EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000011332 (Gene tree)
Gene ID: -
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 10573 bases
Position: chrgroupXI:9977715-9988287
Accession: ZDB-GENE-061110-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000014979	MMR_HSR1	PF01926.23	9.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000015007	-	1441	-	ENSGACP00000014979	455 (aa)	-	G3PBK5

Gene Model

Click here to download ENSGACG00000011332's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000011332's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000011332	srl	58	38.346	ENSGACG00000007320	-	73	31.504
ENSGACG00000011332	srl	93	30.425	ENSGACG00000017605	ehd1a	75	30.425
ENSGACG00000011332	srl	99	75.161	ENSGACG00000018766	SRL	94	75.161
ENSGACG00000011332	srl	84	32.727	ENSGACG00000013160	ehd3	67	33.083
ENSGACG00000011332	srl	93	33.097	ENSGACG00000013023	ehd2b	74	33.097

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000011332	srl	99	80.795	ENSG00000185739	SRL	99	80.952	Homo_sapiens
ENSGACG00000011332	srl	100	94.505	ENSAPOG00000018093	srl	99	94.248	Acanthochromis_polyacanthus
ENSGACG00000011332	srl	99	75.551	ENSAPOG00000012432	SRL	98	75.551	Acanthochromis_polyacanthus
ENSGACG00000011332	srl	99	80.574	ENSAMEG00000010862	SRL	50	80.574	Ailuropoda_melanoleuca
ENSGACG00000011332	srl	100	73.846	ENSACIG00000015419	SRL	99	73.846	Amphilophus_citrinellus
ENSGACG00000011332	srl	100	94.505	ENSACIG00000015799	srl	98	94.505	Amphilophus_citrinellus
ENSGACG00000011332	srl	99	75.824	ENSAOCG00000017049	SRL	96	76.044	Amphiprion_ocellaris
ENSGACG00000011332	srl	98	94.607	ENSAOCG00000007574	srl	99	94.607	Amphiprion_ocellaris
ENSGACG00000011332	srl	99	71.586	ENSAPEG00000006533	SRL	96	72.747	Amphiprion_percula
ENSGACG00000011332	srl	100	97.143	ENSAPEG00000006911	srl	94	97.143	Amphiprion_percula
ENSGACG00000011332	srl	100	97.582	ENSATEG00000024315	srl	94	97.582	Anabas_testudineus
ENSGACG00000011332	srl	99	74.090	ENSATEG00000009643	SRL	52	74.304	Anabas_testudineus
ENSGACG00000011332	srl	99	84.071	ENSACAG00000016380	SRL	83	83.736	Anolis_carolinensis
ENSGACG00000011332	srl	99	72.805	ENSACLG00000024674	SRL	54	77.694	Astatotilapia_calliptera
ENSGACG00000011332	srl	100	96.703	ENSACLG00000027685	srl	97	94.286	Astatotilapia_calliptera
ENSGACG00000011332	srl	95	75.463	ENSAMXG00000038693	SRL	99	71.983	Astyanax_mexicanus
ENSGACG00000011332	srl	100	92.967	ENSAMXG00000018789	srl	87	92.967	Astyanax_mexicanus
ENSGACG00000011332	srl	99	81.015	ENSBTAG00000001078	SRL	56	81.015	Bos_taurus
ENSGACG00000011332	srl	99	80.795	ENSCJAG00000019750	SRL	93	80.795	Callithrix_jacchus
ENSGACG00000011332	srl	99	80.574	ENSCAFG00000019233	SRL	82	80.574	Canis_familiaris
ENSGACG00000011332	srl	99	80.574	ENSCAFG00020025024	SRL	54	80.574	Canis_lupus_dingo
ENSGACG00000011332	srl	99	81.015	ENSCHIG00000017927	SRL	55	81.015	Capra_hircus
ENSGACG00000011332	srl	99	81.236	ENSTSYG00000007919	SRL	99	81.633	Carlito_syrichta
