EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000010241 (Gene tree)
Gene ID: -
Gene Symbol: a1cf
Alias: acf
Full Name: apobec1 complementation factor
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 9519 bases
Position: chrgroupV:12143018-12152536
Accession: ZDB-GENE-060824-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000013531	DND1_DSRM	PF14709.7	5.7e-27	1	1
ENSGACP00000013531	RRM_1	PF00076.22	9.7e-40	1	3
ENSGACP00000013531	RRM_1	PF00076.22	9.7e-40	2	3
ENSGACP00000013531	RRM_1	PF00076.22	9.7e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000013556	-	1862	-	ENSGACP00000013531	596 (aa)	-	G3P7F7

Gene Model

Click here to download ENSGACG00000010241's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000010241's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000010241	a1cf	54	46.866	ENSGACG00000011665	syncrip	74	44.000
ENSGACG00000010241	a1cf	86	51.321	ENSGACG00000016223	rbm47	58	69.156

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000010241	a1cf	100	75.000	ENSG00000148584	A1CF	100	81.188	Homo_sapiens
ENSGACG00000010241	a1cf	100	81.789	ENSAPOG00000008259	a1cf	100	81.789	Acanthochromis_polyacanthus
ENSGACG00000010241	a1cf	100	73.849	ENSAMEG00000000523	A1CF	100	73.520	Ailuropoda_melanoleuca
ENSGACG00000010241	a1cf	100	84.228	ENSACIG00000008632	a1cf	100	85.366	Amphilophus_citrinellus
ENSGACG00000010241	a1cf	100	83.660	ENSAOCG00000023744	a1cf	100	84.477	Amphiprion_ocellaris
ENSGACG00000010241	a1cf	100	84.804	ENSAPEG00000009537	a1cf	100	85.621	Amphiprion_percula
ENSGACG00000010241	a1cf	100	86.645	ENSATEG00000013720	a1cf	100	86.808	Anabas_testudineus
ENSGACG00000010241	a1cf	100	74.056	ENSAPLG00000002964	A1CF	100	73.563	Anas_platyrhynchos
ENSGACG00000010241	a1cf	100	73.026	ENSACAG00000015269	A1CF	100	72.533	Anolis_carolinensis
ENSGACG00000010241	a1cf	100	74.013	ENSANAG00000019974	A1CF	100	73.355	Aotus_nancymaae
ENSGACG00000010241	a1cf	100	82.927	ENSACLG00000017428	a1cf	100	83.089	Astatotilapia_calliptera
ENSGACG00000010241	a1cf	100	78.167	ENSAMXG00000018180	a1cf	100	77.667	Astyanax_mexicanus
ENSGACG00000010241	a1cf	100	74.013	ENSBTAG00000021195	A1CF	100	74.194	Bos_taurus
ENSGACG00000010241	a1cf	100	75.000	ENSCJAG00000005045	A1CF	100	74.342	Callithrix_jacchus
ENSGACG00000010241	a1cf	100	73.684	ENSCAFG00000015581	A1CF	100	73.355	Canis_familiaris
ENSGACG00000010241	a1cf	100	73.684	ENSCAFG00020026421	A1CF	98	82.274	Canis_lupus_dingo
ENSGACG00000010241	a1cf	100	75.329	ENSCHIG00000020411	A1CF	100	74.836	Capra_hircus
ENSGACG00000010241	a1cf	94	74.390	ENSTSYG00000001755	A1CF	100	72.648	Carlito_syrichta
