EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000011925 (Gene tree)
Gene ID: -
Gene Symbol: rab13
Alias: cb764|hm:zeh0455
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 5090 bases
Position: chrgroupXX:12914998-12920087
Accession: ZDB-GENE-030826-30
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000015783	MMR_HSR1	PF01926.23	8.2e-05	1	1
ENSGACP00000015778	MMR_HSR1	PF01926.23	9.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000015814	-	609	-	ENSGACP00000015783	202 (aa)	-	G3PDV9
ENSGACT00000015809	-	978	-	ENSGACP00000015778	202 (aa)	-	G3PDV4

Gene Model

Click here to download ENSGACG00000011925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000011925's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000011925	rab13	79	44.654	ENSGACG00000020356	rab6a	76	44.654
ENSGACG00000011925	rab13	77	40.625	ENSGACG00000014578	RAB9A	80	40.625
ENSGACG00000011925	rab13	89	53.073	ENSGACG00000007722	rab15	99	53.073
ENSGACG00000011925	rab13	88	45.109	ENSGACG00000001694	rab18a	86	45.109
ENSGACG00000011925	rab13	95	38.462	ENSGACG00000019540	rab33ba	81	39.560
ENSGACG00000011925	rab13	56	31.034	ENSGACG00000003710	arl4d	59	31.034
ENSGACG00000011925	rab13	94	41.667	ENSGACG00000013249	rab25b	91	41.667
ENSGACG00000011925	rab13	57	30.769	ENSGACG00000003070	arl3	60	30.769
ENSGACG00000011925	rab13	85	43.931	ENSGACG00000016164	rab4a	79	43.931
ENSGACG00000011925	rab13	89	45.000	ENSGACG00000016395	rab18b	87	45.000
ENSGACG00000011925	rab13	86	36.994	ENSGACG00000006151	rab23	77	36.957
ENSGACG00000011925	rab13	95	34.021	ENSGACG00000004844	rras	96	34.021
ENSGACG00000011925	rab13	85	45.977	ENSGACG00000001950	RAB39B	81	45.977
ENSGACG00000011925	rab13	76	30.380	ENSGACG00000015457	dnajc27	73	30.380
ENSGACG00000011925	rab13	80	47.205	ENSGACG00000013611	-	81	46.061
ENSGACG00000011925	rab13	94	36.098	ENSGACG00000020514	rab34b	78	36.098
ENSGACG00000011925	rab13	97	52.821	ENSGACG00000013401	zgc:171927	100	51.010
ENSGACG00000011925	rab13	81	38.728	ENSGACG00000018291	rab9b	83	38.728
ENSGACG00000011925	rab13	98	47.030	ENSGACG00000013548	rab35b	100	47.030
ENSGACG00000011925	rab13	94	38.542	ENSGACG00000004997	rab5aa	89	38.542
ENSGACG00000011925	rab13	80	44.099	ENSGACG00000013721	rab6bb	77	44.099
ENSGACG00000011925	rab13	85	43.275	ENSGACG00000016799	-	99	43.275
ENSGACG00000011925	rab13	83	45.833	ENSGACG00000014905	rab2a	79	45.833
ENSGACG00000011925	rab13	97	38.000	ENSGACG00000004965	rab25a	97	38.000
ENSGACG00000011925	rab13	87	36.313	ENSGACG00000009647	RAB7A	86	36.313
ENSGACG00000011925	rab13	83	40.476	ENSGACG00000008659	rab5c	83	39.344
ENSGACG00000011925	rab13	93	32.857	ENSGACG00000018711	rasl11a	70	34.091
ENSGACG00000011925	rab13	86	45.665	ENSGACG00000015479	rab11bb	79	45.665
ENSGACG00000011925	rab13	89	41.081	ENSGACG00000001725	zgc:101559	70	42.073
ENSGACG00000011925	rab13	79	40.994	ENSGACG00000005397	si:ch211-247i17.1	92	40.994
ENSGACG00000011925	rab13	86	47.399	ENSGACG00000013259	rab11al	80	47.399
ENSGACG00000011925	rab13	93	36.765	ENSGACG00000011190	rab34a	77	36.765
ENSGACG00000011925	rab13	93	43.367	ENSGACG00000018745	rab33a	84	43.367