ENSGACG00000011332	srl	99	81.015	ENSCPOG00000012643	SRL	93	81.015	Cavia_porcellus
ENSGACG00000011332	srl	99	75.717	ENSCCAG00000032646	SRL	99	84.392	Cebus_capucinus
ENSGACG00000011332	srl	99	80.795	ENSCATG00000032227	-	93	80.795	Cercocebus_atys
ENSGACG00000011332	srl	99	81.236	ENSCLAG00000016242	SRL	93	81.236	Chinchilla_lanigera
ENSGACG00000011332	srl	85	85.714	ENSCHOG00000001618	SRL	52	85.714	Choloepus_hoffmanni
ENSGACG00000011332	srl	97	85.492	ENSCPBG00000026371	SRL	93	82.965	Chrysemys_picta_bellii
ENSGACG00000011332	srl	94	59.579	ENSCING00000005231	-	93	59.579	Ciona_intestinalis
ENSGACG00000011332	srl	99	80.795	ENSCANG00000035872	SRL	99	80.952	Colobus_angolensis_palliatus
ENSGACG00000011332	srl	99	81.898	ENSCGRG00001016630	Srl	93	81.898	Cricetulus_griseus_chok1gshd
ENSGACG00000011332	srl	99	81.898	ENSCGRG00000005458	Srl	93	81.898	Cricetulus_griseus_crigri
ENSGACG00000011332	srl	100	95.824	ENSCSEG00000016151	srl	94	95.824	Cynoglossus_semilaevis
ENSGACG00000011332	srl	99	73.846	ENSCSEG00000011866	SRL	89	74.066	Cynoglossus_semilaevis
ENSGACG00000011332	srl	99	94.714	ENSCVAG00000003513	srl	94	94.714	Cyprinodon_variegatus
ENSGACG00000011332	srl	100	75.269	ENSCVAG00000022465	SRL	60	75.269	Cyprinodon_variegatus
ENSGACG00000011332	srl	100	93.407	ENSDARG00000104587	srl	94	93.407	Danio_rerio
ENSGACG00000011332	srl	83	78.590	ENSDARG00000112959	CABZ01072309.1	99	78.590	Danio_rerio
ENSGACG00000011332	srl	99	81.015	ENSDNOG00000011643	SRL	53	81.015	Dasypus_novemcinctus
ENSGACG00000011332	srl	99	81.678	ENSDORG00000014807	Srl	93	81.678	Dipodomys_ordii
ENSGACG00000011332	srl	82	64.706	ENSEBUG00000015937	srl	94	64.706	Eptatretus_burgeri
ENSGACG00000011332	srl	99	81.015	ENSEASG00005000942	SRL	53	81.015	Equus_asinus_asinus
ENSGACG00000011332	srl	99	81.015	ENSECAG00000024219	SRL	93	81.015	Equus_caballus
ENSGACG00000011332	srl	100	88.840	ENSELUG00000015616	srl	94	88.840	Esox_lucius
ENSGACG00000011332	srl	99	80.353	ENSFCAG00000022075	SRL	93	80.353	Felis_catus
ENSGACG00000011332	srl	99	80.531	ENSFALG00000004328	SRL	63	80.531	Ficedula_albicollis
ENSGACG00000011332	srl	99	81.898	ENSFDAG00000006199	SRL	93	81.898	Fukomys_damarensis
ENSGACG00000011332	srl	100	75.165	ENSFHEG00000011854	SRL	99	75.385	Fundulus_heteroclitus
ENSGACG00000011332	srl	100	94.945	ENSFHEG00000011239	srl	94	94.945	Fundulus_heteroclitus
ENSGACG00000011332	srl	99	92.511	ENSGMOG00000014954	srl	100	92.511	Gadus_morhua
ENSGACG00000011332	srl	99	82.743	ENSGALG00000038884	SRL	93	80.752	Gallus_gallus
ENSGACG00000011332	srl	100	76.484	ENSGAFG00000016984	SRL	99	76.484	Gambusia_affinis
ENSGACG00000011332	srl	100	94.286	ENSGAFG00000000010	srl	94	94.286	Gambusia_affinis
ENSGACG00000011332	srl	99	80.795	ENSGGOG00000011312	-	93	80.795	Gorilla_gorilla
ENSGACG00000011332	srl	99	73.233	ENSHBUG00000015710	SRL	57	73.233	Haplochromis_burtoni
ENSGACG00000011332	srl	100	96.703	ENSHBUG00000007581	srl	97	94.286	Haplochromis_burtoni
ENSGACG00000011332	srl	99	81.678	ENSHGLG00000015271	SRL	93	81.678	Heterocephalus_glaber_female
