EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000009873 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 7508 bases
Position: chrgroupXVII:9969751-9977258
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000013043	RRM_1	PF00076.22	5.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000013068	-	842	-	ENSGACP00000013043	215 (aa)	-	G3P620

Gene Model

Click here to download ENSGACG00000009873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000009873's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000009873	-	97	63.677	ENSGACG00000008472	rbm24b	99	62.281
ENSGACG00000009873	-	100	68.349	ENSGACG00000015224	rbm38	99	68.349
ENSGACG00000009873	-	73	71.515	ENSGACG00000005383	rbm24a	99	63.111

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000009873	-	100	67.556	ENSG00000132819	RBM38	94	84.746	Homo_sapiens
ENSGACG00000009873	-	100	63.136	ENSAPOG00000003301	rbm38	93	63.136	Acanthochromis_polyacanthus
ENSGACG00000009873	-	100	87.097	ENSAPOG00000009939	-	94	87.097	Acanthochromis_polyacanthus
ENSGACG00000009873	-	100	62.605	ENSACIG00000000010	rbm38	93	62.605	Amphilophus_citrinellus
ENSGACG00000009873	-	100	89.862	ENSACIG00000012502	-	100	93.220	Amphilophus_citrinellus
ENSGACG00000009873	-	100	87.558	ENSAOCG00000012559	RBM38	95	86.161	Amphiprion_ocellaris
ENSGACG00000009873	-	100	63.136	ENSAOCG00000013497	-	93	63.136	Amphiprion_ocellaris
ENSGACG00000009873	-	100	66.818	ENSAPEG00000013137	rbm38	90	66.818	Amphiprion_percula
ENSGACG00000009873	-	100	86.087	ENSAPEG00000023581	-	94	86.087	Amphiprion_percula
ENSGACG00000009873	-	100	85.652	ENSATEG00000016710	-	94	85.652	Anabas_testudineus
ENSGACG00000009873	-	100	65.179	ENSATEG00000016366	rbm38	94	65.179	Anabas_testudineus
ENSGACG00000009873	-	100	67.265	ENSACAG00000016238	RBM38	90	66.667	Anolis_carolinensis
ENSGACG00000009873	-	100	68.444	ENSANAG00000031959	RBM38	81	88.000	Aotus_nancymaae
ENSGACG00000009873	-	100	84.348	ENSACLG00000019514	-	94	84.348	Astatotilapia_calliptera
ENSGACG00000009873	-	93	69.194	ENSAMXG00000038120	rbm38	89	69.194	Astyanax_mexicanus
ENSGACG00000009873	-	100	75.893	ENSAMXG00000015601	-	94	75.893	Astyanax_mexicanus
ENSGACG00000009873	-	100	67.411	ENSBTAG00000008105	RBM38	90	67.713	Bos_taurus
ENSGACG00000009873	-	56	62.602	WBGene00006321	sup-12	59	78.652	Caenorhabditis_elegans
ENSGACG00000009873	-	100	68.444	ENSCJAG00000019139	RBM38	81	88.000	Callithrix_jacchus
ENSGACG00000009873	-	100	68.304	ENSCAFG00020021943	RBM38	90	68.304	Canis_lupus_dingo
ENSGACG00000009873	-	100	65.919	ENSCHIG00000002609	RBM38	90	66.216	Capra_hircus
ENSGACG00000009873	-	100	67.556	ENSCPOG00000012781	RBM38	90	67.857	Cavia_porcellus
ENSGACG00000009873	-	100	68.444	ENSCCAG00000036872	RBM38	81	88.000	Cebus_capucinus
ENSGACG00000009873	-	100	66.816	ENSCATG00000032133	RBM38	81	88.000	Cercocebus_atys
ENSGACG00000009873	-	100	66.667	ENSCLAG00000005906	RBM38	93	66.518	Chinchilla_lanigera
ENSGACG00000009873	-	100	66.816	ENSCSAG00000015503	RBM38	90	67.117	Chlorocebus_sabaeus
ENSGACG00000009873	-	98	69.124	ENSCPBG00000024059	RBM38	98	68.056	Chrysemys_picta_bellii
