EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000011870 (Gene tree)
Gene ID: -
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 12588 bases
Position: chrgroupXVIII:12547951-12560538
Accession: ZDB-GENE-040426-2874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000015713	XRN_N	PF03159.18	1.4e-100	1	1
ENSGACP00000015710	XRN_N	PF03159.18	3.5e-100	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000015741	-	2555	-	ENSGACP00000015710	807 (aa)	-	G3PDN6
ENSGACT00000015744	-	1751	-	ENSGACP00000015713	539 (aa)	-	G3PDN9

Gene Model

Click here to download ENSGACG00000011870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000011870's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000011870	xrn2	100	74.519	ENSG00000088930	XRN2	87	74.519	Homo_sapiens
ENSGACG00000011870	xrn2	96	90.135	ENSAPOG00000009818	xrn2	86	85.663	Acanthochromis_polyacanthus
ENSGACG00000011870	xrn2	100	74.760	ENSAMEG00000012581	XRN2	87	74.760	Ailuropoda_melanoleuca
ENSGACG00000011870	xrn2	96	85.907	ENSACIG00000015047	xrn2	94	86.074	Amphilophus_citrinellus
ENSGACG00000011870	xrn2	96	90.716	ENSAOCG00000023632	xrn2	86	85.442	Amphiprion_ocellaris
ENSGACG00000011870	xrn2	96	90.522	ENSAPEG00000014871	xrn2	86	85.322	Amphiprion_percula
ENSGACG00000011870	xrn2	96	92.514	ENSATEG00000001273	xrn2	87	84.899	Anabas_testudineus
ENSGACG00000011870	xrn2	97	74.938	ENSAPLG00000013869	XRN2	87	74.938	Anas_platyrhynchos
ENSGACG00000011870	xrn2	99	74.341	ENSACAG00000005565	XRN2	87	74.341	Anolis_carolinensis
ENSGACG00000011870	xrn2	100	74.639	ENSANAG00000020126	XRN2	87	74.639	Aotus_nancymaae
ENSGACG00000011870	xrn2	100	81.026	ENSACLG00000010522	xrn2	94	84.913	Astatotilapia_calliptera
ENSGACG00000011870	xrn2	96	86.372	ENSAMXG00000018301	xrn2	87	81.310	Astyanax_mexicanus
ENSGACG00000011870	xrn2	96	77.992	ENSBTAG00000011304	XRN2	87	74.368	Bos_taurus
ENSGACG00000011870	xrn2	96	55.805	WBGene00006964	xrn-2	88	52.619	Caenorhabditis_elegans
ENSGACG00000011870	xrn2	100	74.519	ENSCJAG00000005611	XRN2	87	74.519	Callithrix_jacchus
ENSGACG00000011870	xrn2	100	74.639	ENSCAFG00000005185	XRN2	87	74.639	Canis_familiaris
ENSGACG00000011870	xrn2	100	74.639	ENSCAFG00020027479	XRN2	87	74.639	Canis_lupus_dingo
ENSGACG00000011870	xrn2	96	77.413	ENSCHIG00000006921	XRN2	87	74.248	Capra_hircus
ENSGACG00000011870	xrn2	100	74.609	ENSTSYG00000008315	XRN2	87	74.609	Carlito_syrichta
ENSGACG00000011870	xrn2	97	64.439	ENSCAPG00000010773	XRN2	85	62.825	Cavia_aperea
ENSGACG00000011870	xrn2	100	75.120	ENSCPOG00000009407	XRN2	87	75.120	Cavia_porcellus
ENSGACG00000011870	xrn2	100	74.399	ENSCATG00000040350	XRN2	88	74.399	Cercocebus_atys
