EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000010584 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 3128 bases
Position: chrgroupXIII:11563305-11566432
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000014003	SMN	PF06003.12	4.6e-110	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000014028	-	1009	-	ENSGACP00000014003	280 (aa)	-	G3P8S9

Gene Model

Click here to download ENSGACG00000010584's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000010584's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000010584	smn1	91	51.481	ENSG00000205571	SMN2	92	54.406	Homo_sapiens
ENSGACG00000010584	smn1	91	51.481	ENSG00000172062	SMN1	92	54.406	Homo_sapiens
ENSGACG00000010584	smn1	97	80.212	ENSAPOG00000011324	smn1	100	81.979	Acanthochromis_polyacanthus
ENSGACG00000010584	smn1	91	53.731	ENSAMEG00000003316	-	89	51.111	Ailuropoda_melanoleuca
ENSGACG00000010584	smn1	60	78.107	ENSACIG00000007598	smn1	98	80.114	Amphilophus_citrinellus
ENSGACG00000010584	smn1	90	72.901	ENSACIG00000019772	-	99	74.427	Amphilophus_citrinellus
ENSGACG00000010584	smn1	97	79.505	ENSAOCG00000024444	smn1	100	81.272	Amphiprion_ocellaris
ENSGACG00000010584	smn1	97	79.859	ENSAPEG00000016504	smn1	100	81.625	Amphiprion_percula
ENSGACG00000010584	smn1	92	79.630	ENSATEG00000002182	smn1	82	81.481	Anabas_testudineus
ENSGACG00000010584	smn1	66	51.795	ENSAPLG00000010912	-	96	45.361	Anas_platyrhynchos
ENSGACG00000010584	smn1	95	53.597	ENSACAG00000010017	-	96	53.957	Anolis_carolinensis
ENSGACG00000010584	smn1	91	51.292	ENSANAG00000032133	-	92	51.661	Aotus_nancymaae
ENSGACG00000010584	smn1	96	77.061	ENSACLG00000007308	smn1	94	78.136	Astatotilapia_calliptera
ENSGACG00000010584	smn1	97	65.108	ENSAMXG00000013884	smn1	100	67.143	Astyanax_mexicanus
ENSGACG00000010584	smn1	91	52.612	ENSBTAG00000005743	SMN2	93	49.817	Bos_taurus
ENSGACG00000010584	smn1	91	52.692	ENSCJAG00000016290	-	92	51.825	Callithrix_jacchus
ENSGACG00000010584	smn1	91	52.239	ENSCAFG00000007812	SMN	93	53.731	Canis_familiaris
ENSGACG00000010584	smn1	91	52.434	ENSCAFG00020019229	-	86	53.731	Canis_lupus_dingo
ENSGACG00000010584	smn1	91	51.838	ENSCHIG00000015559	-	91	47.970	Capra_hircus
ENSGACG00000010584	smn1	91	52.490	ENSTSYG00000012058	-	93	54.682	Carlito_syrichta
ENSGACG00000010584	smn1	70	43.961	ENSCAPG00000011021	-	88	45.876	Cavia_aperea
ENSGACG00000010584	smn1	91	48.905	ENSCPOG00000036973	-	92	52.788	Cavia_porcellus
ENSGACG00000010584	smn1	91	48.029	ENSCPOG00000012328	-	93	50.730	Cavia_porcellus
ENSGACG00000010584	smn1	91	52.107	ENSCCAG00000018127	-	91	51.648	Cebus_capucinus
ENSGACG00000010584	smn1	91	53.903	ENSCATG00000037002	-	92	53.846	Cercocebus_atys
ENSGACG00000010584	smn1	91	53.137	ENSCLAG00000000284	-	92	49.265	Chinchilla_lanigera
ENSGACG00000010584	smn1	91	52.347	ENSCSAG00000015688	-	91	54.647	Chlorocebus_sabaeus
