEG00000010638	vars	92	90.848	Amphiprion_percula
ENSGACG00000009601	vars	100	83.099	ENSATEG00000020219	vars	93	86.745	Anabas_testudineus
ENSGACG00000009601	vars	89	69.694	ENSACAG00000029133	-	92	73.938	Anolis_carolinensis
ENSGACG00000009601	vars	98	65.667	ENSANAG00000015453	VARS	92	65.998	Aotus_nancymaae
ENSGACG00000009601	vars	100	86.228	ENSACLG00000025699	vars	90	90.596	Astatotilapia_calliptera
ENSGACG00000009601	vars	96	77.641	ENSAMXG00000017716	vars	96	76.986	Astyanax_mexicanus
ENSGACG00000009601	vars	98	65.833	ENSBTAG00000005631	VARS	92	66.165	Bos_taurus
ENSGACG00000009601	vars	98	65.667	ENSCJAG00000002604	VARS	92	65.998	Callithrix_jacchus
ENSGACG00000009601	vars	98	66.000	ENSCAFG00000000636	VARS	92	66.416	Canis_familiaris
ENSGACG00000009601	vars	91	67.500	ENSCAFG00020020790	VARS	88	67.950	Canis_lupus_dingo
ENSGACG00000009601	vars	98	65.917	ENSCHIG00000011008	VARS	93	66.249	Capra_hircus
ENSGACG00000009601	vars	98	65.417	ENSTSYG00000001567	VARS	92	65.748	Carlito_syrichta
ENSGACG00000009601	vars	95	67.155	ENSCAPG00000013736	VARS	98	66.926	Cavia_aperea
ENSGACG00000009601	vars	98	65.890	ENSCPOG00000000870	VARS	92	65.858	Cavia_porcellus
ENSGACG00000009601	vars	98	65.917	ENSCCAG00000035656	VARS	100	58.128	Cebus_capucinus
ENSGACG00000009601	vars	98	66.333	ENSCATG00000022394	VARS	92	66.500	Cercocebus_atys
ENSGACG00000009601	vars	94	64.492	ENSCLAG00000009470	VARS	93	64.268	Chinchilla_lanigera
ENSGACG00000009601	vars	98	66.167	ENSCSAG00000008784	VARS	92	66.332	Chlorocebus_sabaeus
ENSGACG00000009601	vars	80	73.873	ENSCPBG00000007943	VARS	96	73.873	Chrysemys_picta_bellii
ENSGACG00000009601	vars	98	66.333	ENSCANG00000033570	VARS	92	66.500	Colobus_angolensis_palliatus
ENSGACG00000009601	vars	98	66.000	ENSCGRG00001005686	Vars	93	65.755	Cricetulus_griseus_chok1gshd
ENSGACG00000009601	vars	97	62.120	ENSCGRG00000013352	Vars	78	62.193	Cricetulus_griseus_crigri
ENSGACG00000009601	vars	100	79.624	ENSCSEG00000019652	vars	93	83.179	Cynoglossus_semilaevis
ENSGACG00000009601	vars	100	84.898	ENSCVAG00000022398	vars	93	89.001	Cyprinodon_variegatus
ENSGACG00000009601	vars	100	81.211	ENSDARG00000044575	vars	100	80.896	Danio_rerio
ENSGACG00000009601	vars	85	69.990	ENSDORG00000016433	Vars	93	70.086	Dipodomys_ordii
ENSGACG00000009601	vars	72	73.056	ENSETEG00000003824	VARS	77	73.056	Echinops_telfairi
ENSGACG00000009601	vars	53	73.043	ENSEBUG00000007086	vars	82	73.043	Eptatretus_burgeri
ENSGACG00000009601	vars	60	64.835	ENSEBUG00000004637	vars	100	64.835	Eptatretus_burgeri
ENSGACG00000009601	vars	98	66.250	ENSEASG00005015673	VARS	92	66.583	Equus_asinus_asinus
ENSGACG00000009601	vars	98	66.195	ENSECAG00000014620	VARS	92	66.611	Equus_caballus