ENSGACG00000011870	xrn2	100	75.000	ENSCLAG00000013419	XRN2	87	75.000	Chinchilla_lanigera
ENSGACG00000011870	xrn2	100	74.399	ENSCSAG00000011094	XRN2	87	74.399	Chlorocebus_sabaeus
ENSGACG00000011870	xrn2	69	88.710	ENSCHOG00000013404	XRN2	63	88.710	Choloepus_hoffmanni
ENSGACG00000011870	xrn2	99	75.390	ENSCPBG00000023533	XRN2	87	75.390	Chrysemys_picta_bellii
ENSGACG00000011870	xrn2	91	66.398	ENSCING00000022336	-	100	59.737	Ciona_intestinalis
ENSGACG00000011870	xrn2	99	59.509	ENSCSAVG00000011217	-	100	64.752	Ciona_savignyi
ENSGACG00000011870	xrn2	100	74.399	ENSCANG00000040240	XRN2	87	74.399	Colobus_angolensis_palliatus
ENSGACG00000011870	xrn2	100	75.422	ENSCGRG00001010676	Xrn2	89	75.422	Cricetulus_griseus_chok1gshd
ENSGACG00000011870	xrn2	97	74.534	ENSCGRG00000006378	Xrn2	87	74.534	Cricetulus_griseus_crigri
ENSGACG00000011870	xrn2	96	82.171	ENSCSEG00000005628	xrn2	100	82.171	Cynoglossus_semilaevis
ENSGACG00000011870	xrn2	96	88.484	ENSCVAG00000018999	xrn2	97	88.676	Cyprinodon_variegatus
ENSGACG00000011870	xrn2	100	83.210	ENSDARG00000101900	xrn2	100	83.210	Danio_rerio
ENSGACG00000011870	xrn2	100	74.760	ENSDNOG00000001895	XRN2	87	74.760	Dasypus_novemcinctus
ENSGACG00000011870	xrn2	96	77.992	ENSDORG00000005434	Xrn2	87	73.317	Dipodomys_ordii
ENSGACG00000011870	xrn2	99	57.285	FBgn0031868	Rat1	88	56.914	Drosophila_melanogaster
ENSGACG00000011870	xrn2	92	81.265	ENSETEG00000001740	XRN2	78	81.265	Echinops_telfairi
ENSGACG00000011870	xrn2	96	72.159	ENSEBUG00000016136	xrn2	100	66.950	Eptatretus_burgeri
ENSGACG00000011870	xrn2	100	75.000	ENSEASG00005002484	XRN2	87	75.000	Equus_asinus_asinus
ENSGACG00000011870	xrn2	100	75.000	ENSECAG00000018988	XRN2	88	73.443	Equus_caballus
ENSGACG00000011870	xrn2	76	88.000	ENSEEUG00000009265	XRN2	67	88.000	Erinaceus_europaeus
ENSGACG00000011870	xrn2	96	89.251	ENSELUG00000000552	xrn2	85	84.179	Esox_lucius
ENSGACG00000011870	xrn2	100	74.399	ENSFCAG00000007970	XRN2	87	74.399	Felis_catus
ENSGACG00000011870	xrn2	96	79.264	ENSFALG00000004508	XRN2	87	76.116	Ficedula_albicollis
ENSGACG00000011870	xrn2	100	75.000	ENSFDAG00000016311	XRN2	87	75.000	Fukomys_damarensis
ENSGACG00000011870	xrn2	97	79.127	ENSFHEG00000013039	xrn2	99	79.317	Fundulus_heteroclitus
ENSGACG00000011870	xrn2	99	85.750	ENSGMOG00000013436	xrn2	100	85.750	Gadus_morhua
ENSGACG00000011870	xrn2	96	79.651	ENSGALG00000008372	XRN2	87	75.060	Gallus_gallus
ENSGACG00000011870	xrn2	96	86.756	ENSGAFG00000014284	xrn2	92	85.645	Gambusia_affinis
ENSGACG00000011870	xrn2	96	78.378	ENSGAGG00000004884	XRN2	87	75.030	Gopherus_agassizii
ENSGACG00000011870	xrn2	100	74.399	ENSGGOG00000013738	XRN2	87	74.399	Gorilla_gorilla
