EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000010679 (Gene tree)
Gene ID: -
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine-rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 40743 bases
Position: chrgroupVI:13382903-13423645
Accession: ZDB-GENE-030131-7887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000014156	PPR	PF01535.20	1.2e-28	1	4
ENSGACP00000014156	PPR	PF01535.20	1.2e-28	2	4
ENSGACP00000014156	PPR	PF01535.20	1.2e-28	3	4
ENSGACP00000014156	PPR	PF01535.20	1.2e-28	4	4
ENSGACP00000014169	PPR	PF01535.20	2.5e-28	1	4
ENSGACP00000014169	PPR	PF01535.20	2.5e-28	2	4
ENSGACP00000014169	PPR	PF01535.20	2.5e-28	3	4
ENSGACP00000014169	PPR	PF01535.20	2.5e-28	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000014194	-	4297	-	ENSGACP00000014169	1393 (aa)	-	G3P995
ENSGACT00000014181	-	4164	-	ENSGACP00000014156	1347 (aa)	-	G3P982

Gene Model

Click here to download ENSGACG00000010679's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000010679's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000010679	lrpprc	99	73.196	ENSAPOG00000016610	lrpprc	99	71.169	Acanthochromis_polyacanthus
ENSGACG00000010679	lrpprc	98	51.269	ENSAMEG00000005852	LRPPRC	98	51.029	Ailuropoda_melanoleuca
ENSGACG00000010679	lrpprc	99	71.566	ENSACIG00000009604	lrpprc	99	70.763	Amphilophus_citrinellus
ENSGACG00000010679	lrpprc	99	73.622	ENSAOCG00000005886	lrpprc	99	71.458	Amphiprion_ocellaris
ENSGACG00000010679	lrpprc	99	69.265	ENSAPEG00000002937	lrpprc	98	68.803	Amphiprion_percula
ENSGACG00000010679	lrpprc	91	77.149	ENSATEG00000010555	lrpprc	97	75.000	Anabas_testudineus
ENSGACG00000010679	lrpprc	99	55.769	ENSACAG00000029278	LRPPRC	99	54.487	Anolis_carolinensis
ENSGACG00000010679	lrpprc	99	51.443	ENSANAG00000027440	LRPPRC	97	57.744	Aotus_nancymaae
ENSGACG00000010679	lrpprc	99	68.791	ENSACLG00000023712	lrpprc	92	78.541	Astatotilapia_calliptera
ENSGACG00000010679	lrpprc	99	51.073	ENSCJAG00000000794	LRPPRC	97	57.744	Callithrix_jacchus
ENSGACG00000010679	lrpprc	99	51.627	ENSCHIG00000020173	LRPPRC	99	51.067	Capra_hircus
ENSGACG00000010679	lrpprc	99	40.248	ENSCAPG00000013631	LRPPRC	99	40.058	Cavia_aperea
ENSGACG00000010679	lrpprc	90	48.527	ENSCPOG00000000204	LRPPRC	99	48.527	Cavia_porcellus
ENSGACG00000010679	lrpprc	99	51.147	ENSCCAG00000031900	LRPPRC	97	57.935	Cebus_capucinus
ENSGACG00000010679	lrpprc	99	50.665	ENSCATG00000014187	LRPPRC	98	56.952	Cercocebus_atys
ENSGACG00000010679	lrpprc	99	49.890	ENSCLAG00000005203	LRPPRC	99	49.291	Chinchilla_lanigera
ENSGACG00000010679	lrpprc	99	51.331	ENSCSAG00000013233	LRPPRC	99	50.605	Chlorocebus_sabaeus
ENSGACG00000010679	lrpprc	83	51.976	ENSCHOG00000003631	LRPPRC	84	51.129	Choloepus_hoffmanni
ENSGACG00000010679	lrpprc	99	48.412	ENSCANG00000034961	LRPPRC	99	58.276	Colobus_angolensis_palliatus
