EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000011893 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 4780 bases
Position: chrgroupXIII:13339590-13344369
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000015761	PRP21_like_P	PF12230.8	2.8e-49	1	1
ENSGACP00000015748	PRP21_like_P	PF12230.8	3.7e-49	1	1
ENSGACP00000015761	Surp	PF01805.20	3.7e-46	1	2
ENSGACP00000015761	Surp	PF01805.20	3.7e-46	2	2
ENSGACP00000015748	Surp	PF01805.20	6.2e-46	1	2
ENSGACP00000015748	Surp	PF01805.20	6.2e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000015792	-	1927	-	ENSGACP00000015761	623 (aa)	-	G3PDT7
ENSGACT00000015779	-	2602	-	ENSGACP00000015748	785 (aa)	-	G3PDS4

Gene Model

Click here to download ENSGACG00000011893's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000011893's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000011893	sf3a1	97	84.162	ENSG00000099995	SF3A1	100	82.620	Homo_sapiens
ENSGACG00000011893	sf3a1	100	90.909	ENSAPOG00000020465	sf3a1	100	91.414	Acanthochromis_polyacanthus
ENSGACG00000011893	sf3a1	97	83.246	ENSAMEG00000007737	SF3A1	100	81.910	Ailuropoda_melanoleuca
ENSGACG00000011893	sf3a1	100	90.152	ENSACIG00000020672	sf3a1	100	90.657	Amphilophus_citrinellus
ENSGACG00000011893	sf3a1	100	90.783	ENSAOCG00000003060	sf3a1	100	91.288	Amphiprion_ocellaris
ENSGACG00000011893	sf3a1	100	90.783	ENSAPEG00000010735	sf3a1	100	91.288	Amphiprion_percula
ENSGACG00000011893	sf3a1	97	90.104	ENSATEG00000021201	sf3a1	96	91.242	Anabas_testudineus
ENSGACG00000011893	sf3a1	96	82.540	ENSAPLG00000009057	SF3A1	99	83.203	Anas_platyrhynchos
ENSGACG00000011893	sf3a1	100	79.332	ENSACAG00000009415	SF3A1	100	80.074	Anolis_carolinensis
ENSGACG00000011893	sf3a1	97	83.377	ENSANAG00000032045	SF3A1	100	81.990	Aotus_nancymaae
ENSGACG00000011893	sf3a1	100	89.494	ENSACLG00000012622	sf3a1	100	90.000	Astatotilapia_calliptera
ENSGACG00000011893	sf3a1	99	85.461	ENSAMXG00000005382	sf3a1	99	86.473	Astyanax_mexicanus
ENSGACG00000011893	sf3a1	97	83.639	ENSBTAG00000003390	SF3A1	100	82.368	Bos_taurus
ENSGACG00000011893	sf3a1	82	45.367	WBGene00004188	prp-21	59	50.342	Caenorhabditis_elegans
ENSGACG00000011893	sf3a1	97	83.508	ENSCJAG00000010370	SF3A1	100	82.116	Callithrix_jacchus
ENSGACG00000011893	sf3a1	97	83.246	ENSCAFG00000012559	SF3A1	100	82.116	Canis_familiaris
ENSGACG00000011893	sf3a1	97	83.246	ENSCAFG00020000838	SF3A1	100	82.116	Canis_lupus_dingo
ENSGACG00000011893	sf3a1	97	83.770	ENSCHIG00000018642	SF3A1	100	82.494	Capra_hircus
ENSGACG00000011893	sf3a1	97	83.377	ENSTSYG00000004739	SF3A1	100	82.242	Carlito_syrichta
ENSGACG00000011893	sf3a1	94	67.790	ENSCAPG00000015414	SF3A1	97	67.790	Cavia_aperea
ENSGACG00000011893	sf3a1	97	84.031	ENSCPOG00000014589	SF3A1	100	82.116	Cavia_porcellus
