EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000012320 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat containing 6C1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 22555 bases
Position: chrgroupXI:11499498-11522052
Accession: ZDB-GENE-030131-7440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000016290	RRM_1	PF00076.22	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000016322	-	5451	-	ENSGACP00000016290	1816 (aa)	-	G3PFB6

Gene Model

Click here to download ENSGACG00000012320's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000012320's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000012320	tnrc6c1	97	51.628	ENSGACG00000019401	tnrc6c2	99	51.099

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000012320	tnrc6c1	97	48.156	ENSG00000078687	TNRC6C	97	51.786	Homo_sapiens
ENSGACG00000012320	tnrc6c1	98	75.936	ENSAPOG00000019749	tnrc6c1	99	78.380	Acanthochromis_polyacanthus
ENSGACG00000012320	tnrc6c1	92	46.969	ENSAMEG00000013756	TNRC6C	77	51.480	Ailuropoda_melanoleuca
ENSGACG00000012320	tnrc6c1	92	71.101	ENSACIG00000008075	tnrc6c1	99	70.487	Amphilophus_citrinellus
ENSGACG00000012320	tnrc6c1	92	76.481	ENSAOCG00000023968	tnrc6c1	99	78.506	Amphiprion_ocellaris
ENSGACG00000012320	tnrc6c1	92	76.424	ENSAPEG00000009020	tnrc6c1	99	78.449	Amphiprion_percula
ENSGACG00000012320	tnrc6c1	97	47.813	ENSAPLG00000005456	TNRC6C	71	53.070	Anas_platyrhynchos
ENSGACG00000012320	tnrc6c1	99	47.826	ENSACAG00000016198	TNRC6C	71	52.880	Anolis_carolinensis
ENSGACG00000012320	tnrc6c1	97	47.914	ENSANAG00000021554	TNRC6C	95	52.701	Aotus_nancymaae
ENSGACG00000012320	tnrc6c1	92	69.668	ENSACLG00000000424	tnrc6c1	99	69.590	Astatotilapia_calliptera
ENSGACG00000012320	tnrc6c1	97	46.247	ENSBTAG00000018658	TNRC6C	97	46.000	Bos_taurus
ENSGACG00000012320	tnrc6c1	97	47.813	ENSCJAG00000019431	TNRC6C	95	52.460	Callithrix_jacchus
ENSGACG00000012320	tnrc6c1	97	47.672	ENSCAFG00000005224	TNRC6C	78	50.000	Canis_familiaris
ENSGACG00000012320	tnrc6c1	97	48.608	ENSCAFG00020006661	TNRC6C	80	52.736	Canis_lupus_dingo
ENSGACG00000012320	tnrc6c1	97	47.156	ENSCHIG00000026004	TNRC6C	97	46.837	Capra_hircus
ENSGACG00000012320	tnrc6c1	86	49.403	ENSTSYG00000005403	TNRC6C	80	52.228	Carlito_syrichta
ENSGACG00000012320	tnrc6c1	97	46.502	ENSCAPG00000007307	TNRC6C	90	50.499	Cavia_aperea
ENSGACG00000012320	tnrc6c1	97	49.123	ENSCPOG00000000467	TNRC6C	93	54.292	Cavia_porcellus
ENSGACG00000012320	tnrc6c1	99	47.177	ENSCCAG00000030524	TNRC6C	95	52.493	Cebus_capucinus
ENSGACG00000012320	tnrc6c1	97	47.916	ENSCATG00000033135	TNRC6C	95	52.632	Cercocebus_atys
ENSGACG00000012320	tnrc6c1	97	47.739	ENSCSAG00000005167	TNRC6C	95	52.391	Chlorocebus_sabaeus
ENSGACG00000012320	tnrc6c1	59	62.171	ENSCHOG00000000088	TNRC6C	66	62.117	Choloepus_hoffmanni
ENSGACG00000012320	tnrc6c1	92	49.430	ENSCPBG00000027960	TNRC6C	92	54.584	Chrysemys_picta_bellii