ENSGACG00000010679	lrpprc	99	51.073	ENSCGRG00001016261	Lrpprc	99	50.071	Cricetulus_griseus_chok1gshd
ENSGACG00000010679	lrpprc	99	51.073	ENSCGRG00000004072	Lrpprc	99	50.071	Cricetulus_griseus_crigri
ENSGACG00000010679	lrpprc	99	53.221	ENSCSEG00000003850	lrpprc	96	62.097	Cynoglossus_semilaevis
ENSGACG00000010679	lrpprc	99	74.779	ENSCVAG00000012967	lrpprc	99	72.261	Cyprinodon_variegatus
ENSGACG00000010679	lrpprc	99	58.613	ENSDARG00000043970	lrpprc	98	56.597	Danio_rerio
ENSGACG00000010679	lrpprc	82	41.824	ENSDNOG00000032336	-	100	41.824	Dasypus_novemcinctus
ENSGACG00000010679	lrpprc	99	51.441	ENSDNOG00000012594	-	99	50.959	Dasypus_novemcinctus
ENSGACG00000010679	lrpprc	99	51.479	ENSDORG00000012233	Lrpprc	99	50.640	Dipodomys_ordii
ENSGACG00000010679	lrpprc	99	50.627	ENSETEG00000006657	LRPPRC	99	49.716	Echinops_telfairi
ENSGACG00000010679	lrpprc	86	42.117	ENSEEUG00000012340	LRPPRC	93	41.401	Erinaceus_europaeus
ENSGACG00000010679	lrpprc	99	58.481	ENSELUG00000012803	lrpprc	99	58.659	Esox_lucius
ENSGACG00000010679	lrpprc	99	52.698	ENSFCAG00000013468	LRPPRC	99	51.955	Felis_catus
ENSGACG00000010679	lrpprc	99	49.443	ENSFALG00000012738	LRPPRC	98	49.443	Ficedula_albicollis
ENSGACG00000010679	lrpprc	99	49.108	ENSFDAG00000015328	LRPPRC	99	48.269	Fukomys_damarensis
ENSGACG00000010679	lrpprc	99	72.640	ENSFHEG00000019604	lrpprc	99	70.365	Fundulus_heteroclitus
ENSGACG00000010679	lrpprc	99	66.522	ENSGMOG00000008337	lrpprc	99	66.522	Gadus_morhua
ENSGACG00000010679	lrpprc	99	72.107	ENSGAFG00000001455	lrpprc	99	70.106	Gambusia_affinis
ENSGACG00000010679	lrpprc	100	76.753	ENSHBUG00000000393	lrpprc	98	73.773	Haplochromis_burtoni
ENSGACG00000010679	lrpprc	99	49.005	ENSHGLG00000006123	LRPPRC	99	48.125	Heterocephalus_glaber_female
ENSGACG00000010679	lrpprc	62	45.907	ENSHGLG00100005960	-	99	45.907	Heterocephalus_glaber_male
ENSGACG00000010679	lrpprc	97	71.222	ENSHCOG00000002107	lrpprc	100	68.858	Hippocampus_comes
ENSGACG00000010679	lrpprc	99	63.285	ENSIPUG00000009406	lrpprc	99	61.096	Ictalurus_punctatus
ENSGACG00000010679	lrpprc	99	50.924	ENSSTOG00000011185	LRPPRC	99	50.107	Ictidomys_tridecemlineatus
ENSGACG00000010679	lrpprc	99	50.555	ENSJJAG00000020475	Lrpprc	99	49.964	Jaculus_jaculus
ENSGACG00000010679	lrpprc	99	62.906	ENSKMAG00000003287	lrpprc	85	60.582	Kryptolebias_marmoratus
ENSGACG00000010679	lrpprc	99	64.254	ENSLBEG00000023225	lrpprc	98	76.998	Labrus_bergylta
ENSGACG00000010679	lrpprc	99	58.780	ENSLACG00000014030	LRPPRC	99	57.173	Latimeria_chalumnae
ENSGACG00000010679	lrpprc	99	61.425	ENSLOCG00000016390	lrpprc	97	58.828	Lepisosteus_oculatus
ENSGACG00000010679	lrpprc	99	48.820	ENSLAFG00000008614	LRPPRC	99	48.369	Loxodonta_africana
ENSGACG00000010679	lrpprc	99	51.108	ENSMFAG00000041560	LRPPRC	98	56.952	Macaca_fascicularis