ENSGACG00000011925	rab13	88	44.134	ENSGACG00000020437	-	88	44.134
ENSGACG00000011925	rab13	88	51.124	ENSGACG00000016639	rab12	81	51.124
ENSGACG00000011925	rab13	82	30.952	ENSGACG00000012474	rabl2	74	30.952
ENSGACG00000011925	rab13	89	37.363	ENSGACG00000014678	rab36	69	37.363
ENSGACG00000011925	rab13	87	52.000	ENSGACG00000005979	RAB15	85	52.000
ENSGACG00000011925	rab13	87	36.313	ENSGACG00000000807	-	88	36.313
ENSGACG00000011925	rab13	76	35.065	ENSGACG00000000729	rhebl1	83	35.065
ENSGACG00000011925	rab13	85	42.442	ENSGACG00000017153	rab41	75	44.025
ENSGACG00000011925	rab13	76	36.364	ENSGACG00000016680	rheb	83	36.364
ENSGACG00000011925	rab13	97	47.000	ENSGACG00000018847	-	83	49.206
ENSGACG00000011925	rab13	93	44.681	ENSGACG00000014915	si:dkey-16l2.16	86	46.196
ENSGACG00000011925	rab13	84	40.000	ENSGACG00000019767	-	86	40.000
ENSGACG00000011925	rab13	77	38.750	ENSGACG00000003972	rab9a	78	38.750
ENSGACG00000011925	rab13	91	56.284	ENSGACG00000019642	-	99	50.495
ENSGACG00000011925	rab13	95	34.375	ENSGACG00000011340	hrasb	98	34.375
ENSGACG00000011925	rab13	94	35.714	ENSGACG00000011607	rab32b	82	36.559
ENSGACG00000011925	rab13	95	32.995	ENSGACG00000015645	rras2	94	32.995
ENSGACG00000011925	rab13	91	46.448	ENSGACG00000012006	rab30	87	47.977
ENSGACG00000011925	rab13	83	35.882	ENSGACG00000007818	si:ch73-116o1.2	85	35.882
ENSGACG00000011925	rab13	97	53.000	ENSGACG00000003864	rab1ab	98	53.000
ENSGACG00000011925	rab13	96	38.191	ENSGACG00000006162	-	88	38.776
ENSGACG00000011925	rab13	97	51.759	ENSGACG00000000789	rab1ba	97	51.759
ENSGACG00000011925	rab13	88	36.612	ENSGACG00000011661	kras	93	34.518
ENSGACG00000011925	rab13	93	38.860	ENSGACG00000005608	rab22a	96	38.860
ENSGACG00000011925	rab13	97	31.156	ENSGACG00000019134	si:cabz01085950.1	95	31.156
ENSGACG00000011925	rab13	88	45.506	ENSGACG00000013297	-	81	45.506
ENSGACG00000011925	rab13	98	34.300	ENSGACG00000010473	RAB29	89	36.022
ENSGACG00000011925	rab13	83	40.556	ENSGACG00000003726	rab6ba	84	40.556
ENSGACG00000011925	rab13	90	30.556	ENSGACG00000003527	rab20	85	30.882

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000011925	rab13	99	75.248	ENSG00000143545	RAB13	99	75.248	Homo_sapiens
ENSGACG00000011925	rab13	100	84.729	ENSACIG00000008584	rab13	88	92.308	Amphilophus_citrinellus
ENSGACG00000011925	rab13	99	75.980	ENSANAG00000030247	-	99	75.980	Aotus_nancymaae
ENSGACG00000011925	rab13	99	92.574	ENSAMXG00000030712	rab13	100	92.574	Astyanax_mexicanus
ENSGACG00000011925	rab13	96	78.866	ENSBTAG00000017604	RAB13	96	78.866	Bos_taurus
ENSGACG00000011925	rab13	83	44.970	WBGene00019317	K02E10.1	78	44.970	Caenorhabditis_elegans
ENSGACG00000011925	rab13	94	78.836	ENSCJAG00000009933	-	99	76.238	Callithrix_jacchus
ENSGACG00000011925	rab13	96	78.351	ENSCHIG00000022271	-	96	78.351	Capra_hircus
ENSGACG00000011925	rab13	99	75.248	ENSCPOG00000011491	-	99	75.248	Cavia_porcellus
ENSGACG00000011925	rab13	99	75.248	ENSCCAG00000028502	-	99	75.248	Cebus_capucinus
ENSGACG00000011925	rab13	99	75.248	ENSCATG00000041779	-	99	75.248	Cercocebus_atys