ENSGACG00000012320	tnrc6c1	97	48.016	ENSCANG00000041771	TNRC6C	95	52.701	Colobus_angolensis_palliatus
ENSGACG00000012320	tnrc6c1	99	47.888	ENSCGRG00001022686	Tnrc6c	91	49.937	Cricetulus_griseus_chok1gshd
ENSGACG00000012320	tnrc6c1	99	47.888	ENSCGRG00000018041	Tnrc6c	99	47.390	Cricetulus_griseus_crigri
ENSGACG00000012320	tnrc6c1	98	70.617	ENSCSEG00000012744	tnrc6c1	100	70.885	Cynoglossus_semilaevis
ENSGACG00000012320	tnrc6c1	98	59.139	ENSDARG00000076847	tnrc6c1	100	60.031	Danio_rerio
ENSGACG00000012320	tnrc6c1	99	45.848	ENSDNOG00000003247	TNRC6C	87	51.507	Dasypus_novemcinctus
ENSGACG00000012320	tnrc6c1	97	46.891	ENSDORG00000004558	Tnrc6c	80	52.177	Dipodomys_ordii
ENSGACG00000012320	tnrc6c1	83	53.931	ENSETEG00000005527	TNRC6C	81	54.362	Echinops_telfairi
ENSGACG00000012320	tnrc6c1	86	49.507	ENSEASG00005004799	TNRC6C	80	53.485	Equus_asinus_asinus
ENSGACG00000012320	tnrc6c1	86	53.922	ENSEEUG00000010008	TNRC6C	76	54.237	Erinaceus_europaeus
ENSGACG00000012320	tnrc6c1	99	47.053	ENSFCAG00000028358	TNRC6C	80	53.348	Felis_catus
ENSGACG00000012320	tnrc6c1	86	48.177	ENSFALG00000000848	TNRC6C	78	52.056	Ficedula_albicollis
ENSGACG00000012320	tnrc6c1	90	48.874	ENSFDAG00000010368	TNRC6C	78	54.259	Fukomys_damarensis
ENSGACG00000012320	tnrc6c1	99	72.317	ENSFHEG00000002936	tnrc6c1	100	73.319	Fundulus_heteroclitus
ENSGACG00000012320	tnrc6c1	71	55.857	ENSGALG00000001725	TNRC6C	77	55.792	Gallus_gallus
ENSGACG00000012320	tnrc6c1	99	72.698	ENSGAFG00000019019	tnrc6c1	100	73.345	Gambusia_affinis
ENSGACG00000012320	tnrc6c1	92	49.595	ENSGAGG00000022043	TNRC6C	92	54.288	Gopherus_agassizii
ENSGACG00000012320	tnrc6c1	99	47.206	ENSGGOG00000011304	TNRC6C	95	52.460	Gorilla_gorilla
ENSGACG00000012320	tnrc6c1	98	73.932	ENSHBUG00000010846	tnrc6c1	100	74.549	Haplochromis_burtoni
ENSGACG00000012320	tnrc6c1	99	59.488	ENSIPUG00000000818	tnrc6c1	99	58.333	Ictalurus_punctatus
ENSGACG00000012320	tnrc6c1	97	48.664	ENSSTOG00000009101	TNRC6C	91	54.572	Ictidomys_tridecemlineatus
ENSGACG00000012320	tnrc6c1	97	47.577	ENSJJAG00000017055	Tnrc6c	71	53.248	Jaculus_jaculus
ENSGACG00000012320	tnrc6c1	99	69.502	ENSKMAG00000021023	tnrc6c1	100	73.681	Kryptolebias_marmoratus
ENSGACG00000012320	tnrc6c1	90	46.656	ENSLACG00000015283	TNRC6C	91	50.835	Latimeria_chalumnae
ENSGACG00000012320	tnrc6c1	99	58.497	ENSLOCG00000013377	tnrc6c1	100	59.393	Lepisosteus_oculatus
ENSGACG00000012320	tnrc6c1	99	47.614	ENSLAFG00000011122	TNRC6C	74	50.563	Loxodonta_africana
ENSGACG00000012320	tnrc6c1	97	47.966	ENSMFAG00000043943	TNRC6C	93	52.632	Macaca_fascicularis
ENSGACG00000012320	tnrc6c1	97	47.839	ENSMMUG00000011924	TNRC6C	93	52.460	Macaca_mulatta
ENSGACG00000012320	tnrc6c1	97	47.916	ENSMNEG00000030405	TNRC6C	95	52.562	Macaca_nemestrina
ENSGACG00000012320	tnrc6c1	97	47.966	ENSMLEG00000033436	TNRC6C	95	52.632	Mandrillus_leucophaeus
ENSGACG00000012320	tnrc6c1	99	74.567	ENSMAMG00000023613	tnrc6c1	99	76.787	Mastacembelus_armatus