ENSGACG00000011870	xrn2	96	84.526	ENSHBUG00000005077	xrn2	94	84.720	Haplochromis_burtoni
ENSGACG00000011870	xrn2	100	73.678	ENSHGLG00000014831	XRN2	87	73.918	Heterocephalus_glaber_female
ENSGACG00000011870	xrn2	100	73.678	ENSHGLG00100013130	XRN2	87	73.918	Heterocephalus_glaber_male
ENSGACG00000011870	xrn2	96	88.417	ENSHCOG00000011994	xrn2	91	80.676	Hippocampus_comes
ENSGACG00000011870	xrn2	96	87.140	ENSIPUG00000006639	xrn2	87	80.380	Ictalurus_punctatus
ENSGACG00000011870	xrn2	100	74.760	ENSSTOG00000000589	XRN2	87	74.760	Ictidomys_tridecemlineatus
ENSGACG00000011870	xrn2	100	75.120	ENSJJAG00000022128	Xrn2	87	75.120	Jaculus_jaculus
ENSGACG00000011870	xrn2	96	88.008	ENSLBEG00000010041	xrn2	100	88.201	Labrus_bergylta
ENSGACG00000011870	xrn2	97	74.321	ENSLACG00000008307	XRN2	98	74.321	Latimeria_chalumnae
ENSGACG00000011870	xrn2	96	84.660	ENSLOCG00000016874	xrn2	92	78.244	Lepisosteus_oculatus
ENSGACG00000011870	xrn2	100	74.760	ENSLAFG00000014624	XRN2	87	74.760	Loxodonta_africana
ENSGACG00000011870	xrn2	100	74.399	ENSMFAG00000038122	XRN2	87	74.399	Macaca_fascicularis
ENSGACG00000011870	xrn2	100	74.399	ENSMMUG00000011405	XRN2	87	74.399	Macaca_mulatta
ENSGACG00000011870	xrn2	100	74.279	ENSMNEG00000040626	XRN2	87	74.279	Macaca_nemestrina
ENSGACG00000011870	xrn2	100	74.279	ENSMLEG00000041897	XRN2	87	74.279	Mandrillus_leucophaeus
ENSGACG00000011870	xrn2	96	91.555	ENSMAMG00000008633	xrn2	87	86.925	Mastacembelus_armatus
ENSGACG00000011870	xrn2	96	87.645	ENSMZEG00005022362	xrn2	94	84.526	Maylandia_zebra
ENSGACG00000011870	xrn2	96	78.654	ENSMGAG00000003196	XRN2	87	74.580	Meleagris_gallopavo
ENSGACG00000011870	xrn2	100	75.181	ENSMAUG00000021842	Xrn2	87	75.181	Mesocricetus_auratus
ENSGACG00000011870	xrn2	100	74.639	ENSMICG00000008126	XRN2	87	74.639	Microcebus_murinus
ENSGACG00000011870	xrn2	100	74.760	ENSMOCG00000012588	Xrn2	87	75.000	Microtus_ochrogaster
ENSGACG00000011870	xrn2	96	88.676	ENSMMOG00000017576	xrn2	99	81.651	Mola_mola
ENSGACG00000011870	xrn2	100	75.390	ENSMODG00000006163	XRN2	88	75.390	Monodelphis_domestica
ENSGACG00000011870	xrn2	96	88.868	ENSMALG00000011355	xrn2	95	88.910	Monopterus_albus
ENSGACG00000011870	xrn2	96	78.571	MGP_CAROLIEiJ_G0024400	Xrn2	87	75.301	Mus_caroli
ENSGACG00000011870	xrn2	96	78.571	ENSMUSG00000027433	Xrn2	87	75.301	Mus_musculus
ENSGACG00000011870	xrn2	96	78.571	MGP_PahariEiJ_G0025843	Xrn2	87	75.181	Mus_pahari
ENSGACG00000011870	xrn2	96	78.571	MGP_SPRETEiJ_G0025318	Xrn2	94	79.787	Mus_spretus
ENSGACG00000011870	xrn2	96	78.185	ENSMPUG00000001198	XRN2	81	73.145	Mustela_putorius_furo