ENSGACG00000011925	rab13	99	74.752	ENSCLAG00000006603	-	99	74.752	Chinchilla_lanigera
ENSGACG00000011925	rab13	99	75.248	ENSCANG00000036573	-	99	75.248	Colobus_angolensis_palliatus
ENSGACG00000011925	rab13	99	75.490	ENSCGRG00001021505	Rab13	99	75.490	Cricetulus_griseus_chok1gshd
ENSGACG00000011925	rab13	99	75.490	ENSCGRG00000012126	Rab13	99	75.490	Cricetulus_griseus_crigri
ENSGACG00000011925	rab13	99	93.500	ENSCSEG00000002358	rab13	100	93.500	Cynoglossus_semilaevis
ENSGACG00000011925	rab13	99	92.000	ENSDARG00000034771	rab13	100	92.000	Danio_rerio
ENSGACG00000011925	rab13	99	76.699	ENSDORG00000001591	Rab13	99	76.699	Dipodomys_ordii
ENSGACG00000011925	rab13	96	78.351	ENSEASG00005000683	-	96	78.351	Equus_asinus_asinus
ENSGACG00000011925	rab13	96	78.351	ENSECAG00000016551	RAB13	96	78.351	Equus_caballus
ENSGACG00000011925	rab13	99	73.399	ENSEEUG00000001233	-	100	73.399	Erinaceus_europaeus
ENSGACG00000011925	rab13	99	90.500	ENSELUG00000012801	rab13	100	90.500	Esox_lucius
ENSGACG00000011925	rab13	99	74.752	ENSFCAG00000045269	-	99	74.752	Felis_catus
ENSGACG00000011925	rab13	65	87.879	ENSFDAG00000014469	-	100	87.879	Fukomys_damarensis
ENSGACG00000011925	rab13	99	89.500	ENSFHEG00000021221	rab13	97	93.220	Fundulus_heteroclitus
ENSGACG00000011925	rab13	90	83.060	ENSGAGG00000000742	-	100	78.713	Gopherus_agassizii
ENSGACG00000011925	rab13	99	75.248	ENSGGOG00000023693	RAB13	99	75.248	Gorilla_gorilla
ENSGACG00000011925	rab13	99	75.124	ENSHGLG00000008749	RAB13	99	75.124	Heterocephalus_glaber_female
ENSGACG00000011925	rab13	99	75.124	ENSHGLG00100013608	RAB13	99	75.124	Heterocephalus_glaber_male
ENSGACG00000011925	rab13	99	88.500	ENSHCOG00000007440	rab13	97	95.480	Hippocampus_comes
ENSGACG00000011925	rab13	99	89.552	ENSIPUG00000003199	rab13	100	89.552	Ictalurus_punctatus
ENSGACG00000011925	rab13	96	78.866	ENSSTOG00000011222	-	96	78.866	Ictidomys_tridecemlineatus
ENSGACG00000011925	rab13	99	76.733	ENSJJAG00000010575	Rab13	99	76.733	Jaculus_jaculus
ENSGACG00000011925	rab13	99	89.500	ENSKMAG00000001908	rab13	100	89.500	Kryptolebias_marmoratus
ENSGACG00000011925	rab13	99	94.500	ENSLBEG00000026779	rab13	100	94.500	Labrus_bergylta
ENSGACG00000011925	rab13	88	75.706	ENSLACG00000008103	-	99	75.706	Latimeria_chalumnae
ENSGACG00000011925	rab13	99	75.248	ENSMFAG00000041018	RAB13	99	75.248	Macaca_fascicularis
ENSGACG00000011925	rab13	99	75.248	ENSMNEG00000028951	-	99	75.248	Macaca_nemestrina
ENSGACG00000011925	rab13	99	75.248	ENSMLEG00000042247	-	99	75.248	Mandrillus_leucophaeus
ENSGACG00000011925	rab13	99	95.000	ENSMAMG00000014602	rab13	100	95.000	Mastacembelus_armatus
ENSGACG00000011925	rab13	99	74.752	ENSMAUG00000015713	Rab13	99	74.752	Mesocricetus_auratus
ENSGACG00000011925	rab13	99	76.119	ENSMICG00000010340	-	99	76.119	Microcebus_murinus
ENSGACG00000011925	rab13	99	76.238	ENSMOCG00000021448	Rab13	99	76.238	Microtus_ochrogaster
ENSGACG00000011925	rab13	99	76.098	ENSMODG00000017295	-	84	76.098	Monodelphis_domestica
ENSGACG00000011925	rab13	95	78.534	MGP_CAROLIEiJ_G0025227	Rab13	99	74.510	Mus_caroli
ENSGACG00000011925	rab13	99	75.124	ENSMUSG00000027935	Rab13	99	74.757	Mus_musculus