ENSGACG00000012320	tnrc6c1	98	74.011	ENSMZEG00005010920	tnrc6c1	100	73.291	Maylandia_zebra
ENSGACG00000012320	tnrc6c1	90	65.704	ENSMGAG00000003906	TNRC6C	63	64.982	Meleagris_gallopavo
ENSGACG00000012320	tnrc6c1	86	50.088	ENSMAUG00000021618	Tnrc6c	80	53.348	Mesocricetus_auratus
ENSGACG00000012320	tnrc6c1	97	47.458	ENSMICG00000003952	TNRC6C	80	53.747	Microcebus_murinus
ENSGACG00000012320	tnrc6c1	97	47.949	ENSMOCG00000015879	Tnrc6c	77	53.582	Microtus_ochrogaster
ENSGACG00000012320	tnrc6c1	88	77.538	ENSMMOG00000005203	tnrc6c1	100	76.890	Mola_mola
ENSGACG00000012320	tnrc6c1	97	49.175	ENSMODG00000001785	TNRC6C	71	54.623	Monodelphis_domestica
ENSGACG00000012320	tnrc6c1	97	47.869	MGP_CAROLIEiJ_G0017465	Tnrc6c	77	53.190	Mus_caroli
ENSGACG00000012320	tnrc6c1	97	48.062	ENSMUSG00000025571	Tnrc6c	77	53.190	Mus_musculus
ENSGACG00000012320	tnrc6c1	97	48.093	MGP_PahariEiJ_G0018593	Tnrc6c	77	53.333	Mus_pahari
ENSGACG00000012320	tnrc6c1	97	47.907	MGP_SPRETEiJ_G0018309	Tnrc6c	94	52.748	Mus_spretus
ENSGACG00000012320	tnrc6c1	97	46.921	ENSMPUG00000013348	TNRC6C	92	51.955	Mustela_putorius_furo
ENSGACG00000012320	tnrc6c1	97	45.779	ENSMLUG00000014431	TNRC6C	94	50.481	Myotis_lucifugus
ENSGACG00000012320	tnrc6c1	97	48.319	ENSNGAG00000012203	Tnrc6c	93	53.243	Nannospalax_galili
ENSGACG00000012320	tnrc6c1	92	74.161	ENSNBRG00000005344	tnrc6c1	99	74.089	Neolamprologus_brichardi
ENSGACG00000012320	tnrc6c1	97	46.398	ENSNLEG00000000047	TNRC6C	92	50.521	Nomascus_leucogenys
ENSGACG00000012320	tnrc6c1	86	49.798	ENSODEG00000012499	TNRC6C	80	54.396	Octodon_degus
ENSGACG00000012320	tnrc6c1	88	74.647	ENSONIG00000002210	tnrc6c1	100	75.169	Oreochromis_niloticus
ENSGACG00000012320	tnrc6c1	70	90.000	ENSOANG00000009758	-	68	91.667	Ornithorhynchus_anatinus
ENSGACG00000012320	tnrc6c1	84	40.875	ENSOCUG00000006122	TNRC6C	62	46.866	Oryctolagus_cuniculus
ENSGACG00000012320	tnrc6c1	92	69.761	ENSORLG00000009837	tnrc6c1	100	82.847	Oryzias_latipes
ENSGACG00000012320	tnrc6c1	92	68.263	ENSORLG00020016510	tnrc6c1	100	69.988	Oryzias_latipes_hni
ENSGACG00000012320	tnrc6c1	74	65.156	ENSORLG00015000171	tnrc6c1	99	65.382	Oryzias_latipes_hsok
ENSGACG00000012320	tnrc6c1	92	70.926	ENSOMEG00000000357	tnrc6c1	99	70.153	Oryzias_melastigma
ENSGACG00000012320	tnrc6c1	86	47.389	ENSOGAG00000007197	TNRC6C	80	51.638	Otolemur_garnettii
ENSGACG00000012320	tnrc6c1	93	43.914	ENSOARG00000006041	TNRC6C	100	43.885	Ovis_aries
ENSGACG00000012320	tnrc6c1	99	47.157	ENSPPAG00000027160	TNRC6C	93	52.529	Pan_paniscus
ENSGACG00000012320	tnrc6c1	99	47.181	ENSPPRG00000018881	TNRC6C	80	53.419	Panthera_pardus
ENSGACG00000012320	tnrc6c1	93	42.975	ENSPTIG00000008791	TNRC6C	75	44.536	Panthera_tigris_altaica
ENSGACG00000012320	tnrc6c1	97	47.940	ENSPTRG00000009699	TNRC6C	95	52.599	Pan_troglodytes
ENSGACG00000012320	tnrc6c1	97	47.916	ENSPANG00000019994	TNRC6C	95	52.632	Papio_anubis
ENSGACG00000012320	tnrc6c1	85	56.159	ENSPKIG00000005428	tnrc6c1	100	56.418	Paramormyrops_kingsleyae