ENSGACG00000011332	srl	99	81.678	ENSHGLG00100019378	SRL	93	81.678	Heterocephalus_glaber_male
ENSGACG00000011332	srl	99	72.747	ENSHCOG00000001012	SRL	50	72.747	Hippocampus_comes
ENSGACG00000011332	srl	100	95.385	ENSHCOG00000008687	srl	98	93.187	Hippocampus_comes
ENSGACG00000011332	srl	100	92.088	ENSIPUG00000012513	srl	94	92.088	Ictalurus_punctatus
ENSGACG00000011332	srl	98	68.304	ENSIPUG00000011609	SRL	95	68.304	Ictalurus_punctatus
ENSGACG00000011332	srl	99	81.457	ENSSTOG00000021151	-	93	81.457	Ictidomys_tridecemlineatus
ENSGACG00000011332	srl	99	82.119	ENSJJAG00000016400	Srl	93	82.119	Jaculus_jaculus
ENSGACG00000011332	srl	98	95.067	ENSKMAG00000014115	srl	93	93.056	Kryptolebias_marmoratus
ENSGACG00000011332	srl	99	75.221	ENSKMAG00000019537	SRL	99	75.221	Kryptolebias_marmoratus
ENSGACG00000011332	srl	100	96.264	ENSLBEG00000026643	srl	94	96.264	Labrus_bergylta
ENSGACG00000011332	srl	99	73.951	ENSLBEG00000013811	SRL	95	74.172	Labrus_bergylta
ENSGACG00000011332	srl	99	84.327	ENSLACG00000002825	SRL	98	82.561	Latimeria_chalumnae
ENSGACG00000011332	srl	99	86.784	ENSLOCG00000002644	srl	94	86.784	Lepisosteus_oculatus
ENSGACG00000011332	srl	99	80.574	ENSLAFG00000006329	SRL	50	80.574	Loxodonta_africana
ENSGACG00000011332	srl	97	80.952	ENSMFAG00000037383	SRL	99	80.952	Macaca_fascicularis
ENSGACG00000011332	srl	99	80.795	ENSMNEG00000019236	-	93	80.795	Macaca_nemestrina
ENSGACG00000011332	srl	99	73.731	ENSMLEG00000032156	SRL	93	73.731	Mandrillus_leucophaeus
ENSGACG00000011332	srl	100	94.725	ENSMAMG00000023322	srl	94	94.725	Mastacembelus_armatus
ENSGACG00000011332	srl	99	73.333	ENSMAMG00000013756	SRL	53	73.333	Mastacembelus_armatus
ENSGACG00000011332	srl	99	73.019	ENSMZEG00005004010	SRL	57	73.019	Maylandia_zebra
ENSGACG00000011332	srl	100	96.703	ENSMZEG00005004548	srl	97	94.286	Maylandia_zebra
ENSGACG00000011332	srl	99	80.752	ENSMGAG00000009342	SRL	92	82.759	Meleagris_gallopavo
ENSGACG00000011332	srl	99	80.837	ENSMICG00000032307	SRL	93	80.837	Microcebus_murinus
ENSGACG00000011332	srl	99	81.236	ENSMOCG00000008208	Srl	93	81.236	Microtus_ochrogaster
ENSGACG00000011332	srl	100	94.286	ENSMMOG00000013970	srl	98	94.286	Mola_mola
ENSGACG00000011332	srl	99	74.449	ENSMMOG00000021572	SRL	99	74.449	Mola_mola
ENSGACG00000011332	srl	99	81.678	ENSMODG00000016380	-	50	81.678	Monodelphis_domestica
ENSGACG00000011332	srl	99	92.952	ENSMALG00000005039	srl	98	92.952	Monopterus_albus
ENSGACG00000011332	srl	95	75.814	ENSMALG00000000670	SRL	98	75.814	Monopterus_albus
ENSGACG00000011332	srl	99	82.561	MGP_CAROLIEiJ_G0020400	Srl	93	82.561	Mus_caroli
ENSGACG00000011332	srl	99	82.561	ENSMUSG00000022519	Srl	93	82.561	Mus_musculus
ENSGACG00000011332	srl	99	82.561	MGP_SPRETEiJ_G0021294	Srl	93	82.561	Mus_spretus
ENSGACG00000011332	srl	99	80.574	ENSMPUG00000015025	SRL	53	80.574	Mustela_putorius_furo
ENSGACG00000011332	srl	99	81.457	ENSMLUG00000030733	SRL	55	81.457	Myotis_lucifugus
ENSGACG00000011332	srl	99	82.340	ENSNGAG00000019741	Srl	93	82.340	Nannospalax_galili