ENSGACG00000010241	a1cf	100	74.320	ENSCAPG00000017386	A1CF	100	74.320	Cavia_aperea
ENSGACG00000010241	a1cf	100	73.849	ENSCPOG00000009807	A1CF	100	73.849	Cavia_porcellus
ENSGACG00000010241	a1cf	100	74.671	ENSCCAG00000018168	A1CF	100	74.178	Cebus_capucinus
ENSGACG00000010241	a1cf	100	73.191	ENSCATG00000043715	A1CF	100	72.533	Cercocebus_atys
ENSGACG00000010241	a1cf	100	74.178	ENSCLAG00000010424	A1CF	100	74.178	Chinchilla_lanigera
ENSGACG00000010241	a1cf	100	74.342	ENSCSAG00000007032	A1CF	100	73.684	Chlorocebus_sabaeus
ENSGACG00000010241	a1cf	97	71.048	ENSCHOG00000009089	A1CF	98	70.882	Choloepus_hoffmanni
ENSGACG00000010241	a1cf	100	74.836	ENSCPBG00000026464	A1CF	100	73.849	Chrysemys_picta_bellii
ENSGACG00000010241	a1cf	100	74.507	ENSCANG00000038032	A1CF	100	73.849	Colobus_angolensis_palliatus
ENSGACG00000010241	a1cf	100	74.013	ENSCGRG00001017413	A1cf	100	73.520	Cricetulus_griseus_chok1gshd
ENSGACG00000010241	a1cf	100	73.279	ENSCGRG00000017332	A1cf	100	72.386	Cricetulus_griseus_crigri
ENSGACG00000010241	a1cf	100	84.262	ENSCSEG00000002361	a1cf	100	84.098	Cynoglossus_semilaevis
ENSGACG00000010241	a1cf	100	84.528	ENSCVAG00000010520	a1cf	100	85.342	Cyprinodon_variegatus
ENSGACG00000010241	a1cf	100	78.454	ENSDARG00000002968	a1cf	100	77.632	Danio_rerio
ENSGACG00000010241	a1cf	100	74.507	ENSDNOG00000002829	A1CF	100	74.220	Dasypus_novemcinctus
ENSGACG00000010241	a1cf	80	80.364	ENSETEG00000012527	A1CF	80	81.481	Echinops_telfairi
ENSGACG00000010241	a1cf	100	74.548	ENSEASG00005012924	A1CF	100	74.384	Equus_asinus_asinus
ENSGACG00000010241	a1cf	100	74.056	ENSECAG00000010424	A1CF	100	73.892	Equus_caballus
ENSGACG00000010241	a1cf	80	65.199	ENSEEUG00000000013	A1CF	96	65.939	Erinaceus_europaeus
ENSGACG00000010241	a1cf	100	80.263	ENSELUG00000003159	a1cf	100	79.605	Esox_lucius
ENSGACG00000010241	a1cf	100	72.951	ENSFCAG00000011179	A1CF	100	72.697	Felis_catus
ENSGACG00000010241	a1cf	100	74.056	ENSFALG00000013183	A1CF	100	73.399	Ficedula_albicollis
ENSGACG00000010241	a1cf	100	72.862	ENSFDAG00000019371	A1CF	100	73.026	Fukomys_damarensis
ENSGACG00000010241	a1cf	100	81.894	ENSFHEG00000019652	a1cf	100	82.890	Fundulus_heteroclitus
ENSGACG00000010241	a1cf	100	81.910	ENSGMOG00000018943	a1cf	100	81.575	Gadus_morhua
ENSGACG00000010241	a1cf	95	74.144	ENSGALG00000003765	A1CF	98	73.459	Gallus_gallus
ENSGACG00000010241	a1cf	100	78.525	ENSGAFG00000014868	a1cf	100	78.197	Gambusia_affinis
ENSGACG00000010241	a1cf	95	74.697	ENSGAGG00000016508	A1CF	97	73.657	Gopherus_agassizii
ENSGACG00000010241	a1cf	100	75.000	ENSGGOG00000009670	A1CF	100	73.849	Gorilla_gorilla
ENSGACG00000010241	a1cf	100	85.041	ENSHBUG00000021959	a1cf	100	86.179	Haplochromis_burtoni