ENSGACG00000012320	tnrc6c1	90	49.036	ENSPSIG00000018069	TNRC6C	88	55.656	Pelodiscus_sinensis
ENSGACG00000012320	tnrc6c1	78	68.776	ENSPMGG00000022911	tnrc6c1	98	78.776	Periophthalmus_magnuspinnatus
ENSGACG00000012320	tnrc6c1	96	48.646	ENSPEMG00000009785	Tnrc6c	80	50.535	Peromyscus_maniculatus_bairdii
ENSGACG00000012320	tnrc6c1	100	72.946	ENSPFOG00000012560	tnrc6c1	100	72.527	Poecilia_formosa
ENSGACG00000012320	tnrc6c1	88	74.444	ENSPLAG00000021055	tnrc6c1	100	73.422	Poecilia_latipinna
ENSGACG00000012320	tnrc6c1	97	47.813	ENSPPYG00000008679	TNRC6C	94	52.427	Pongo_abelii
ENSGACG00000012320	tnrc6c1	63	63.820	ENSPCAG00000012510	TNRC6C	67	64.045	Procavia_capensis
ENSGACG00000012320	tnrc6c1	86	49.913	ENSPCOG00000021451	TNRC6C	80	53.923	Propithecus_coquereli
ENSGACG00000012320	tnrc6c1	65	61.111	ENSPVAG00000002008	TNRC6C	73	59.524	Pteropus_vampyrus
ENSGACG00000012320	tnrc6c1	92	72.753	ENSPNYG00000014477	tnrc6c1	100	73.709	Pundamilia_nyererei
ENSGACG00000012320	tnrc6c1	86	49.238	ENSRNOG00000022395	Tnrc6c	91	50.314	Rattus_norvegicus
ENSGACG00000012320	tnrc6c1	97	48.016	ENSRBIG00000027777	TNRC6C	92	52.701	Rhinopithecus_bieti
ENSGACG00000012320	tnrc6c1	97	48.016	ENSRROG00000042912	TNRC6C	95	52.701	Rhinopithecus_roxellana
ENSGACG00000012320	tnrc6c1	97	48.157	ENSSBOG00000023981	TNRC6C	80	52.252	Saimiri_boliviensis_boliviensis
ENSGACG00000012320	tnrc6c1	98	56.775	ENSSFOG00015006475	tnrc6c1	99	57.013	Scleropages_formosus
ENSGACG00000012320	tnrc6c1	89	59.105	ENSSFOG00015004735	-	99	65.128	Scleropages_formosus
ENSGACG00000012320	tnrc6c1	92	77.924	ENSSMAG00000012761	tnrc6c1	100	78.614	Scophthalmus_maximus
ENSGACG00000012320	tnrc6c1	92	78.878	ENSSDUG00000002366	tnrc6c1	99	79.203	Seriola_dumerili
ENSGACG00000012320	tnrc6c1	88	79.360	ENSSLDG00000025613	tnrc6c1	100	79.421	Seriola_lalandi_dorsalis
ENSGACG00000012320	tnrc6c1	76	72.340	ENSSPUG00000007341	TNRC6C	88	71.429	Sphenodon_punctatus
ENSGACG00000012320	tnrc6c1	98	75.040	ENSSPAG00000014977	tnrc6c1	98	77.675	Stegastes_partitus
ENSGACG00000012320	tnrc6c1	87	49.539	ENSSSCG00000034373	TNRC6C	80	53.868	Sus_scrofa
ENSGACG00000012320	tnrc6c1	71	55.263	ENSTGUG00000007733	TNRC6C	75	55.051	Taeniopygia_guttata
ENSGACG00000012320	tnrc6c1	92	71.970	ENSTRUG00000011685	tnrc6c1	100	72.589	Takifugu_rubripes
ENSGACG00000012320	tnrc6c1	92	71.892	ENSTNIG00000005273	tnrc6c1	100	73.973	Tetraodon_nigroviridis
ENSGACG00000012320	tnrc6c1	60	50.351	ENSTBEG00000005046	TNRC6C	100	49.873	Tupaia_belangeri
ENSGACG00000012320	tnrc6c1	90	48.871	ENSTTRG00000010828	TNRC6C	93	53.352	Tursiops_truncatus
ENSGACG00000012320	tnrc6c1	97	46.873	ENSUMAG00000013614	TNRC6C	72	51.008	Ursus_maritimus
ENSGACG00000012320	tnrc6c1	86	50.146	ENSVVUG00000015268	TNRC6C	80	53.934	Vulpes_vulpes
ENSGACG00000012320	tnrc6c1	86	49.417	ENSXETG00000019470	tnrc6c	76	54.135	Xenopus_tropicalis
ENSGACG00000012320	tnrc6c1	99	72.936	ENSXMAG00000025971	tnrc6c1	100	73.390	Xiphophorus_maculatus