ENSGACG00000011893	sf3a1	97	83.377	ENSCCAG00000032006	SF3A1	100	81.990	Cebus_capucinus
ENSGACG00000011893	sf3a1	97	83.639	ENSCATG00000029241	SF3A1	100	82.494	Cercocebus_atys
ENSGACG00000011893	sf3a1	97	83.053	ENSCLAG00000006508	SF3A1	100	82.331	Chinchilla_lanigera
ENSGACG00000011893	sf3a1	97	83.639	ENSCSAG00000009470	SF3A1	100	82.620	Chlorocebus_sabaeus
ENSGACG00000011893	sf3a1	57	87.405	ENSCHOG00000005201	SF3A1	60	89.313	Choloepus_hoffmanni
ENSGACG00000011893	sf3a1	100	80.633	ENSCPBG00000007595	SF3A1	100	81.139	Chrysemys_picta_bellii
ENSGACG00000011893	sf3a1	97	49.299	ENSCSAVG00000005608	-	92	67.254	Ciona_savignyi
ENSGACG00000011893	sf3a1	97	83.639	ENSCANG00000033564	SF3A1	100	82.620	Colobus_angolensis_palliatus
ENSGACG00000011893	sf3a1	96	83.794	ENSCGRG00001008933	Sf3a1	100	82.242	Cricetulus_griseus_chok1gshd
ENSGACG00000011893	sf3a1	96	83.794	ENSCGRG00000006127	Sf3a1	100	82.242	Cricetulus_griseus_crigri
ENSGACG00000011893	sf3a1	100	87.626	ENSCSEG00000010792	sf3a1	100	88.131	Cynoglossus_semilaevis
ENSGACG00000011893	sf3a1	100	88.481	ENSCVAG00000004560	sf3a1	100	88.354	Cyprinodon_variegatus
ENSGACG00000011893	sf3a1	100	85.805	ENSDARG00000041887	sf3a1	100	87.719	Danio_rerio
ENSGACG00000011893	sf3a1	97	83.420	ENSDNOG00000010629	SF3A1	100	82.161	Dasypus_novemcinctus
ENSGACG00000011893	sf3a1	97	83.901	ENSDORG00000005613	Sf3a1	100	82.242	Dipodomys_ordii
ENSGACG00000011893	sf3a1	79	60.526	FBgn0266917	Sf3a1	68	59.594	Drosophila_melanogaster
ENSGACG00000011893	sf3a1	84	82.733	ENSETEG00000017194	SF3A1	95	82.883	Echinops_telfairi
ENSGACG00000011893	sf3a1	96	66.750	ENSEBUG00000001285	sf3a1	95	67.915	Eptatretus_burgeri
ENSGACG00000011893	sf3a1	97	83.508	ENSEASG00005010254	SF3A1	100	82.080	Equus_asinus_asinus
ENSGACG00000011893	sf3a1	97	83.508	ENSECAG00000023962	SF3A1	100	82.080	Equus_caballus
ENSGACG00000011893	sf3a1	73	90.164	ENSEEUG00000003159	SF3A1	82	90.164	Erinaceus_europaeus
ENSGACG00000011893	sf3a1	100	84.654	ENSELUG00000022578	sf3a1	100	83.899	Esox_lucius
ENSGACG00000011893	sf3a1	97	83.377	ENSFCAG00000011932	SF3A1	100	82.242	Felis_catus
ENSGACG00000011893	sf3a1	96	81.589	ENSFALG00000006944	SF3A1	100	81.163	Ficedula_albicollis
ENSGACG00000011893	sf3a1	97	83.639	ENSFDAG00000009560	SF3A1	100	82.494	Fukomys_damarensis
ENSGACG00000011893	sf3a1	100	88.005	ENSFHEG00000010866	sf3a1	100	88.510	Fundulus_heteroclitus
ENSGACG00000011893	sf3a1	100	86.531	ENSGMOG00000016024	sf3a1	100	86.658	Gadus_morhua
ENSGACG00000011893	sf3a1	96	82.781	ENSGALG00000007937	SF3A1	100	81.669	Gallus_gallus
ENSGACG00000011893	sf3a1	100	88.481	ENSGAFG00000009111	sf3a1	100	88.987	Gambusia_affinis
ENSGACG00000011893	sf3a1	96	80.053	ENSGAGG00000000762	SF3A1	99	80.581	Gopherus_agassizii
ENSGACG00000011893	sf3a1	97	84.162	ENSGGOG00000012631	SF3A1	100	82.620	Gorilla_gorilla