ENSGACG00000010584	smn1	66	73.333	ENSCHOG00000007346	-	100	46.215	Choloepus_hoffmanni
ENSGACG00000010584	smn1	93	52.030	ENSCPBG00000010968	-	99	51.515	Chrysemys_picta_bellii
ENSGACG00000010584	smn1	91	53.462	ENSCANG00000038242	-	93	55.426	Colobus_angolensis_palliatus
ENSGACG00000010584	smn1	89	51.908	ENSCANG00000033324	-	89	50.558	Colobus_angolensis_palliatus
ENSGACG00000010584	smn1	91	53.137	ENSCGRG00001017959	-	93	50.735	Cricetulus_griseus_chok1gshd
ENSGACG00000010584	smn1	91	39.552	ENSCGRG00001016998	-	91	36.704	Cricetulus_griseus_chok1gshd
ENSGACG00000010584	smn1	91	53.137	ENSCGRG00000007698	Smn1	93	50.735	Cricetulus_griseus_crigri
ENSGACG00000010584	smn1	95	65.035	ENSCSEG00000015227	smn1	100	63.509	Cynoglossus_semilaevis
ENSGACG00000010584	smn1	97	76.842	ENSCVAG00000007498	smn1	100	78.596	Cyprinodon_variegatus
ENSGACG00000010584	smn1	97	63.701	ENSDARG00000018494	smn1	100	59.011	Danio_rerio
ENSGACG00000010584	smn1	79	48.498	ENSDNOG00000007283	-	97	46.809	Dasypus_novemcinctus
ENSGACG00000010584	smn1	91	41.818	ENSDORG00000007082	Smn1	90	45.211	Dipodomys_ordii
ENSGACG00000010584	smn1	57	48.466	ENSETEG00000001406	-	92	47.179	Echinops_telfairi
ENSGACG00000010584	smn1	93	41.463	ENSEBUG00000011902	smn1	96	40.550	Eptatretus_burgeri
ENSGACG00000010584	smn1	86	46.124	ENSEASG00005018000	-	89	51.172	Equus_asinus_asinus
ENSGACG00000010584	smn1	91	50.730	ENSECAG00000015215	-	93	55.515	Equus_caballus
ENSGACG00000010584	smn1	85	50.781	ENSEEUG00000015777	-	100	51.613	Erinaceus_europaeus
ENSGACG00000010584	smn1	97	68.214	ENSELUG00000018067	smn1	100	68.571	Esox_lucius
ENSGACG00000010584	smn1	91	53.160	ENSFCAG00000028292	SMN	92	55.147	Felis_catus
ENSGACG00000010584	smn1	92	54.717	ENSFALG00000012320	-	95	52.091	Ficedula_albicollis
ENSGACG00000010584	smn1	91	45.956	ENSFDAG00000017683	-	92	47.080	Fukomys_damarensis
ENSGACG00000010584	smn1	94	76.812	ENSFHEG00000018508	smn1	100	78.623	Fundulus_heteroclitus
ENSGACG00000010584	smn1	99	69.784	ENSGMOG00000017279	smn1	98	70.438	Gadus_morhua
ENSGACG00000010584	smn1	92	57.088	ENSGALG00000002430	SMN	97	51.220	Gallus_gallus
ENSGACG00000010584	smn1	97	78.799	ENSGAFG00000009501	smn1	100	80.565	Gambusia_affinis
ENSGACG00000010584	smn1	95	37.555	ENSGAGG00000013639	-	92	39.691	Gopherus_agassizii
ENSGACG00000010584	smn1	93	53.731	ENSGAGG00000011374	-	98	52.708	Gopherus_agassizii
ENSGACG00000010584	smn1	88	48.473	ENSGGOG00000003872	-	93	52.778	Gorilla_gorilla
ENSGACG00000010584	smn1	55	61.392	ENSGGOG00000026704	-	87	56.452	Gorilla_gorilla
ENSGACG00000010584	smn1	97	79.928	ENSHBUG00000013987	smn1	100	81.004	Haplochromis_burtoni
ENSGACG00000010584	smn1	96	45.263	ENSHGLG00000001905	-	94	49.071	Heterocephalus_glaber_female
ENSGACG00000010584	smn1	91	47.778	ENSHGLG00000001018	-	92	47.407	Heterocephalus_glaber_female
ENSGACG00000010584	smn1	91	47.778	ENSHGLG00100011252	-	92	47.407	Heterocephalus_glaber_male