ENSGACG00000009601	vars	75	70.927	ENSEEUG00000004116	VARS	73	70.927	Erinaceus_europaeus
ENSGACG00000009601	vars	100	81.235	ENSELUG00000006550	vars	93	91.667	Esox_lucius
ENSGACG00000009601	vars	98	66.083	ENSFCAG00000004510	VARS	92	66.416	Felis_catus
ENSGACG00000009601	vars	87	69.102	ENSFDAG00000011401	VARS	100	68.942	Fukomys_damarensis
ENSGACG00000009601	vars	100	83.803	ENSFHEG00000010672	vars	93	87.909	Fundulus_heteroclitus
ENSGACG00000009601	vars	100	84.647	ENSGMOG00000014908	vars	100	85.215	Gadus_morhua
ENSGACG00000009601	vars	100	84.272	ENSGAFG00000021630	vars	100	84.038	Gambusia_affinis
ENSGACG00000009601	vars	98	66.167	ENSGGOG00000011364	VARS	92	66.332	Gorilla_gorilla
ENSGACG00000009601	vars	100	86.307	ENSHBUG00000017151	vars	90	90.680	Haplochromis_burtoni
ENSGACG00000009601	vars	98	65.388	ENSHGLG00000011646	VARS	92	65.743	Heterocephalus_glaber_female
ENSGACG00000009601	vars	98	60.391	ENSHGLG00100018062	VARS	99	60.623	Heterocephalus_glaber_male
ENSGACG00000009601	vars	99	81.554	ENSHCOG00000012198	vars	93	85.859	Hippocampus_comes
ENSGACG00000009601	vars	100	80.926	ENSIPUG00000005218	vars	100	80.612	Ictalurus_punctatus
ENSGACG00000009601	vars	98	66.417	ENSSTOG00000013112	VARS	92	66.639	Ictidomys_tridecemlineatus
ENSGACG00000009601	vars	98	65.362	ENSJJAG00000019749	-	92	65.520	Jaculus_jaculus
ENSGACG00000009601	vars	98	54.667	ENSJJAG00000015343	-	100	52.038	Jaculus_jaculus
ENSGACG00000009601	vars	100	81.882	ENSKMAG00000009455	vars	93	85.450	Kryptolebias_marmoratus
ENSGACG00000009601	vars	100	83.588	ENSLBEG00000010341	vars	93	87.429	Labrus_bergylta
ENSGACG00000009601	vars	94	64.914	ENSLACG00000015232	VARS	92	68.695	Latimeria_chalumnae
ENSGACG00000009601	vars	100	72.971	ENSLOCG00000004240	vars	100	73.286	Lepisosteus_oculatus
ENSGACG00000009601	vars	98	65.638	ENSLAFG00000023090	VARS	92	65.995	Loxodonta_africana
ENSGACG00000009601	vars	98	66.167	ENSMFAG00000001032	VARS	92	66.332	Macaca_fascicularis
ENSGACG00000009601	vars	98	66.167	ENSMMUG00000006828	VARS	92	66.332	Macaca_mulatta
ENSGACG00000009601	vars	98	66.167	ENSMNEG00000042072	VARS	92	66.332	Macaca_nemestrina
ENSGACG00000009601	vars	98	66.250	ENSMLEG00000039307	VARS	92	66.416	Mandrillus_leucophaeus
ENSGACG00000009601	vars	100	86.531	ENSMAMG00000003949	vars	93	90.512	Mastacembelus_armatus
ENSGACG00000009601	vars	100	86.385	ENSMZEG00005018327	vars	90	90.764	Maylandia_zebra
ENSGACG00000009601	vars	98	65.583	ENSMAUG00000006715	Vars	92	65.998	Mesocricetus_auratus
ENSGACG00000009601	vars	98	65.583	ENSMICG00000003548	VARS	100	58.374	Microcebus_murinus
ENSGACG00000009601	vars	98	64.887	ENSMOCG00000015404	Vars	92	65.239	Microtus_ochrogaster
ENSGACG00000009601	vars	100	83.164	ENSMMOG00000015801	vars	100	82.616	Mola_mola