ENSGACG00000011893	sf3a1	100	90.000	ENSHBUG00000015795	sf3a1	100	90.000	Haplochromis_burtoni
ENSGACG00000011893	sf3a1	97	83.508	ENSHGLG00000007907	SF3A1	100	82.116	Heterocephalus_glaber_female
ENSGACG00000011893	sf3a1	97	83.508	ENSHGLG00100013799	SF3A1	100	82.116	Heterocephalus_glaber_male
ENSGACG00000011893	sf3a1	100	87.072	ENSHCOG00000015423	sf3a1	100	87.072	Hippocampus_comes
ENSGACG00000011893	sf3a1	97	84.746	ENSIPUG00000002470	sf3a1	98	85.509	Ictalurus_punctatus
ENSGACG00000011893	sf3a1	97	83.355	ENSSTOG00000013892	SF3A1	100	82.494	Ictidomys_tridecemlineatus
ENSGACG00000011893	sf3a1	97	83.508	ENSJJAG00000022566	Sf3a1	100	82.138	Jaculus_jaculus
ENSGACG00000011893	sf3a1	100	88.005	ENSKMAG00000002400	sf3a1	100	89.394	Kryptolebias_marmoratus
ENSGACG00000011893	sf3a1	100	91.635	ENSLBEG00000022974	sf3a1	100	91.635	Labrus_bergylta
ENSGACG00000011893	sf3a1	100	81.486	ENSLACG00000003565	SF3A1	100	81.439	Latimeria_chalumnae
ENSGACG00000011893	sf3a1	100	84.403	ENSLOCG00000008251	sf3a1	99	84.887	Lepisosteus_oculatus
ENSGACG00000011893	sf3a1	97	83.377	ENSLAFG00000000448	SF3A1	100	82.242	Loxodonta_africana
ENSGACG00000011893	sf3a1	96	55.253	ENSLAFG00000026032	-	97	55.052	Loxodonta_africana
ENSGACG00000011893	sf3a1	97	83.770	ENSMFAG00000031979	SF3A1	100	82.746	Macaca_fascicularis
ENSGACG00000011893	sf3a1	97	83.770	ENSMMUG00000005547	SF3A1	100	82.746	Macaca_mulatta
ENSGACG00000011893	sf3a1	97	83.901	ENSMNEG00000037229	SF3A1	100	82.872	Macaca_nemestrina
ENSGACG00000011893	sf3a1	97	83.639	ENSMLEG00000041908	SF3A1	100	82.620	Mandrillus_leucophaeus
ENSGACG00000011893	sf3a1	98	89.089	ENSMAMG00000006460	sf3a1	97	89.859	Mastacembelus_armatus
ENSGACG00000011893	sf3a1	100	89.494	ENSMZEG00005009633	sf3a1	100	90.000	Maylandia_zebra
ENSGACG00000011893	sf3a1	96	82.781	ENSMGAG00000001330	SF3A1	99	83.181	Meleagris_gallopavo
ENSGACG00000011893	sf3a1	93	79.400	ENSMAUG00000020317	Sf3a1	100	76.263	Mesocricetus_auratus
ENSGACG00000011893	sf3a1	97	83.377	ENSMICG00000010038	SF3A1	100	81.486	Microcebus_murinus
ENSGACG00000011893	sf3a1	97	83.377	ENSMOCG00000008438	Sf3a1	100	82.116	Microtus_ochrogaster
ENSGACG00000011893	sf3a1	100	88.071	ENSMMOG00000015588	sf3a1	99	88.071	Mola_mola
ENSGACG00000011893	sf3a1	97	82.727	ENSMODG00000009270	SF3A1	100	82.197	Monodelphis_domestica
ENSGACG00000011893	sf3a1	100	89.254	ENSMALG00000000148	sf3a1	100	89.886	Monopterus_albus
ENSGACG00000011893	sf3a1	97	83.355	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.554	Mus_caroli
ENSGACG00000011893	sf3a1	97	83.355	ENSMUSG00000002129	Sf3a1	99	82.554	Mus_musculus
ENSGACG00000011893	sf3a1	97	83.225	MGP_PahariEiJ_G0016862	Sf3a1	99	82.427	Mus_pahari
ENSGACG00000011893	sf3a1	97	83.355	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.554	Mus_spretus
