EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000011761 (Gene tree)
Gene ID: -
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine/arginine-rich splicing factor 5a
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 4106 bases
Position: chrgroupXV:11548363-11552468
Accession: ZDB-GENE-030131-7336
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000015556	RRM_1	PF00076.22	1e-32	1	2
ENSGACP00000015556	RRM_1	PF00076.22	1e-32	2	2
ENSGACP00000015556	RRM_3	PF08777.11	1.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000015587	-	851	-	ENSGACP00000015556	254 (aa)	-	G3PD82

Gene Model

Click here to download ENSGACG00000011761's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000011761's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000011761	srsf5a	70	37.745	ENSGACG00000016921	srsf9	75	40.206
ENSGACG00000011761	srsf5a	70	53.036	ENSGACG00000007834	srsf5b	86	63.235
ENSGACG00000011761	srsf5a	69	64.943	ENSGACG00000002389	srsf4	54	58.201
ENSGACG00000011761	srsf5a	69	65.143	ENSGACG00000006084	srsf6a	52	61.878
ENSGACG00000011761	srsf5a	65	42.690	ENSGACG00000020621	srsf1b	66	39.766
ENSGACG00000011761	srsf5a	65	43.275	ENSGACG00000011094	-	88	45.614

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000011761	srsf5a	70	89.305	ENSACIG00000011892	srsf5a	96	87.313	Amphilophus_citrinellus
ENSGACG00000011761	srsf5a	70	90.374	ENSATEG00000000198	srsf5a	100	75.779	Anabas_testudineus
ENSGACG00000011761	srsf5a	70	77.778	ENSAPLG00000002469	-	70	77.222	Anas_platyrhynchos
ENSGACG00000011761	srsf5a	70	79.213	ENSACAG00000029015	-	68	79.213	Anolis_carolinensis
ENSGACG00000011761	srsf5a	70	86.486	ENSAMXG00000030476	srsf5a	67	86.486	Astyanax_mexicanus
ENSGACG00000011761	srsf5a	70	81.006	ENSCPBG00000021518	-	70	81.006	Chrysemys_picta_bellii
ENSGACG00000011761	srsf5a	70	53.571	ENSCSAVG00000011376	-	78	54.082	Ciona_savignyi
ENSGACG00000011761	srsf5a	70	87.565	ENSCSEG00000008109	srsf5a	62	87.565	Cynoglossus_semilaevis
ENSGACG00000011761	srsf5a	69	80.319	ENSCVAG00000016982	srsf5a	96	74.436	Cyprinodon_variegatus
ENSGACG00000011761	srsf5a	72	85.638	ENSDARG00000029818	srsf5a	100	84.962	Danio_rerio
ENSGACG00000011761	srsf5a	70	81.347	ENSELUG00000020439	srsf5a	62	79.275	Esox_lucius
ENSGACG00000011761	srsf5a	70	76.111	ENSFALG00000005098	-	64	77.528	Ficedula_albicollis
ENSGACG00000011761	srsf5a	70	79.775	ENSFHEG00000003955	srsf5a	97	69.655	Fundulus_heteroclitus
ENSGACG00000011761	srsf5a	70	89.326	ENSGMOG00000000869	srsf5a	94	91.573	Gadus_morhua
ENSGACG00000011761	srsf5a	70	77.654	ENSGALG00000033259	SRSF5A	63	77.528	Gallus_gallus
ENSGACG00000011761	srsf5a	70	79.213	ENSGAFG00000018237	srsf5a	54	79.213	Gambusia_affinis
ENSGACG00000011761	srsf5a	70	81.006	ENSGAGG00000007312	-	70	81.006	Gopherus_agassizii
ENSGACG00000011761	srsf5a	95	74.510	ENSIPUG00000003439	srsf5a	92	70.980	Ictalurus_punctatus
ENSGACG00000011761	srsf5a	70	84.615	ENSLBEG00000017153	srsf5a	74	85.641	Labrus_bergylta
ENSGACG00000011761	srsf5a	70	85.556	ENSLACG00000017874	-	70	85.000	Latimeria_chalumnae
ENSGACG00000011761	srsf5a	70	85.946	ENSLOCG00000014075	srsf5a	61	85.946	Lepisosteus_oculatus
ENSGACG00000011761	srsf5a	75	75.521	ENSMGAG00000011888	-	96	78.750	Meleagris_gallopavo
ENSGACG00000011761	srsf5a	100	83.333	ENSMMOG00000009793	srsf5a	61	94.444	Mola_mola
ENSGACG00000011761	srsf5a	70	88.202	ENSMALG00000021194	srsf5a	63	89.326	Monopterus_albus
ENSGACG00000011761	srsf5a	71	92.391	ENSORLG00000009268	srsf5a	67	91.160	Oryzias_latipes
ENSGACG00000011761	srsf5a	71	92.391	ENSORLG00020003281	srsf5	67	91.160	Oryzias_latipes_hni
ENSGACG00000011761	srsf5a	71	92.391	ENSORLG00015023075	srsf5	67	91.160	Oryzias_latipes_hsok
ENSGACG00000011761	srsf5a	70	91.667	ENSOMEG00000000628	srsf5a	66	91.667	Oryzias_melastigma
ENSGACG00000011761	srsf5a	70	86.559	ENSPKIG00000002054	srsf5a	68	85.484	Paramormyrops_kingsleyae
ENSGACG00000011761	srsf5a	70	80.447	ENSPSIG00000008238	-	69	79.888	Pelodiscus_sinensis
ENSGACG00000011761	srsf5a	71	81.622	ENSPMGG00000020125	srsf5a	55	80.874	Periophthalmus_magnuspinnatus
ENSGACG00000011761	srsf5a	70	82.199	ENSPFOG00000022993	srsf5a	60	82.199	Poecilia_formosa
ENSGACG00000011761	srsf5a	70	82.105	ENSPLAG00000005508	srsf5a	59	82.105	Poecilia_latipinna
ENSGACG00000011761	srsf5a	70	82.199	ENSPMEG00000016339	srsf5a	60	82.199	Poecilia_mexicana
ENSGACG00000011761	srsf5a	70	81.771	ENSPREG00000018091	srsf5a	61	81.771	Poecilia_reticulata
ENSGACG00000011761	srsf5a	70	78.238	ENSPNAG00000021333	srsf5a	66	84.783	Pygocentrus_nattereri
ENSGACG00000011761	srsf5a	70	86.022	ENSSFOG00015008377	srsf5	66	86.022	Scleropages_formosus
ENSGACG00000011761	srsf5a	70	75.843	ENSSPUG00000002052	-	68	75.843	Sphenodon_punctatus
ENSGACG00000011761	srsf5a	70	89.617	ENSSPAG00000002821	srsf5a	100	75.085	Stegastes_partitus
ENSGACG00000011761	srsf5a	70	78.090	ENSTGUG00000011492	-	68	77.528	Taeniopygia_guttata
ENSGACG00000011761	srsf5a	76	76.733	ENSXETG00000017937	srsf5a	72	79.787	Xenopus_tropicalis
ENSGACG00000011761	srsf5a	70	82.353	ENSXCOG00000015338	srsf5a	61	82.353	Xiphophorus_couchianus
ENSGACG00000011761	srsf5a	70	81.347	ENSXMAG00000012823	srsf5a	61	81.865	Xiphophorus_maculatus