ENSGACG00000010241	a1cf	100	74.342	ENSHGLG00000008955	A1CF	100	74.013	Heterocephalus_glaber_female
ENSGACG00000010241	a1cf	100	73.684	ENSHGLG00100000518	A1CF	100	73.355	Heterocephalus_glaber_male
ENSGACG00000010241	a1cf	100	74.716	ENSHCOG00000017669	a1cf	100	76.175	Hippocampus_comes
ENSGACG00000010241	a1cf	88	82.900	ENSIPUG00000010367	a1cf	99	80.284	Ictalurus_punctatus
ENSGACG00000010241	a1cf	100	85.041	ENSKMAG00000006568	a1cf	100	85.854	Kryptolebias_marmoratus
ENSGACG00000010241	a1cf	99	88.274	ENSLBEG00000020994	a1cf	99	88.436	Labrus_bergylta
ENSGACG00000010241	a1cf	100	75.164	ENSLACG00000008061	A1CF	100	74.507	Latimeria_chalumnae
ENSGACG00000010241	a1cf	100	79.605	ENSLOCG00000006302	a1cf	100	78.783	Lepisosteus_oculatus
ENSGACG00000010241	a1cf	100	74.507	ENSLAFG00000015462	A1CF	100	74.836	Loxodonta_africana
ENSGACG00000010241	a1cf	100	73.355	ENSMFAG00000035948	A1CF	100	72.697	Macaca_fascicularis
ENSGACG00000010241	a1cf	100	73.355	ENSMMUG00000007077	A1CF	100	72.697	Macaca_mulatta
ENSGACG00000010241	a1cf	100	73.355	ENSMNEG00000031454	A1CF	100	72.697	Macaca_nemestrina
ENSGACG00000010241	a1cf	100	74.342	ENSMLEG00000037223	A1CF	100	73.684	Mandrillus_leucophaeus
ENSGACG00000010241	a1cf	100	83.961	ENSMAMG00000010402	a1cf	100	85.270	Mastacembelus_armatus
ENSGACG00000010241	a1cf	100	85.222	ENSMZEG00005013245	a1cf	100	85.082	Maylandia_zebra
ENSGACG00000010241	a1cf	100	73.934	ENSMGAG00000001507	A1CF	100	73.279	Meleagris_gallopavo
ENSGACG00000010241	a1cf	100	73.684	ENSMAUG00000007422	A1cf	100	73.191	Mesocricetus_auratus
ENSGACG00000010241	a1cf	100	72.787	ENSMICG00000003377	A1CF	100	73.443	Microcebus_murinus
ENSGACG00000010241	a1cf	100	74.426	ENSMOCG00000021536	A1cf	100	74.262	Microtus_ochrogaster
ENSGACG00000010241	a1cf	100	79.201	ENSMMOG00000009422	a1cf	100	79.500	Mola_mola
ENSGACG00000010241	a1cf	88	75.139	ENSMODG00000016478	A1CF	99	73.703	Monodelphis_domestica
ENSGACG00000010241	a1cf	100	78.618	ENSMALG00000012992	a1cf	100	77.632	Monopterus_albus
ENSGACG00000010241	a1cf	100	73.727	MGP_CAROLIEiJ_G0022873	A1cf	100	73.727	Mus_caroli
ENSGACG00000010241	a1cf	100	73.727	ENSMUSG00000052595	A1cf	99	81.940	Mus_musculus
ENSGACG00000010241	a1cf	100	74.426	MGP_PahariEiJ_G0014366	A1cf	100	73.399	Mus_pahari
ENSGACG00000010241	a1cf	100	73.563	MGP_SPRETEiJ_G0023792	A1cf	100	73.563	Mus_spretus
ENSGACG00000010241	a1cf	100	69.572	ENSMPUG00000016971	A1CF	100	69.243	Mustela_putorius_furo
ENSGACG00000010241	a1cf	100	74.262	ENSMLUG00000016071	A1CF	100	74.056	Myotis_lucifugus
ENSGACG00000010241	a1cf	100	75.000	ENSNGAG00000015136	A1cf	100	74.836	Nannospalax_galili