ENSGACG00000009601	vars	97	66.527	ENSMODG00000015204	-	92	66.359	Monodelphis_domestica
ENSGACG00000009601	vars	99	86.755	ENSMALG00000022532	vars	99	86.207	Monopterus_albus
ENSGACG00000009601	vars	98	66.222	MGP_CAROLIEiJ_G0021491	Vars	92	66.583	Mus_caroli
ENSGACG00000009601	vars	98	66.138	ENSMUSG00000007029	Vars	92	66.499	Mus_musculus
ENSGACG00000009601	vars	98	66.055	MGP_PahariEiJ_G0020486	Vars	92	66.415	Mus_pahari
ENSGACG00000009601	vars	98	66.222	MGP_SPRETEiJ_G0022396	Vars	92	66.583	Mus_spretus
ENSGACG00000009601	vars	98	65.833	ENSMPUG00000010821	VARS	92	66.249	Mustela_putorius_furo
ENSGACG00000009601	vars	75	70.000	ENSMLUG00000013126	VARS	90	70.229	Myotis_lucifugus
ENSGACG00000009601	vars	98	65.945	ENSNGAG00000012151	Vars	92	66.303	Nannospalax_galili
ENSGACG00000009601	vars	100	86.072	ENSNBRG00000020520	vars	93	90.428	Neolamprologus_brichardi
ENSGACG00000009601	vars	98	66.000	ENSNLEG00000006351	VARS	92	66.332	Nomascus_leucogenys
ENSGACG00000009601	vars	91	70.884	ENSMEUG00000011378	VARS	92	64.232	Notamacropus_eugenii
ENSGACG00000009601	vars	98	66.028	ENSOPRG00000003607	VARS	92	66.165	Ochotona_princeps
ENSGACG00000009601	vars	97	65.494	ENSODEG00000017681	VARS	93	64.883	Octodon_degus
ENSGACG00000009601	vars	100	85.280	ENSONIG00000013064	vars	100	90.609	Oreochromis_niloticus
ENSGACG00000009601	vars	76	67.268	ENSOANG00000005400	VARS	98	67.268	Ornithorhynchus_anatinus
ENSGACG00000009601	vars	98	64.417	ENSOCUG00000022463	VARS	92	64.987	Oryctolagus_cuniculus
ENSGACG00000009601	vars	100	83.645	ENSORLG00000013063	vars	93	87.312	Oryzias_latipes
ENSGACG00000009601	vars	100	84.116	ENSORLG00020003504	vars	93	87.752	Oryzias_latipes_hni
ENSGACG00000009601	vars	100	84.260	ENSORLG00015009001	vars	93	87.909	Oryzias_latipes_hsok
ENSGACG00000009601	vars	100	84.338	ENSOMEG00000015016	vars	93	88.161	Oryzias_melastigma
ENSGACG00000009601	vars	98	65.917	ENSOGAG00000007515	VARS	92	65.998	Otolemur_garnettii
ENSGACG00000009601	vars	98	66.000	ENSPPAG00000034012	VARS	92	66.332	Pan_paniscus
ENSGACG00000009601	vars	98	66.083	ENSPPRG00000014855	VARS	92	66.416	Panthera_pardus
ENSGACG00000009601	vars	90	67.909	ENSPTIG00000010462	VARS	93	68.120	Panthera_tigris_altaica
ENSGACG00000009601	vars	98	65.917	ENSPTRG00000017985	VARS	92	66.249	Pan_troglodytes
ENSGACG00000009601	vars	98	64.652	ENSPANG00000014565	VARS	92	64.813	Papio_anubis
ENSGACG00000009601	vars	100	79.421	ENSPKIG00000016304	vars	100	79.421	Paramormyrops_kingsleyae
ENSGACG00000009601	vars	100	81.020	ENSPMGG00000023909	vars	93	84.861	Periophthalmus_magnuspinnatus
ENSGACG00000009601	vars	98	65.417	ENSPEMG00000006639	Vars	92	65.831	Peromyscus_maniculatus_bairdii
ENSGACG00000009601	vars	97	65.772	ENSPCIG00000018553	VARS	92	65.690	Phascolarctos_cinereus