ENSGACG00000009873	-	68	59.873	ENSCING00000025102	-	96	50.442	Ciona_intestinalis
ENSGACG00000009873	-	69	63.057	ENSCSAVG00000001132	-	56	63.158	Ciona_savignyi
ENSGACG00000009873	-	100	51.598	ENSCANG00000030105	-	79	50.685	Colobus_angolensis_palliatus
ENSGACG00000009873	-	100	65.625	ENSCGRG00001012928	Rbm38	91	65.919	Cricetulus_griseus_chok1gshd
ENSGACG00000009873	-	83	62.431	ENSCSEG00000020943	rbm38	60	65.934	Cynoglossus_semilaevis
ENSGACG00000009873	-	98	88.679	ENSCSEG00000004701	-	93	88.679	Cynoglossus_semilaevis
ENSGACG00000009873	-	100	57.384	ENSCVAG00000015952	rbm38	93	58.228	Cyprinodon_variegatus
ENSGACG00000009873	-	100	80.000	ENSCVAG00000005472	-	94	80.000	Cyprinodon_variegatus
ENSGACG00000009873	-	100	68.584	ENSDARG00000058818	rbm38	94	68.584	Danio_rerio
ENSGACG00000009873	-	100	67.873	ENSDNOG00000032004	RBM38	99	67.727	Dasypus_novemcinctus
ENSGACG00000009873	-	100	67.411	ENSECAG00000007700	RBM38	90	67.265	Equus_caballus
ENSGACG00000009873	-	100	65.487	ENSEEUG00000013489	RBM38	90	67.111	Erinaceus_europaeus
ENSGACG00000009873	-	100	79.221	ENSELUG00000005849	-	94	79.221	Esox_lucius
ENSGACG00000009873	-	95	62.222	ENSELUG00000000585	-	98	61.778	Esox_lucius
ENSGACG00000009873	-	100	66.816	ENSFCAG00000042916	RBM38	81	87.000	Felis_catus
ENSGACG00000009873	-	78	75.000	ENSFALG00000010805	RBM38	88	72.353	Ficedula_albicollis
ENSGACG00000009873	-	100	82.949	ENSFHEG00000006160	-	94	82.949	Fundulus_heteroclitus
ENSGACG00000009873	-	100	59.414	ENSFHEG00000017748	rbm38	93	59.414	Fundulus_heteroclitus
ENSGACG00000009873	-	84	84.865	ENSGMOG00000016655	-	99	82.162	Gadus_morhua
ENSGACG00000009873	-	98	69.725	ENSGALG00000026081	RBM38	98	69.124	Gallus_gallus
ENSGACG00000009873	-	98	69.585	ENSGAGG00000001187	RBM38	98	68.056	Gopherus_agassizii
ENSGACG00000009873	-	100	64.574	ENSHBUG00000012058	rbm38	91	64.574	Haplochromis_burtoni
ENSGACG00000009873	-	100	88.940	ENSHBUG00000011778	-	94	88.940	Haplochromis_burtoni
ENSGACG00000009873	-	100	64.286	ENSHGLG00000015077	RBM38	90	67.411	Heterocephalus_glaber_female
ENSGACG00000009873	-	92	84.000	ENSHCOG00000005622	-	56	84.000	Hippocampus_comes
ENSGACG00000009873	-	86	55.080	ENSHCOG00000019040	rbm38	72	55.191	Hippocampus_comes
ENSGACG00000009873	-	100	70.175	ENSIPUG00000019349	-	94	70.175	Ictalurus_punctatus
ENSGACG00000009873	-	97	56.034	ENSKMAG00000012402	rbm38	98	56.034	Kryptolebias_marmoratus
ENSGACG00000009873	-	100	63.713	ENSLBEG00000018878	rbm38	93	63.713	Labrus_bergylta
ENSGACG00000009873	-	100	89.401	ENSLBEG00000016163	RBM38	94	89.401	Labrus_bergylta
ENSGACG00000009873	-	100	74.661	ENSLOCG00000003456	rbm38	94	74.661	Lepisosteus_oculatus
ENSGACG00000009873	-	100	66.816	ENSMFAG00000043808	RBM38	81	88.000	Macaca_fascicularis
ENSGACG00000009873	-	100	66.816	ENSMMUG00000031391	RBM38	81	88.000	Macaca_mulatta
ENSGACG00000009873	-	100	66.816	ENSMNEG00000034683	RBM38	81	88.000	Macaca_nemestrina
ENSGACG00000009873	-	50	70.909	ENSMLEG00000043261	-	89	70.909	Mandrillus_leucophaeus
ENSGACG00000009873	-	100	63.713	ENSMAMG00000024135	rbm38	93	62.447	Mastacembelus_armatus
ENSGACG00000009873	-	100	86.087	ENSMAMG00000020499	RBM38	94	86.087	Mastacembelus_armatus