ENSGACG00000010241	a1cf	100	85.366	ENSNBRG00000001712	a1cf	100	86.504	Neolamprologus_brichardi
ENSGACG00000010241	a1cf	100	74.836	ENSNLEG00000012028	A1CF	100	74.342	Nomascus_leucogenys
ENSGACG00000010241	a1cf	94	73.868	ENSMEUG00000015909	A1CF	100	73.519	Notamacropus_eugenii
ENSGACG00000010241	a1cf	91	65.171	ENSOPRG00000010667	A1CF	100	64.632	Ochotona_princeps
ENSGACG00000010241	a1cf	100	85.528	ENSONIG00000019105	a1cf	100	85.854	Oreochromis_niloticus
ENSGACG00000010241	a1cf	78	73.849	ENSOANG00000007360	A1CF	99	73.222	Ornithorhynchus_anatinus
ENSGACG00000010241	a1cf	100	72.862	ENSOCUG00000011587	A1CF	100	72.368	Oryctolagus_cuniculus
ENSGACG00000010241	a1cf	100	82.382	ENSORLG00000013342	a1cf	100	82.410	Oryzias_latipes
ENSGACG00000010241	a1cf	100	83.713	ENSORLG00020000586	a1cf	100	84.365	Oryzias_latipes_hni
ENSGACG00000010241	a1cf	100	83.713	ENSORLG00015018569	a1cf	100	84.365	Oryzias_latipes_hsok
ENSGACG00000010241	a1cf	100	83.633	ENSOMEG00000013531	a1cf	100	83.142	Oryzias_melastigma
ENSGACG00000010241	a1cf	100	72.862	ENSOGAG00000012884	A1CF	100	73.191	Otolemur_garnettii
ENSGACG00000010241	a1cf	100	75.164	ENSOARG00000013695	A1CF	100	74.671	Ovis_aries
ENSGACG00000010241	a1cf	98	73.077	ENSPPAG00000028115	A1CF	99	77.381	Pan_paniscus
ENSGACG00000010241	a1cf	100	74.098	ENSPPRG00000012180	A1CF	100	73.849	Panthera_pardus
ENSGACG00000010241	a1cf	100	74.098	ENSPTIG00000021223	A1CF	100	73.849	Panthera_tigris_altaica
ENSGACG00000010241	a1cf	100	75.000	ENSPTRG00000002508	A1CF	100	73.849	Pan_troglodytes
ENSGACG00000010241	a1cf	100	73.355	ENSPANG00000021988	A1CF	100	72.697	Papio_anubis
ENSGACG00000010241	a1cf	100	79.934	ENSPKIG00000025176	a1cf	100	79.276	Paramormyrops_kingsleyae
ENSGACG00000010241	a1cf	100	73.191	ENSPSIG00000010318	A1CF	100	72.368	Pelodiscus_sinensis
ENSGACG00000010241	a1cf	98	68.677	ENSPMGG00000013359	a1cf	99	69.154	Periophthalmus_magnuspinnatus
ENSGACG00000010241	a1cf	100	74.507	ENSPEMG00000015021	A1cf	100	74.013	Peromyscus_maniculatus_bairdii
ENSGACG00000010241	a1cf	100	73.026	ENSPCIG00000002175	A1CF	100	73.520	Phascolarctos_cinereus
ENSGACG00000010241	a1cf	100	85.993	ENSPFOG00000007437	-	100	86.971	Poecilia_formosa
ENSGACG00000010241	a1cf	100	86.156	ENSPFOG00000006683	a1cf	100	87.134	Poecilia_formosa
ENSGACG00000010241	a1cf	100	84.528	ENSPLAG00000000026	a1cf	100	85.505	Poecilia_latipinna
ENSGACG00000010241	a1cf	100	84.528	ENSPLAG00000001210	-	100	85.505	Poecilia_latipinna
ENSGACG00000010241	a1cf	100	76.998	ENSPMEG00000000921	a1cf	100	77.977	Poecilia_mexicana
ENSGACG00000010241	a1cf	100	78.303	ENSPMEG00000015529	-	100	79.282	Poecilia_mexicana