ENSGACG00000009601	vars	100	84.272	ENSPFOG00000015690	vars	100	84.038	Poecilia_formosa
ENSGACG00000009601	vars	100	84.116	ENSPLAG00000009590	vars	100	83.881	Poecilia_latipinna
ENSGACG00000009601	vars	100	84.272	ENSPMEG00000004708	vars	100	84.038	Poecilia_mexicana
ENSGACG00000009601	vars	100	79.656	ENSPREG00000013264	vars	99	90.853	Poecilia_reticulata
ENSGACG00000009601	vars	98	64.500	ENSPPYG00000016460	VARS	92	64.662	Pongo_abelii
ENSGACG00000009601	vars	83	65.062	ENSPCAG00000013565	VARS	78	65.062	Procavia_capensis
ENSGACG00000009601	vars	98	65.695	ENSPCOG00000010942	VARS	92	66.110	Propithecus_coquereli
ENSGACG00000009601	vars	98	63.478	ENSPVAG00000012403	VARS	92	63.933	Pteropus_vampyrus
ENSGACG00000009601	vars	100	86.385	ENSPNYG00000022511	vars	93	90.764	Pundamilia_nyererei
ENSGACG00000009601	vars	100	80.878	ENSPNAG00000020962	vars	100	80.564	Pygocentrus_nattereri
ENSGACG00000009601	vars	98	66.000	ENSRNOG00000000867	Vars	92	66.165	Rattus_norvegicus
ENSGACG00000009601	vars	98	66.250	ENSRBIG00000041669	VARS	92	66.416	Rhinopithecus_bieti
ENSGACG00000009601	vars	98	66.250	ENSRROG00000045490	VARS	92	66.416	Rhinopithecus_roxellana
ENSGACG00000009601	vars	98	65.750	ENSSBOG00000035402	VARS	92	66.082	Saimiri_boliviensis_boliviensis
ENSGACG00000009601	vars	95	67.530	ENSSHAG00000006937	VARS	90	67.442	Sarcophilus_harrisii
ENSGACG00000009601	vars	100	77.839	ENSSFOG00015014272	vars	100	77.839	Scleropages_formosus
ENSGACG00000009601	vars	100	85.591	ENSSMAG00000009596	vars	93	89.337	Scophthalmus_maximus
ENSGACG00000009601	vars	100	87.940	ENSSDUG00000014177	vars	93	91.856	Seriola_dumerili
ENSGACG00000009601	vars	100	87.627	ENSSLDG00000025316	vars	93	91.520	Seriola_lalandi_dorsalis
ENSGACG00000009601	vars	100	87.471	ENSSPAG00000017068	vars	93	91.436	Stegastes_partitus
ENSGACG00000009601	vars	98	65.196	ENSSSCG00000038950	VARS	92	65.609	Sus_scrofa
ENSGACG00000009601	vars	82	77.714	ENSTRUG00000012307	vars	98	77.040	Takifugu_rubripes
ENSGACG00000009601	vars	100	86.928	ENSTNIG00000008011	vars	100	86.928	Tetraodon_nigroviridis
ENSGACG00000009601	vars	98	59.450	ENSTTRG00000014128	VARS	92	59.765	Tursiops_truncatus
ENSGACG00000009601	vars	98	64.096	ENSUAMG00000010424	VARS	92	64.578	Ursus_americanus
ENSGACG00000009601	vars	98	60.483	ENSUMAG00000013486	VARS	92	60.921	Ursus_maritimus
ENSGACG00000009601	vars	98	66.140	ENSVVUG00000021323	VARS	94	64.346	Vulpes_vulpes
ENSGACG00000009601	vars	97	66.694	ENSXETG00000024076	vars	93	66.639	Xenopus_tropicalis
ENSGACG00000009601	vars	100	82.238	ENSXCOG00000019172	vars	93	86.146	Xiphophorus_couchianus
ENSGACG00000009601	vars	100	84.194	ENSXMAG00000010927	vars	100	83.959	Xiphophorus_maculatus