ENSGACG00000009873	-	100	61.765	ENSMZEG00005026036	rbm38	93	61.765	Maylandia_zebra
ENSGACG00000009873	-	100	88.940	ENSMZEG00005000849	-	94	88.940	Maylandia_zebra
ENSGACG00000009873	-	100	66.964	ENSMAUG00000021211	Rbm38	91	66.816	Mesocricetus_auratus
ENSGACG00000009873	-	100	68.444	ENSMICG00000038011	RBM38	99	68.304	Microcebus_murinus
ENSGACG00000009873	-	100	66.518	ENSMOCG00000008715	Rbm38	91	66.368	Microtus_ochrogaster
ENSGACG00000009873	-	100	86.636	ENSMMOG00000020051	-	94	86.087	Mola_mola
ENSGACG00000009873	-	98	68.981	ENSMODG00000016458	RBM38	90	67.281	Monodelphis_domestica
ENSGACG00000009873	-	98	58.605	ENSMALG00000022327	rbm38	91	60.360	Monopterus_albus
ENSGACG00000009873	-	84	91.209	ENSMALG00000004680	RBM38	69	91.209	Monopterus_albus
ENSGACG00000009873	-	100	63.839	MGP_CAROLIEiJ_G0024745	Rbm38	91	67.411	Mus_caroli
ENSGACG00000009873	-	100	63.839	ENSMUSG00000027510	Rbm38	91	67.411	Mus_musculus
ENSGACG00000009873	-	100	63.839	MGP_PahariEiJ_G0026186	Rbm38	91	67.411	Mus_pahari
ENSGACG00000009873	-	100	63.839	MGP_SPRETEiJ_G0025665	Rbm38	91	67.411	Mus_spretus
ENSGACG00000009873	-	84	71.809	ENSMPUG00000006518	RBM38	91	71.809	Mustela_putorius_furo
ENSGACG00000009873	-	100	66.368	ENSMLUG00000011140	RBM38	99	65.766	Myotis_lucifugus
ENSGACG00000009873	-	100	84.783	ENSNBRG00000022545	-	94	84.783	Neolamprologus_brichardi
ENSGACG00000009873	-	100	65.625	ENSNBRG00000022685	rbm38	91	65.625	Neolamprologus_brichardi
ENSGACG00000009873	-	53	76.923	ENSMEUG00000005475	-	86	76.923	Notamacropus_eugenii
ENSGACG00000009873	-	100	67.556	ENSODEG00000007980	RBM38	90	67.857	Octodon_degus
ENSGACG00000009873	-	100	62.185	ENSONIG00000017073	rbm38	95	62.185	Oreochromis_niloticus
ENSGACG00000009873	-	100	84.783	ENSONIG00000020324	-	95	84.783	Oreochromis_niloticus
ENSGACG00000009873	-	97	67.907	ENSOANG00000009259	RBM38	81	67.606	Ornithorhynchus_anatinus
ENSGACG00000009873	-	100	56.303	ENSORLG00000012154	rbm38	93	56.303	Oryzias_latipes
ENSGACG00000009873	-	100	79.741	ENSORLG00000027180	-	94	80.603	Oryzias_latipes
ENSGACG00000009873	-	100	79.741	ENSORLG00020020751	-	94	80.603	Oryzias_latipes_hni
ENSGACG00000009873	-	100	56.723	ENSORLG00020017871	rbm38	93	56.723	Oryzias_latipes_hni
ENSGACG00000009873	-	97	60.563	ENSORLG00015012606	rbm38	93	56.723	Oryzias_latipes_hsok
ENSGACG00000009873	-	100	80.952	ENSORLG00015017040	-	94	80.952	Oryzias_latipes_hsok
ENSGACG00000009873	-	100	81.739	ENSOMEG00000023912	-	94	82.174	Oryzias_melastigma
ENSGACG00000009873	-	97	58.442	ENSOMEG00000006805	rbm38	91	58.442	Oryzias_melastigma
ENSGACG00000009873	-	100	68.444	ENSOGAG00000029136	RBM38	90	68.750	Otolemur_garnettii
ENSGACG00000009873	-	100	66.816	ENSPPRG00000009507	RBM38	81	87.000	Panthera_pardus
ENSGACG00000009873	-	91	68.627	ENSPTRG00000013661	RBM38	81	88.000	Pan_troglodytes
ENSGACG00000009873	-	58	82.540	ENSPTRG00000045845	-	68	82.540	Pan_troglodytes
ENSGACG00000009873	-	100	66.816	ENSPANG00000020919	-	81	88.000	Papio_anubis
ENSGACG00000009873	-	100	53.363	ENSPANG00000033127	-	94	53.604	Papio_anubis