ENSGACG00000011870	xrn2	100	74.850	ENSMLUG00000001536	XRN2	87	74.850	Myotis_lucifugus
ENSGACG00000011870	xrn2	100	75.240	ENSNGAG00000018138	Xrn2	87	75.240	Nannospalax_galili
ENSGACG00000011870	xrn2	96	88.395	ENSNBRG00000008062	xrn2	94	85.271	Neolamprologus_brichardi
ENSGACG00000011870	xrn2	100	74.399	ENSNLEG00000009991	XRN2	87	74.399	Nomascus_leucogenys
ENSGACG00000011870	xrn2	61	84.444	ENSMEUG00000008622	-	53	84.444	Notamacropus_eugenii
ENSGACG00000011870	xrn2	69	72.105	ENSOPRG00000001397	-	63	72.105	Ochotona_princeps
ENSGACG00000011870	xrn2	98	68.987	ENSODEG00000000860	-	89	68.742	Octodon_degus
ENSGACG00000011870	xrn2	100	74.760	ENSODEG00000010745	-	87	74.760	Octodon_degus
ENSGACG00000011870	xrn2	100	84.940	ENSONIG00000018720	xrn2	86	84.699	Oreochromis_niloticus
ENSGACG00000011870	xrn2	96	78.764	ENSOANG00000015673	XRN2	87	75.211	Ornithorhynchus_anatinus
ENSGACG00000011870	xrn2	100	75.000	ENSOCUG00000013468	XRN2	87	75.000	Oryctolagus_cuniculus
ENSGACG00000011870	xrn2	96	88.676	ENSORLG00000017213	xrn2	94	83.472	Oryzias_latipes
ENSGACG00000011870	xrn2	96	88.676	ENSORLG00020001824	xrn2	87	83.829	Oryzias_latipes_hni
ENSGACG00000011870	xrn2	96	88.676	ENSORLG00015019747	xrn2	87	83.353	Oryzias_latipes_hsok
ENSGACG00000011870	xrn2	96	87.716	ENSOMEG00000019820	xrn2	86	82.045	Oryzias_melastigma
ENSGACG00000011870	xrn2	96	77.799	ENSOGAG00000001068	XRN2	87	74.609	Otolemur_garnettii
ENSGACG00000011870	xrn2	97	73.913	ENSOARG00000004443	XRN2	87	73.913	Ovis_aries
ENSGACG00000011870	xrn2	100	74.399	ENSPPAG00000033549	XRN2	87	74.399	Pan_paniscus
ENSGACG00000011870	xrn2	100	74.399	ENSPPRG00000008732	XRN2	87	74.399	Panthera_pardus
ENSGACG00000011870	xrn2	97	74.069	ENSPTIG00000015683	XRN2	85	74.069	Panthera_tigris_altaica
ENSGACG00000011870	xrn2	100	74.399	ENSPTRG00000013308	XRN2	87	74.399	Pan_troglodytes
ENSGACG00000011870	xrn2	100	74.399	ENSPANG00000018088	XRN2	87	74.399	Papio_anubis
ENSGACG00000011870	xrn2	96	86.346	ENSPKIG00000016889	xrn2	86	80.884	Paramormyrops_kingsleyae
ENSGACG00000011870	xrn2	92	74.968	ENSPSIG00000014666	XRN2	100	74.968	Pelodiscus_sinensis
ENSGACG00000011870	xrn2	100	75.120	ENSPEMG00000000111	Xrn2	87	75.120	Peromyscus_maniculatus_bairdii
ENSGACG00000011870	xrn2	60	74.474	ENSPMAG00000002576	xrn2	98	74.474	Petromyzon_marinus
ENSGACG00000011870	xrn2	96	86.756	ENSPFOG00000004182	xrn2	87	82.830	Poecilia_formosa
ENSGACG00000011870	xrn2	96	86.948	ENSPLAG00000007351	xrn2	94	81.840	Poecilia_latipinna
ENSGACG00000011870	xrn2	93	80.715	ENSPMEG00000011798	xrn2	86	80.843	Poecilia_mexicana
ENSGACG00000011870	xrn2	96	87.524	ENSPREG00000012452	xrn2	94	81.840	Poecilia_reticulata