ENSGACG00000010584	smn1	94	45.161	ENSHGLG00100018676	-	96	49.049	Heterocephalus_glaber_male
ENSGACG00000010584	smn1	91	74.905	ENSHCOG00000017136	smn1	89	75.665	Hippocampus_comes
ENSGACG00000010584	smn1	99	62.759	ENSIPUG00000012580	smn1	90	63.793	Ictalurus_punctatus
ENSGACG00000010584	smn1	88	51.562	ENSSTOG00000012288	-	93	53.282	Ictidomys_tridecemlineatus
ENSGACG00000010584	smn1	60	45.509	ENSJJAG00000014853	-	97	46.774	Jaculus_jaculus
ENSGACG00000010584	smn1	97	76.140	ENSKMAG00000007239	smn1	100	77.544	Kryptolebias_marmoratus
ENSGACG00000010584	smn1	97	77.113	ENSLBEG00000022550	smn1	100	78.169	Labrus_bergylta
ENSGACG00000010584	smn1	97	32.886	ENSLACG00000009808	-	95	30.915	Latimeria_chalumnae
ENSGACG00000010584	smn1	97	57.042	ENSLOCG00000011339	smn1	100	57.194	Lepisosteus_oculatus
ENSGACG00000010584	smn1	91	52.399	ENSLAFG00000003425	-	89	51.460	Loxodonta_africana
ENSGACG00000010584	smn1	91	47.407	ENSMFAG00000008812	-	91	49.442	Macaca_fascicularis
ENSGACG00000010584	smn1	91	53.077	ENSMFAG00000031523	SMN1	95	52.874	Macaca_fascicularis
ENSGACG00000010584	smn1	91	48.699	ENSMMUG00000030594	-	91	48.699	Macaca_mulatta
ENSGACG00000010584	smn1	91	53.077	ENSMMUG00000020214	SMN1	92	54.615	Macaca_mulatta
ENSGACG00000010584	smn1	91	53.077	ENSMNEG00000035094	-	92	54.615	Macaca_nemestrina
ENSGACG00000010584	smn1	74	39.269	ENSMNEG00000036423	-	81	38.942	Macaca_nemestrina
ENSGACG00000010584	smn1	91	53.077	ENSMLEG00000041902	-	93	56.767	Mandrillus_leucophaeus
ENSGACG00000010584	smn1	97	79.225	ENSMAMG00000011034	smn1	100	79.930	Mastacembelus_armatus
ENSGACG00000010584	smn1	97	80.287	ENSMZEG00005013634	smn1	100	81.362	Maylandia_zebra
ENSGACG00000010584	smn1	66	50.267	ENSMGAG00000008889	-	95	45.699	Meleagris_gallopavo
ENSGACG00000010584	smn1	60	56.977	ENSMAUG00000010262	Smn1	93	50.185	Mesocricetus_auratus
ENSGACG00000010584	smn1	62	56.497	ENSMICG00000034708	-	83	54.167	Microcebus_murinus
ENSGACG00000010584	smn1	91	51.825	ENSMOCG00000017833	Smn1	92	51.481	Microtus_ochrogaster
ENSGACG00000010584	smn1	94	73.004	ENSMMOG00000005504	smn1	98	73.962	Mola_mola
ENSGACG00000010584	smn1	91	55.597	ENSMODG00000001436	-	92	51.331	Monodelphis_domestica
ENSGACG00000010584	smn1	97	79.298	ENSMALG00000008025	smn1	100	81.053	Monopterus_albus
ENSGACG00000010584	smn1	91	50.903	MGP_CAROLIEiJ_G0018836	Smn1	93	52.347	Mus_caroli
ENSGACG00000010584	smn1	91	50.542	ENSMUSG00000021645	Smn1	93	51.986	Mus_musculus
ENSGACG00000010584	smn1	91	52.727	MGP_PahariEiJ_G0015911	Smn1	93	53.091	Mus_pahari
ENSGACG00000010584	smn1	91	51.264	MGP_SPRETEiJ_G0019718	Smn1	93	52.330	Mus_spretus
ENSGACG00000010584	smn1	89	50.741	ENSMPUG00000014470	-	93	53.612	Mustela_putorius_furo
ENSGACG00000010584	smn1	91	51.449	ENSMLUG00000010603	-	89	53.623	Myotis_lucifugus