ENSGACG00000009873	-	100	67.391	ENSPKIG00000025417	rbm38	94	68.261	Paramormyrops_kingsleyae
ENSGACG00000009873	-	99	72.936	ENSPKIG00000018122	-	100	82.203	Paramormyrops_kingsleyae
ENSGACG00000009873	-	98	69.585	ENSPSIG00000011649	RBM38	91	68.056	Pelodiscus_sinensis
ENSGACG00000009873	-	100	76.923	ENSPMGG00000017094	-	94	76.923	Periophthalmus_magnuspinnatus
ENSGACG00000009873	-	97	62.771	ENSPMGG00000011343	rbm38	92	62.338	Periophthalmus_magnuspinnatus
ENSGACG00000009873	-	98	68.349	ENSPCIG00000013648	RBM38	90	67.281	Phascolarctos_cinereus
ENSGACG00000009873	-	100	56.667	ENSPFOG00000011658	rbm38	93	57.500	Poecilia_formosa
ENSGACG00000009873	-	100	57.261	ENSPLAG00000005218	rbm38	93	57.500	Poecilia_latipinna
ENSGACG00000009873	-	100	78.879	ENSPLAG00000002500	-	94	78.879	Poecilia_latipinna
ENSGACG00000009873	-	100	55.833	ENSPMEG00000015770	rbm38	93	57.500	Poecilia_mexicana
ENSGACG00000009873	-	100	56.667	ENSPREG00000007398	rbm38	93	57.500	Poecilia_reticulata
ENSGACG00000009873	-	100	68.000	ENSPCOG00000026201	RBM38	80	88.000	Propithecus_coquereli
ENSGACG00000009873	-	100	43.946	ENSPVAG00000006457	RBM38	90	43.694	Pteropus_vampyrus
ENSGACG00000009873	-	100	88.940	ENSPNYG00000019727	-	100	92.373	Pundamilia_nyererei
ENSGACG00000009873	-	100	63.229	ENSPNYG00000021373	rbm38	91	64.126	Pundamilia_nyererei
ENSGACG00000009873	-	100	74.554	ENSPNAG00000015123	-	98	79.104	Pygocentrus_nattereri
ENSGACG00000009873	-	93	70.813	ENSPNAG00000010596	rbm38	88	70.813	Pygocentrus_nattereri
ENSGACG00000009873	-	100	65.625	ENSRNOG00000006420	Rbm38	91	65.919	Rattus_norvegicus
ENSGACG00000009873	-	98	54.884	ENSRROG00000036388	-	87	54.884	Rhinopithecus_roxellana
ENSGACG00000009873	-	100	68.444	ENSSBOG00000031053	RBM38	92	88.000	Saimiri_boliviensis_boliviensis
ENSGACG00000009873	-	97	69.369	ENSSFOG00015004453	rbm38	92	71.946	Scleropages_formosus
ENSGACG00000009873	-	100	65.546	ENSSDUG00000022611	rbm38	93	65.546	Seriola_dumerili
ENSGACG00000009873	-	100	85.652	ENSSDUG00000021082	RBM38	94	85.652	Seriola_dumerili
ENSGACG00000009873	-	100	86.522	ENSSLDG00000011778	RBM38	94	86.522	Seriola_lalandi_dorsalis
ENSGACG00000009873	-	100	68.919	ENSSLDG00000010845	rbm38	92	68.919	Seriola_lalandi_dorsalis
ENSGACG00000009873	-	100	63.025	ENSSPAG00000011113	rbm38	93	63.025	Stegastes_partitus
ENSGACG00000009873	-	100	85.652	ENSSPAG00000020989	RBM38	94	85.652	Stegastes_partitus
ENSGACG00000009873	-	100	66.964	ENSSSCG00000007504	RBM38	90	67.265	Sus_scrofa
ENSGACG00000009873	-	100	62.661	ENSTRUG00000024954	rbm38	93	63.519	Takifugu_rubripes
ENSGACG00000009873	-	100	80.519	ENSTRUG00000019869	-	94	80.519	Takifugu_rubripes
ENSGACG00000009873	-	100	84.091	ENSTNIG00000007093	-	99	84.091	Tetraodon_nigroviridis
ENSGACG00000009873	-	100	67.411	ENSUAMG00000019780	RBM38	90	68.000	Ursus_americanus
ENSGACG00000009873	-	100	68.304	ENSVVUG00000017246	RBM38	90	68.304	Vulpes_vulpes
ENSGACG00000009873	-	98	65.297	ENSXETG00000011268	rbm38	97	63.761	Xenopus_tropicalis
ENSGACG00000009873	-	73	72.727	ENSXCOG00000017324	-	56	88.618	Xiphophorus_couchianus
ENSGACG00000009873	-	100	58.228	ENSXMAG00000023662	rbm38	93	59.072	Xiphophorus_maculatus