ENSGACG00000011870	xrn2	100	74.159	ENSPPYG00000010755	XRN2	87	74.159	Pongo_abelii
ENSGACG00000011870	xrn2	96	78.571	ENSPCAG00000011191	XRN2	87	70.673	Procavia_capensis
ENSGACG00000011870	xrn2	100	67.788	ENSPCOG00000016468	XRN2	86	67.788	Propithecus_coquereli
ENSGACG00000011870	xrn2	91	65.884	ENSPVAG00000004596	XRN2	80	65.884	Pteropus_vampyrus
ENSGACG00000011870	xrn2	100	81.026	ENSPNYG00000001765	xrn2	94	81.431	Pundamilia_nyererei
ENSGACG00000011870	xrn2	96	85.029	ENSPNAG00000010956	xrn2	86	80.357	Pygocentrus_nattereri
ENSGACG00000011870	xrn2	100	75.361	ENSRNOG00000011785	Xrn2	87	75.361	Rattus_norvegicus
ENSGACG00000011870	xrn2	96	77.799	ENSRBIG00000036193	XRN2	100	74.787	Rhinopithecus_bieti
ENSGACG00000011870	xrn2	100	74.399	ENSRROG00000044400	XRN2	79	74.399	Rhinopithecus_roxellana
ENSGACG00000011870	xrn2	81	51.685	YOR048C	RAT1	63	53.753	Saccharomyces_cerevisiae
ENSGACG00000011870	xrn2	100	74.760	ENSSBOG00000021014	XRN2	87	74.760	Saimiri_boliviensis_boliviensis
ENSGACG00000011870	xrn2	96	87.115	ENSSFOG00015001091	xrn2	90	78.431	Scleropages_formosus
ENSGACG00000011870	xrn2	96	91.892	ENSSMAG00000007834	xrn2	85	85.561	Scophthalmus_maximus
ENSGACG00000011870	xrn2	96	89.675	ENSSDUG00000012802	xrn2	95	84.754	Seriola_dumerili
ENSGACG00000011870	xrn2	96	91.171	ENSSLDG00000021273	xrn2	94	87.046	Seriola_lalandi_dorsalis
ENSGACG00000011870	xrn2	63	88.000	ENSSARG00000005859	-	53	88.000	Sorex_araneus
ENSGACG00000011870	xrn2	96	80.577	ENSSPUG00000005485	XRN2	85	73.918	Sphenodon_punctatus
ENSGACG00000011870	xrn2	96	92.263	ENSSPAG00000016027	xrn2	86	85.680	Stegastes_partitus
ENSGACG00000011870	xrn2	96	77.992	ENSSSCG00000007109	XRN2	87	73.317	Sus_scrofa
ENSGACG00000011870	xrn2	99	74.430	ENSTGUG00000007535	XRN2	87	74.430	Taeniopygia_guttata
ENSGACG00000011870	xrn2	96	87.716	ENSTRUG00000015489	xrn2	85	84.504	Takifugu_rubripes
ENSGACG00000011870	xrn2	100	83.474	ENSTNIG00000010712	xrn2	87	83.595	Tetraodon_nigroviridis
ENSGACG00000011870	xrn2	100	73.197	ENSTBEG00000004119	XRN2	87	73.438	Tupaia_belangeri
ENSGACG00000011870	xrn2	96	77.606	ENSTTRG00000009087	XRN2	80	76.882	Tursiops_truncatus
ENSGACG00000011870	xrn2	100	74.819	ENSUAMG00000024634	XRN2	95	72.682	Ursus_americanus
ENSGACG00000011870	xrn2	97	74.442	ENSUMAG00000004012	XRN2	82	74.442	Ursus_maritimus
ENSGACG00000011870	xrn2	79	84.466	ENSVPAG00000010694	XRN2	69	84.466	Vicugna_pacos
ENSGACG00000011870	xrn2	100	74.760	ENSVVUG00000012178	XRN2	87	74.760	Vulpes_vulpes
ENSGACG00000011870	xrn2	96	78.998	ENSXETG00000023501	xrn2	88	76.098	Xenopus_tropicalis
ENSGACG00000011870	xrn2	96	86.948	ENSXMAG00000000242	xrn2	92	86.618	Xiphophorus_maculatus