ENSGACG00000011893	sf3a1	97	83.246	ENSMPUG00000013144	SF3A1	100	82.242	Mustela_putorius_furo
ENSGACG00000011893	sf3a1	97	83.508	ENSMLUG00000002139	SF3A1	100	82.116	Myotis_lucifugus
ENSGACG00000011893	sf3a1	97	83.901	ENSNGAG00000016977	Sf3a1	100	82.116	Nannospalax_galili
ENSGACG00000011893	sf3a1	100	89.747	ENSNBRG00000016642	sf3a1	100	89.646	Neolamprologus_brichardi
ENSGACG00000011893	sf3a1	97	83.639	ENSNLEG00000003686	SF3A1	100	82.620	Nomascus_leucogenys
ENSGACG00000011893	sf3a1	93	74.932	ENSMEUG00000008741	SF3A1	100	73.913	Notamacropus_eugenii
ENSGACG00000011893	sf3a1	97	83.901	ENSOPRG00000016636	SF3A1	100	82.478	Ochotona_princeps
ENSGACG00000011893	sf3a1	97	83.203	ENSODEG00000002571	SF3A1	100	82.346	Octodon_degus
ENSGACG00000011893	sf3a1	100	90.518	ENSONIG00000010848	sf3a1	100	90.518	Oreochromis_niloticus
ENSGACG00000011893	sf3a1	97	83.246	ENSOCUG00000007633	SF3A1	100	81.864	Oryctolagus_cuniculus
ENSGACG00000011893	sf3a1	96	88.259	ENSORLG00000013050	sf3a1	99	89.182	Oryzias_latipes
ENSGACG00000011893	sf3a1	99	86.387	ENSORLG00020003236	sf3a1	97	87.179	Oryzias_latipes_hni
ENSGACG00000011893	sf3a1	100	87.863	ENSORLG00015017411	sf3a1	100	88.748	Oryzias_latipes_hsok
ENSGACG00000011893	sf3a1	100	89.367	ENSOMEG00000013362	sf3a1	100	89.367	Oryzias_melastigma
ENSGACG00000011893	sf3a1	97	83.639	ENSOGAG00000012931	SF3A1	100	82.494	Otolemur_garnettii
ENSGACG00000011893	sf3a1	97	82.330	ENSOARG00000006849	SF3A1	100	80.982	Ovis_aries
ENSGACG00000011893	sf3a1	97	83.246	ENSPPAG00000041790	SF3A1	100	80.673	Pan_paniscus
ENSGACG00000011893	sf3a1	97	83.377	ENSPPRG00000004391	SF3A1	100	82.242	Panthera_pardus
ENSGACG00000011893	sf3a1	97	83.246	ENSPTIG00000000844	SF3A1	99	83.901	Panthera_tigris_altaica
ENSGACG00000011893	sf3a1	97	84.162	ENSPTRG00000014240	SF3A1	100	82.620	Pan_troglodytes
ENSGACG00000011893	sf3a1	97	83.639	ENSPANG00000020772	SF3A1	100	82.620	Papio_anubis
ENSGACG00000011893	sf3a1	92	80.450	ENSPSIG00000012803	SF3A1	99	92.308	Pelodiscus_sinensis
ENSGACG00000011893	sf3a1	97	87.484	ENSPMGG00000023096	sf3a1	100	88.801	Periophthalmus_magnuspinnatus
ENSGACG00000011893	sf3a1	96	83.663	ENSPEMG00000009494	Sf3a1	100	82.116	Peromyscus_maniculatus_bairdii
ENSGACG00000011893	sf3a1	86	77.532	ENSPMAG00000007139	-	100	72.697	Petromyzon_marinus
ENSGACG00000011893	sf3a1	97	82.660	ENSPCIG00000022692	SF3A1	100	81.944	Phascolarctos_cinereus
ENSGACG00000011893	sf3a1	100	79.188	ENSPFOG00000016768	sf3a1	100	79.061	Poecilia_formosa
ENSGACG00000011893	sf3a1	100	88.510	ENSPLAG00000017268	sf3a1	100	88.889	Poecilia_latipinna
ENSGACG00000011893	sf3a1	96	89.242	ENSPMEG00000019811	sf3a1	100	87.946	Poecilia_mexicana
ENSGACG00000011893	sf3a1	100	88.258	ENSPREG00000010347	sf3a1	100	88.763	Poecilia_reticulata