ENSGACG00000010584	smn1	91	52.239	ENSNGAG00000019833	Smn1	93	48.897	Nannospalax_galili
ENSGACG00000010584	smn1	97	79.787	ENSNBRG00000023000	smn1	100	81.560	Neolamprologus_brichardi
ENSGACG00000010584	smn1	91	51.661	ENSNLEG00000004454	-	92	54.789	Nomascus_leucogenys
ENSGACG00000010584	smn1	76	47.345	ENSMEUG00000011393	-	100	42.601	Notamacropus_eugenii
ENSGACG00000010584	smn1	85	50.198	ENSOPRG00000002015	-	100	53.937	Ochotona_princeps
ENSGACG00000010584	smn1	88	52.692	ENSODEG00000015976	-	91	54.104	Octodon_degus
ENSGACG00000010584	smn1	97	79.433	ENSONIG00000011799	smn1	100	81.206	Oreochromis_niloticus
ENSGACG00000010584	smn1	92	51.838	ENSOANG00000001626	-	95	48.864	Ornithorhynchus_anatinus
ENSGACG00000010584	smn1	91	53.208	ENSOCUG00000017097	-	92	49.259	Oryctolagus_cuniculus
ENSGACG00000010584	smn1	91	41.241	ENSOCUG00000025183	-	92	41.007	Oryctolagus_cuniculus
ENSGACG00000010584	smn1	91	52.963	ENSOCUG00000026649	-	92	49.097	Oryctolagus_cuniculus
ENSGACG00000010584	smn1	97	76.408	ENSORLG00000010552	smn1	100	77.465	Oryzias_latipes
ENSGACG00000010584	smn1	97	73.091	ENSORLG00020007936	smn1	100	74.182	Oryzias_latipes_hni
ENSGACG00000010584	smn1	97	77.113	ENSORLG00015022425	smn1	100	77.465	Oryzias_latipes_hsok
ENSGACG00000010584	smn1	97	78.169	ENSOMEG00000007824	smn1	100	78.521	Oryzias_melastigma
ENSGACG00000010584	smn1	88	47.940	ENSOGAG00000031414	-	92	47.584	Otolemur_garnettii
ENSGACG00000010584	smn1	91	50.373	ENSOARG00000005425	-	97	52.045	Ovis_aries
ENSGACG00000010584	smn1	91	51.481	ENSPPAG00000036640	-	92	54.406	Pan_paniscus
ENSGACG00000010584	smn1	91	53.160	ENSPPRG00000005575	-	93	51.471	Panthera_pardus
ENSGACG00000010584	smn1	91	52.963	ENSPTIG00000007745	-	93	53.846	Panthera_tigris_altaica
ENSGACG00000010584	smn1	91	51.838	ENSPTRG00000016955	-	92	51.136	Pan_troglodytes
ENSGACG00000010584	smn1	91	50.965	ENSPANG00000000253	-	91	49.618	Papio_anubis
ENSGACG00000010584	smn1	91	52.874	ENSPANG00000013601	-	91	54.275	Papio_anubis
ENSGACG00000010584	smn1	97	57.706	ENSPKIG00000011096	smn1	100	57.439	Paramormyrops_kingsleyae
ENSGACG00000010584	smn1	89	54.962	ENSPSIG00000014787	-	86	54.340	Pelodiscus_sinensis
ENSGACG00000010584	smn1	97	67.742	ENSPMGG00000012285	smn1	97	72.180	Periophthalmus_magnuspinnatus
ENSGACG00000010584	smn1	89	39.535	ENSPMAG00000005004	smn1	91	38.346	Petromyzon_marinus
ENSGACG00000010584	smn1	91	55.224	ENSPCIG00000025764	-	93	50.570	Phascolarctos_cinereus
ENSGACG00000010584	smn1	97	78.445	ENSPFOG00000007786	smn1	100	80.212	Poecilia_formosa
ENSGACG00000010584	smn1	97	78.799	ENSPLAG00000012071	smn1	100	80.565	Poecilia_latipinna
ENSGACG00000010584	smn1	97	78.445	ENSPMEG00000017085	smn1	100	80.212	Poecilia_mexicana
ENSGACG00000010584	smn1	97	78.445	ENSPREG00000005824	smn1	100	80.212	Poecilia_reticulata
ENSGACG00000010584	smn1	89	49.810	ENSPPYG00000015533	-	95	52.672	Pongo_abelii