ENSGACG00000010679	lrpprc	99	50.443	ENSMMUG00000019841	LRPPRC	98	56.250	Macaca_mulatta
ENSGACG00000010679	lrpprc	99	51.182	ENSMNEG00000031613	LRPPRC	98	57.143	Macaca_nemestrina
ENSGACG00000010679	lrpprc	98	65.582	ENSMAMG00000021835	lrpprc	98	65.145	Mastacembelus_armatus
ENSGACG00000010679	lrpprc	100	76.827	ENSMZEG00005027379	lrpprc	99	73.843	Maylandia_zebra
ENSGACG00000010679	lrpprc	99	50.777	ENSMAUG00000012118	Lrpprc	99	50.111	Mesocricetus_auratus
ENSGACG00000010679	lrpprc	99	50.888	ENSMICG00000010486	LRPPRC	98	55.810	Microcebus_murinus
ENSGACG00000010679	lrpprc	99	51.147	ENSMOCG00000006048	Lrpprc	99	50.321	Microtus_ochrogaster
ENSGACG00000010679	lrpprc	99	68.925	ENSMMOG00000007830	lrpprc	94	76.772	Mola_mola
ENSGACG00000010679	lrpprc	99	50.332	ENSMODG00000000648	LRPPRC	99	50.332	Monodelphis_domestica
ENSGACG00000010679	lrpprc	99	70.332	ENSMALG00000001271	lrpprc	99	68.303	Monopterus_albus
ENSGACG00000010679	lrpprc	99	51.403	ENSMPUG00000011800	LRPPRC	99	52.196	Mustela_putorius_furo
ENSGACG00000010679	lrpprc	99	51.997	ENSMLUG00000010575	LRPPRC	99	51.390	Myotis_lucifugus
ENSGACG00000010679	lrpprc	99	50.259	ENSNGAG00000013069	Lrpprc	99	49.322	Nannospalax_galili
ENSGACG00000010679	lrpprc	99	67.064	ENSNBRG00000013202	lrpprc	92	81.441	Neolamprologus_brichardi
ENSGACG00000010679	lrpprc	99	49.445	ENSNLEG00000016782	LRPPRC	98	56.762	Nomascus_leucogenys
ENSGACG00000010679	lrpprc	92	51.724	ENSOPRG00000016774	LRPPRC	89	51.724	Ochotona_princeps
ENSGACG00000010679	lrpprc	99	50.037	ENSODEG00000011211	LRPPRC	99	49.359	Octodon_degus
ENSGACG00000010679	lrpprc	100	77.048	ENSONIG00000000917	lrpprc	100	73.737	Oreochromis_niloticus
ENSGACG00000010679	lrpprc	57	45.350	ENSOANG00000014670	-	100	45.548	Ornithorhynchus_anatinus
ENSGACG00000010679	lrpprc	99	51.732	ENSOCUG00000015046	LRPPRC	96	50.959	Oryctolagus_cuniculus
ENSGACG00000010679	lrpprc	99	68.736	ENSORLG00000004605	lrpprc	99	65.558	Oryzias_latipes
ENSGACG00000010679	lrpprc	96	72.086	ENSORLG00020012536	lrpprc	99	71.746	Oryzias_latipes_hni
ENSGACG00000010679	lrpprc	94	76.353	ENSORLG00015018270	lrpprc	92	76.892	Oryzias_latipes_hsok
ENSGACG00000010679	lrpprc	99	50.480	ENSOGAG00000012798	LRPPRC	99	49.716	Otolemur_garnettii
ENSGACG00000010679	lrpprc	99	51.701	ENSOARG00000006522	LRPPRC	99	51.138	Ovis_aries
ENSGACG00000010679	lrpprc	99	48.820	ENSPPAG00000040876	LRPPRC	98	56.226	Pan_paniscus
ENSGACG00000010679	lrpprc	99	52.406	ENSPPRG00000006578	LRPPRC	99	51.673	Panthera_pardus
ENSGACG00000010679	lrpprc	99	52.554	ENSPTIG00000000933	LRPPRC	96	52.203	Panthera_tigris_altaica
ENSGACG00000010679	lrpprc	99	49.741	ENSPTRG00000011880	LRPPRC	98	56.762	Pan_troglodytes
ENSGACG00000010679	lrpprc	99	50.591	ENSPANG00000020731	LRPPRC	98	56.571	Papio_anubis
ENSGACG00000010679	lrpprc	99	48.971	ENSPKIG00000022232	lrpprc	96	64.286	Paramormyrops_kingsleyae