ENSGACG00000011332	srl	100	94.066	ENSNBRG00000023775	srl	94	94.066	Neolamprologus_brichardi
ENSGACG00000011332	srl	99	73.019	ENSNBRG00000002422	SRL	56	74.266	Neolamprologus_brichardi
ENSGACG00000011332	srl	99	75.055	ENSNLEG00000029051	SRL	93	75.055	Nomascus_leucogenys
ENSGACG00000011332	srl	99	75.276	ENSOPRG00000000477	-	52	75.276	Ochotona_princeps
ENSGACG00000011332	srl	99	81.678	ENSODEG00000013256	SRL	93	81.678	Octodon_degus
ENSGACG00000011332	srl	100	96.703	ENSONIG00000005192	srl	94	96.703	Oreochromis_niloticus
ENSGACG00000011332	srl	100	95.385	ENSORLG00000008291	srl	93	95.153	Oryzias_latipes
ENSGACG00000011332	srl	100	73.187	ENSORLG00000015064	SRL	97	73.187	Oryzias_latipes
ENSGACG00000011332	srl	100	95.824	ENSORLG00020019784	srl	81	95.824	Oryzias_latipes_hni
ENSGACG00000011332	srl	100	73.407	ENSORLG00020018173	SRL	97	73.407	Oryzias_latipes_hni
ENSGACG00000011332	srl	100	73.407	ENSORLG00015019063	SRL	97	73.407	Oryzias_latipes_hsok
ENSGACG00000011332	srl	100	95.385	ENSORLG00015009342	srl	91	95.385	Oryzias_latipes_hsok
ENSGACG00000011332	srl	100	95.165	ENSOMEG00000010006	srl	97	92.683	Oryzias_melastigma
ENSGACG00000011332	srl	100	72.009	ENSOMEG00000005682	SRL	53	72.436	Oryzias_melastigma
ENSGACG00000011332	srl	100	80.220	ENSOGAG00000029266	SRL	54	80.220	Otolemur_garnettii
ENSGACG00000011332	srl	99	81.015	ENSOARG00000003074	SRL	55	81.015	Ovis_aries
ENSGACG00000011332	srl	99	80.795	ENSPPAG00000024919	-	99	80.952	Pan_paniscus
ENSGACG00000011332	srl	99	80.353	ENSPPRG00000010274	SRL	99	80.726	Panthera_pardus
ENSGACG00000011332	srl	99	80.353	ENSPTIG00000015162	SRL	99	80.726	Panthera_tigris_altaica
ENSGACG00000011332	srl	99	80.795	ENSPTRG00000007712	SRL	99	80.952	Pan_troglodytes
ENSGACG00000011332	srl	99	80.795	ENSPANG00000013804	SRL	95	80.795	Papio_anubis
ENSGACG00000011332	srl	100	91.429	ENSPKIG00000006405	srl	94	91.429	Paramormyrops_kingsleyae
ENSGACG00000011332	srl	100	78.681	ENSPKIG00000024974	SRL	88	78.681	Paramormyrops_kingsleyae
ENSGACG00000011332	srl	100	80.220	ENSPSIG00000008586	SRL	50	80.220	Pelodiscus_sinensis
ENSGACG00000011332	srl	99	73.348	ENSPMGG00000023505	-	99	73.348	Periophthalmus_magnuspinnatus
ENSGACG00000011332	srl	99	91.611	ENSPMGG00000021081	srl	95	91.611	Periophthalmus_magnuspinnatus
ENSGACG00000011332	srl	99	81.457	ENSPEMG00000015842	Srl	93	81.457	Peromyscus_maniculatus_bairdii
ENSGACG00000011332	srl	95	67.735	ENSPMAG00000004786	srl	99	67.735	Petromyzon_marinus
ENSGACG00000011332	srl	99	81.236	ENSPCIG00000012128	SRL	96	81.236	Phascolarctos_cinereus
ENSGACG00000011332	srl	100	94.505	ENSPFOG00000011408	srl	94	94.505	Poecilia_formosa
ENSGACG00000011332	srl	100	75.165	ENSPLAG00000002932	SRL	99	75.165	Poecilia_latipinna
ENSGACG00000011332	srl	100	92.088	ENSPLAG00000008017	srl	96	92.088	Poecilia_latipinna
ENSGACG00000011332	srl	100	73.718	ENSPMEG00000005890	SRL	60	73.291	Poecilia_mexicana
ENSGACG00000011332	srl	100	92.088	ENSPMEG00000006745	srl	96	92.088	Poecilia_mexicana