ENSGACG00000011893	sf3a1	97	83.639	ENSPPYG00000011707	SF3A1	100	82.620	Pongo_abelii
ENSGACG00000011893	sf3a1	58	83.471	ENSPCAG00000003266	SF3A1	57	83.471	Procavia_capensis
ENSGACG00000011893	sf3a1	97	83.377	ENSPCOG00000026630	SF3A1	100	81.486	Propithecus_coquereli
ENSGACG00000011893	sf3a1	94	82.842	ENSPVAG00000017719	SF3A1	94	83.512	Pteropus_vampyrus
ENSGACG00000011893	sf3a1	100	89.873	ENSPNYG00000018706	sf3a1	100	89.873	Pundamilia_nyererei
ENSGACG00000011893	sf3a1	99	84.567	ENSPNAG00000003721	sf3a1	99	85.714	Pygocentrus_nattereri
ENSGACG00000011893	sf3a1	97	82.902	ENSRNOG00000005218	Sf3a1	99	82.427	Rattus_norvegicus
ENSGACG00000011893	sf3a1	97	83.639	ENSRBIG00000032167	SF3A1	100	82.620	Rhinopithecus_bieti
ENSGACG00000011893	sf3a1	97	83.639	ENSRROG00000044908	SF3A1	100	82.620	Rhinopithecus_roxellana
ENSGACG00000011893	sf3a1	93	83.243	ENSSBOG00000021960	SF3A1	99	83.556	Saimiri_boliviensis_boliviensis
ENSGACG00000011893	sf3a1	97	79.922	ENSSHAG00000003666	SF3A1	97	81.226	Sarcophilus_harrisii
ENSGACG00000011893	sf3a1	100	84.528	ENSSFOG00015004579	sf3a1	100	85.409	Scleropages_formosus
ENSGACG00000011893	sf3a1	100	88.340	ENSSMAG00000004275	sf3a1	100	88.593	Scophthalmus_maximus
ENSGACG00000011893	sf3a1	100	91.150	ENSSDUG00000022219	sf3a1	100	91.150	Seriola_dumerili
ENSGACG00000011893	sf3a1	100	91.150	ENSSLDG00000012642	sf3a1	100	91.150	Seriola_lalandi_dorsalis
ENSGACG00000011893	sf3a1	97	81.021	ENSSARG00000005960	SF3A1	99	81.152	Sorex_araneus
ENSGACG00000011893	sf3a1	96	82.138	ENSSPUG00000018863	SF3A1	100	81.750	Sphenodon_punctatus
ENSGACG00000011893	sf3a1	100	92.162	ENSSPAG00000011856	sf3a1	100	92.162	Stegastes_partitus
ENSGACG00000011893	sf3a1	97	83.508	ENSSSCG00000010002	SF3A1	100	82.494	Sus_scrofa
ENSGACG00000011893	sf3a1	96	82.431	ENSTGUG00000010547	SF3A1	99	83.095	Taeniopygia_guttata
ENSGACG00000011893	sf3a1	100	88.340	ENSTRUG00000006118	sf3a1	100	87.579	Takifugu_rubripes
ENSGACG00000011893	sf3a1	64	86.567	ENSTNIG00000005713	sf3a1	88	93.578	Tetraodon_nigroviridis
ENSGACG00000011893	sf3a1	97	76.402	ENSTBEG00000012771	SF3A1	100	75.693	Tupaia_belangeri
ENSGACG00000011893	sf3a1	97	83.137	ENSTTRG00000001535	SF3A1	100	81.887	Tursiops_truncatus
ENSGACG00000011893	sf3a1	99	80.584	ENSUAMG00000006750	SF3A1	99	81.218	Ursus_americanus
ENSGACG00000011893	sf3a1	97	83.246	ENSUMAG00000016665	SF3A1	98	83.684	Ursus_maritimus
ENSGACG00000011893	sf3a1	97	83.246	ENSVVUG00000003075	SF3A1	100	82.116	Vulpes_vulpes
ENSGACG00000011893	sf3a1	100	77.792	ENSXETG00000016144	sf3a1	96	82.661	Xenopus_tropicalis
ENSGACG00000011893	sf3a1	100	88.354	ENSXCOG00000015653	sf3a1	100	88.734	Xiphophorus_couchianus
ENSGACG00000011893	sf3a1	100	88.608	ENSXMAG00000002753	sf3a1	100	88.987	Xiphophorus_maculatus