ENSGACG00000010679	lrpprc	64	53.555	ENSPSIG00000006830	-	99	53.723	Pelodiscus_sinensis
ENSGACG00000010679	lrpprc	70	62.040	ENSPMGG00000016597	lrpprc	97	62.487	Periophthalmus_magnuspinnatus
ENSGACG00000010679	lrpprc	98	46.281	ENSPMAG00000002147	lrpprc	99	46.281	Petromyzon_marinus
ENSGACG00000010679	lrpprc	99	71.164	ENSPFOG00000011227	lrpprc	99	69.121	Poecilia_formosa
ENSGACG00000010679	lrpprc	99	70.719	ENSPLAG00000004018	lrpprc	99	68.573	Poecilia_latipinna
ENSGACG00000010679	lrpprc	99	71.090	ENSPMEG00000016425	lrpprc	99	68.927	Poecilia_mexicana
ENSGACG00000010679	lrpprc	99	70.772	ENSPREG00000003662	lrpprc	99	68.551	Poecilia_reticulata
ENSGACG00000010679	lrpprc	59	44.883	ENSPPYG00000029532	-	99	44.883	Pongo_abelii
ENSGACG00000010679	lrpprc	81	54.528	ENSPCAG00000001430	LRPPRC	84	52.496	Procavia_capensis
ENSGACG00000010679	lrpprc	99	49.593	ENSPVAG00000002007	LRPPRC	99	48.720	Pteropus_vampyrus
ENSGACG00000010679	lrpprc	99	68.199	ENSPNYG00000000756	lrpprc	90	79.167	Pundamilia_nyererei
ENSGACG00000010679	lrpprc	99	65.328	ENSPNAG00000002895	lrpprc	99	63.066	Pygocentrus_nattereri
ENSGACG00000010679	lrpprc	99	50.481	ENSRNOG00000005877	Lrpprc	99	49.434	Rattus_norvegicus
ENSGACG00000010679	lrpprc	99	49.632	ENSRBIG00000031552	LRPPRC	99	49.646	Rhinopithecus_bieti
ENSGACG00000010679	lrpprc	99	50.851	ENSSBOG00000011807	LRPPRC	97	56.979	Saimiri_boliviensis_boliviensis
ENSGACG00000010679	lrpprc	99	51.365	ENSSHAG00000018725	LRPPRC	99	51.371	Sarcophilus_harrisii
ENSGACG00000010679	lrpprc	99	55.523	ENSSFOG00015001042	lrpprc	99	54.077	Scleropages_formosus
ENSGACG00000010679	lrpprc	99	74.465	ENSSDUG00000019062	lrpprc	99	72.082	Seriola_dumerili
ENSGACG00000010679	lrpprc	99	57.195	ENSSLDG00000023028	lrpprc	99	56.901	Seriola_lalandi_dorsalis
ENSGACG00000010679	lrpprc	96	48.214	ENSSARG00000000426	LRPPRC	99	48.214	Sorex_araneus
ENSGACG00000010679	lrpprc	99	64.317	ENSSPAG00000000162	lrpprc	99	63.322	Stegastes_partitus
ENSGACG00000010679	lrpprc	99	51.331	ENSSSCG00000008452	LRPPRC	99	50.570	Sus_scrofa
ENSGACG00000010679	lrpprc	98	47.940	ENSTGUG00000003759	LRPPRC	99	47.940	Taeniopygia_guttata
ENSGACG00000010679	lrpprc	99	70.392	ENSTRUG00000008409	lrpprc	96	67.281	Takifugu_rubripes
ENSGACG00000010679	lrpprc	99	69.934	ENSTNIG00000007470	lrpprc	99	69.934	Tetraodon_nigroviridis
ENSGACG00000010679	lrpprc	99	49.482	ENSTTRG00000006403	LRPPRC	99	48.862	Tursiops_truncatus
ENSGACG00000010679	lrpprc	99	47.964	ENSVPAG00000008993	LRPPRC	99	48.110	Vicugna_pacos
ENSGACG00000010679	lrpprc	99	56.195	ENSXETG00000009296	lrpprc	99	54.552	Xenopus_tropicalis
ENSGACG00000010679	lrpprc	98	65.991	ENSXCOG00000013343	lrpprc	100	69.923	Xiphophorus_couchianus
ENSGACG00000010679	lrpprc	99	72.181	ENSXMAG00000018108	lrpprc	99	69.894	Xiphophorus_maculatus