ENSGACG00000011332	srl	100	76.044	ENSPREG00000000315	SRL	99	76.044	Poecilia_reticulata
ENSGACG00000011332	srl	100	94.725	ENSPREG00000007751	srl	98	92.308	Poecilia_reticulata
ENSGACG00000011332	srl	95	82.326	ENSPPYG00000007053	SRL	97	82.326	Pongo_abelii
ENSGACG00000011332	srl	99	81.015	ENSPCAG00000003378	-	50	81.015	Procavia_capensis
ENSGACG00000011332	srl	99	80.837	ENSPCOG00000023135	SRL	99	81.406	Propithecus_coquereli
ENSGACG00000011332	srl	99	81.236	ENSPVAG00000006586	SRL	54	81.236	Pteropus_vampyrus
ENSGACG00000011332	srl	100	96.484	ENSPNYG00000001200	srl	97	94.066	Pundamilia_nyererei
ENSGACG00000011332	srl	99	73.019	ENSPNYG00000003423	SRL	57	73.019	Pundamilia_nyererei
ENSGACG00000011332	srl	99	73.894	ENSPNAG00000007361	-	91	73.894	Pygocentrus_nattereri
ENSGACG00000011332	srl	100	92.747	ENSPNAG00000023106	srl	94	92.747	Pygocentrus_nattereri
ENSGACG00000011332	srl	99	80.795	ENSSBOG00000029273	SRL	93	80.795	Saimiri_boliviensis_boliviensis
ENSGACG00000011332	srl	100	92.088	ENSSFOG00015009773	srl	94	92.088	Scleropages_formosus
ENSGACG00000011332	srl	99	73.391	ENSSMAG00000002232	SRL	50	73.391	Scophthalmus_maximus
ENSGACG00000011332	srl	100	96.703	ENSSMAG00000016274	srl	97	94.505	Scophthalmus_maximus
ENSGACG00000011332	srl	100	94.505	ENSSDUG00000010808	srl	98	94.505	Seriola_dumerili
ENSGACG00000011332	srl	99	75.271	ENSSDUG00000009161	SRL	98	75.271	Seriola_dumerili
ENSGACG00000011332	srl	100	96.923	ENSSLDG00000022024	srl	94	96.923	Seriola_lalandi_dorsalis
ENSGACG00000011332	srl	99	75.053	ENSSLDG00000014601	SRL	99	75.589	Seriola_lalandi_dorsalis
ENSGACG00000011332	srl	100	80.482	ENSSPUG00000016859	SRL	98	80.482	Sphenodon_punctatus
ENSGACG00000011332	srl	99	76.770	ENSSPAG00000014254	SRL	98	76.770	Stegastes_partitus
ENSGACG00000011332	srl	99	97.577	ENSSPAG00000019105	srl	94	97.577	Stegastes_partitus
ENSGACG00000011332	srl	99	80.795	ENSSSCG00000007949	SRL	98	80.795	Sus_scrofa
ENSGACG00000011332	srl	99	80.752	ENSTGUG00000003951	-	97	80.752	Taeniopygia_guttata
ENSGACG00000011332	srl	80	85.083	ENSTGUG00000016121	-	100	85.083	Taeniopygia_guttata
ENSGACG00000011332	srl	100	96.044	ENSTRUG00000006005	srl	94	96.044	Takifugu_rubripes
ENSGACG00000011332	srl	95	76.279	ENSTRUG00000013310	SRL	55	76.279	Takifugu_rubripes
ENSGACG00000011332	srl	100	93.626	ENSTNIG00000009739	srl	94	93.626	Tetraodon_nigroviridis
ENSGACG00000011332	srl	99	80.574	ENSUAMG00000005701	SRL	55	80.574	Ursus_americanus
ENSGACG00000011332	srl	99	80.574	ENSUMAG00000002574	SRL	54	80.574	Ursus_maritimus
ENSGACG00000011332	srl	99	80.574	ENSXETG00000017313	srl	98	80.396	Xenopus_tropicalis
ENSGACG00000011332	srl	100	76.264	ENSXCOG00000014584	SRL	98	76.264	Xiphophorus_couchianus
ENSGACG00000011332	srl	95	91.435	ENSXCOG00000010424	srl	96	91.435	Xiphophorus_couchianus
ENSGACG00000011332	srl	100	73.932	ENSXMAG00000027598	SRL	62	73.932	Xiphophorus_maculatus
ENSGACG00000011332	srl	100	94.286	ENSXMAG00000004625	srl	90	94.286	Xiphophorus_maculatus