ENSGACG00000010584	smn1	88	49.057	ENSPCAG00000004187	-	97	51.908	Procavia_capensis
ENSGACG00000010584	smn1	60	50.838	ENSPCOG00000022307	-	75	53.012	Propithecus_coquereli
ENSGACG00000010584	smn1	91	53.558	ENSPVAG00000005977	-	92	54.478	Pteropus_vampyrus
ENSGACG00000010584	smn1	97	79.787	ENSPNYG00000014148	smn1	100	81.560	Pundamilia_nyererei
ENSGACG00000010584	smn1	97	63.860	ENSPNAG00000014007	smn1	87	64.912	Pygocentrus_nattereri
ENSGACG00000010584	smn1	91	50.182	ENSRNOG00000018067	Smn1	92	48.188	Rattus_norvegicus
ENSGACG00000010584	smn1	89	49.035	ENSRBIG00000036775	-	93	48.551	Rhinopithecus_bieti
ENSGACG00000010584	smn1	91	53.462	ENSRBIG00000037052	-	91	54.647	Rhinopithecus_bieti
ENSGACG00000010584	smn1	91	53.462	ENSRROG00000039399	-	92	55.000	Rhinopithecus_roxellana
ENSGACG00000010584	smn1	91	48.276	ENSRROG00000031088	-	91	49.434	Rhinopithecus_roxellana
ENSGACG00000010584	smn1	91	52.692	ENSSBOG00000011665	-	91	51.880	Saimiri_boliviensis_boliviensis
ENSGACG00000010584	smn1	52	58.667	ENSSBOG00000020112	-	65	53.158	Saimiri_boliviensis_boliviensis
ENSGACG00000010584	smn1	91	55.224	ENSSHAG00000001499	-	98	48.669	Sarcophilus_harrisii
ENSGACG00000010584	smn1	97	61.922	ENSSFOG00015015507	smn1	100	62.278	Scleropages_formosus
ENSGACG00000010584	smn1	97	77.660	ENSSMAG00000007922	smn1	100	78.369	Scophthalmus_maximus
ENSGACG00000010584	smn1	97	82.042	ENSSDUG00000018533	smn1	100	83.803	Seriola_dumerili
ENSGACG00000010584	smn1	97	82.394	ENSSLDG00000021135	smn1	100	84.155	Seriola_lalandi_dorsalis
ENSGACG00000010584	smn1	96	53.952	ENSSPUG00000000373	-	98	52.297	Sphenodon_punctatus
ENSGACG00000010584	smn1	97	82.332	ENSSPAG00000004345	smn1	100	82.332	Stegastes_partitus
ENSGACG00000010584	smn1	91	51.493	ENSSSCG00000016970	-	92	54.444	Sus_scrofa
ENSGACG00000010584	smn1	58	60.833	ENSSSCG00000029127	-	91	42.023	Sus_scrofa
ENSGACG00000010584	smn1	88	51.866	ENSTGUG00000001548	-	95	48.507	Taeniopygia_guttata
ENSGACG00000010584	smn1	97	67.021	ENSTRUG00000000736	smn	100	66.312	Takifugu_rubripes
ENSGACG00000010584	smn1	97	66.090	ENSTNIG00000009892	smn1	100	66.436	Tetraodon_nigroviridis
ENSGACG00000010584	smn1	59	59.412	ENSTBEG00000002399	-	92	55.497	Tupaia_belangeri
ENSGACG00000010584	smn1	91	55.682	ENSTTRG00000005080	-	91	57.143	Tursiops_truncatus
ENSGACG00000010584	smn1	58	59.281	ENSUAMG00000024947	-	70	55.497	Ursus_americanus
ENSGACG00000010584	smn1	91	54.478	ENSUMAG00000007842	-	69	51.852	Ursus_maritimus
ENSGACG00000010584	smn1	88	49.808	ENSVPAG00000009887	-	61	80.952	Vicugna_pacos
ENSGACG00000010584	smn1	91	52.239	ENSVVUG00000006934	-	93	53.731	Vulpes_vulpes
ENSGACG00000010584	smn1	92	57.836	ENSXETG00000018189	smn2	95	52.899	Xenopus_tropicalis
ENSGACG00000010584	smn1	84	32.950	ENSXETG00000004912	-	77	62.069	Xenopus_tropicalis
ENSGACG00000010584	smn1	97	78.445	ENSXMAG00000001521	smn1	100	79.859	Xiphophorus_maculatus