ENSGACG00000011925	rab13	99	76.355	MGP_PahariEiJ_G0026671	Rab13	99	75.622	Mus_pahari
ENSGACG00000011925	rab13	99	77.114	ENSNGAG00000010309	Rab13	99	77.114	Nannospalax_galili
ENSGACG00000011925	rab13	99	94.500	ENSNBRG00000004124	rab13	100	94.500	Neolamprologus_brichardi
ENSGACG00000011925	rab13	99	75.248	ENSNLEG00000028944	-	94	80.541	Nomascus_leucogenys
ENSGACG00000011925	rab13	99	78.713	ENSMEUG00000009667	-	99	78.713	Notamacropus_eugenii
ENSGACG00000011925	rab13	99	75.248	ENSODEG00000010443	-	99	75.248	Octodon_degus
ENSGACG00000011925	rab13	63	88.976	ENSODEG00000012634	-	100	88.976	Octodon_degus
ENSGACG00000011925	rab13	99	89.604	ENSONIG00000006340	rab13	100	89.604	Oreochromis_niloticus
ENSGACG00000011925	rab13	86	83.815	ENSOCUG00000006286	-	97	83.815	Oryctolagus_cuniculus
ENSGACG00000011925	rab13	99	94.500	ENSOMEG00000008210	rab13	100	94.500	Oryzias_melastigma
ENSGACG00000011925	rab13	99	75.000	ENSOGAG00000016969	-	99	75.000	Otolemur_garnettii
ENSGACG00000011925	rab13	99	75.248	ENSPPAG00000028435	-	99	75.248	Pan_paniscus
ENSGACG00000011925	rab13	99	74.752	ENSPPRG00000008865	-	99	74.752	Panthera_pardus
ENSGACG00000011925	rab13	99	75.248	ENSPTRG00000001370	RAB13	99	75.248	Pan_troglodytes
ENSGACG00000011925	rab13	99	75.248	ENSPANG00000004479	-	99	75.248	Papio_anubis
ENSGACG00000011925	rab13	99	94.000	ENSPMGG00000007680	rab13	100	94.000	Periophthalmus_magnuspinnatus
ENSGACG00000011925	rab13	53	90.741	ENSPEMG00000017353	-	86	86.087	Peromyscus_maniculatus_bairdii
ENSGACG00000011925	rab13	99	78.713	ENSPCIG00000029350	-	99	78.713	Phascolarctos_cinereus
ENSGACG00000011925	rab13	88	93.785	ENSPLAG00000005832	RAB13	95	93.785	Poecilia_latipinna
ENSGACG00000011925	rab13	99	91.500	ENSPREG00000017567	rab13	100	91.500	Poecilia_reticulata
ENSGACG00000011925	rab13	99	75.248	ENSPPYG00000000790	-	99	75.248	Pongo_abelii
ENSGACG00000011925	rab13	99	76.617	ENSPCOG00000012189	-	99	76.617	Propithecus_coquereli
ENSGACG00000011925	rab13	99	76.617	ENSPVAG00000011095	-	99	76.617	Pteropus_vampyrus
ENSGACG00000011925	rab13	88	94.915	ENSPNAG00000004189	rab13	94	94.915	Pygocentrus_nattereri
ENSGACG00000011925	rab13	99	75.490	ENSRNOG00000016733	Rab13	99	75.490	Rattus_norvegicus
ENSGACG00000011925	rab13	99	76.238	ENSRBIG00000008552	-	99	76.238	Rhinopithecus_bieti
ENSGACG00000011925	rab13	99	76.238	ENSRROG00000036885	-	99	76.238	Rhinopithecus_roxellana
ENSGACG00000011925	rab13	99	76.119	ENSSBOG00000020342	-	99	76.119	Saimiri_boliviensis_boliviensis
ENSGACG00000011925	rab13	99	79.703	ENSSHAG00000011866	-	99	79.703	Sarcophilus_harrisii
ENSGACG00000011925	rab13	96	78.462	ENSSSCG00000006564	-	99	74.757	Sus_scrofa
ENSGACG00000011925	rab13	99	96.500	ENSTRUG00000024177	rab13	100	96.500	Takifugu_rubripes
ENSGACG00000011925	rab13	99	76.733	ENSTBEG00000012734	-	99	76.733	Tupaia_belangeri
ENSGACG00000011925	rab13	96	77.835	ENSTTRG00000011183	-	96	77.835	Tursiops_truncatus
ENSGACG00000011925	rab13	70	77.622	ENSXETG00000020729	rab13	100	72.500	Xenopus_tropicalis
ENSGACG00000011925	rab13	88	92.655	ENSXCOG00000019533	rab13	95	92.655	Xiphophorus_couchianus