ENSGACG00000010241	a1cf	100	85.342	ENSPREG00000016298	a1cf	100	86.319	Poecilia_reticulata
ENSGACG00000010241	a1cf	100	73.684	ENSPPYG00000002819	A1CF	100	73.191	Pongo_abelii
ENSGACG00000010241	a1cf	81	60.000	ENSPCAG00000006463	A1CF	79	59.381	Procavia_capensis
ENSGACG00000010241	a1cf	100	73.520	ENSPCOG00000024172	A1CF	100	73.849	Propithecus_coquereli
ENSGACG00000010241	a1cf	100	86.504	ENSPNYG00000017944	a1cf	100	87.642	Pundamilia_nyererei
ENSGACG00000010241	a1cf	100	80.492	ENSPNAG00000007704	a1cf	100	79.836	Pygocentrus_nattereri
ENSGACG00000010241	a1cf	100	72.742	ENSRNOG00000033195	A1cf	100	72.742	Rattus_norvegicus
ENSGACG00000010241	a1cf	100	71.000	ENSRBIG00000042892	A1CF	100	72.467	Rhinopithecus_bieti
ENSGACG00000010241	a1cf	100	74.507	ENSRROG00000041398	A1CF	100	73.849	Rhinopithecus_roxellana
ENSGACG00000010241	a1cf	100	75.000	ENSSBOG00000021930	A1CF	100	74.507	Saimiri_boliviensis_boliviensis
ENSGACG00000010241	a1cf	100	74.178	ENSSHAG00000005096	A1CF	100	73.849	Sarcophilus_harrisii
ENSGACG00000010241	a1cf	100	80.820	ENSSFOG00015011774	a1cf	100	80.656	Scleropages_formosus
ENSGACG00000010241	a1cf	100	86.526	ENSSMAG00000013271	a1cf	100	87.338	Scophthalmus_maximus
ENSGACG00000010241	a1cf	100	87.685	ENSSDUG00000013930	a1cf	100	87.356	Seriola_dumerili
ENSGACG00000010241	a1cf	100	78.723	ENSSLDG00000004290	a1cf	100	79.672	Seriola_lalandi_dorsalis
ENSGACG00000010241	a1cf	95	66.090	ENSSARG00000005940	A1CF	95	65.803	Sorex_araneus
ENSGACG00000010241	a1cf	95	73.966	ENSSPUG00000006797	A1CF	95	73.494	Sphenodon_punctatus
ENSGACG00000010241	a1cf	100	75.493	ENSSSCG00000010431	A1CF	100	75.000	Sus_scrofa
ENSGACG00000010241	a1cf	100	75.410	ENSTGUG00000005090	A1CF	100	74.590	Taeniopygia_guttata
ENSGACG00000010241	a1cf	100	83.740	ENSTRUG00000001982	a1cf	100	84.365	Takifugu_rubripes
ENSGACG00000010241	a1cf	100	84.253	ENSTNIG00000003580	a1cf	100	84.091	Tetraodon_nigroviridis
ENSGACG00000010241	a1cf	98	68.067	ENSTTRG00000013190	A1CF	96	67.563	Tursiops_truncatus
ENSGACG00000010241	a1cf	100	72.862	ENSUAMG00000020065	A1CF	100	72.204	Ursus_americanus
ENSGACG00000010241	a1cf	100	73.849	ENSUMAG00000011162	A1CF	100	73.355	Ursus_maritimus
ENSGACG00000010241	a1cf	89	72.881	ENSVPAG00000006130	A1CF	86	72.316	Vicugna_pacos
ENSGACG00000010241	a1cf	100	72.862	ENSVVUG00000002504	A1CF	100	72.368	Vulpes_vulpes
ENSGACG00000010241	a1cf	100	68.586	ENSXETG00000006611	a1cf	100	68.092	Xenopus_tropicalis
ENSGACG00000010241	a1cf	100	86.885	ENSXCOG00000003302	a1cf	100	86.557	Xiphophorus_couchianus
ENSGACG00000010241	a1cf	100	88.197	ENSXMAG00000016703	a1cf	100	87.869	Xiphophorus_maculatus