EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000012548 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 32063 bases
Position: chrgroupXI:11761642-11793704
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000016587	MMR_HSR1	PF01926.23	4.9e-06	1	1
ENSGACP00000016590	MMR_HSR1	PF01926.23	5.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000016623	-	964	-	ENSGACP00000016590	301 (aa)	-	G3PG66
ENSGACT00000016620	-	957	-	ENSGACP00000016587	295 (aa)	-	G3PG63

Gene Model

Click here to download ENSGACG00000012548's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000012548's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000012548	-	93	95.238	ENSGACG00000012556	-	88	95.238
ENSGACG00000012548	-	92	34.559	ENSGACG00000007958	si:ch211-197g15.10	63	34.307
ENSGACG00000012548	-	91	35.185	ENSGACG00000009755	zgc:153654	59	35.185
ENSGACG00000012548	-	92	94.074	ENSGACG00000001319	-	100	94.074

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000012548	-	91	53.903	ENSACIG00000004444	-	97	53.903	Amphilophus_citrinellus
ENSGACG00000012548	-	89	58.779	ENSACIG00000015684	-	93	58.779	Amphilophus_citrinellus
ENSGACG00000012548	-	89	40.152	ENSACIG00000015237	-	90	41.975	Amphilophus_citrinellus
ENSGACG00000012548	-	93	52.190	ENSACIG00000004501	-	95	52.190	Amphilophus_citrinellus
ENSGACG00000012548	-	89	60.687	ENSACIG00000000741	-	93	60.920	Amphilophus_citrinellus
ENSGACG00000012548	-	88	59.073	ENSACIG00000004426	-	89	59.073	Amphilophus_citrinellus
ENSGACG00000012548	-	89	55.725	ENSACIG00000004521	-	92	55.725	Amphilophus_citrinellus
ENSGACG00000012548	-	89	54.924	ENSACIG00000004408	-	91	54.924	Amphilophus_citrinellus
ENSGACG00000012548	-	89	57.576	ENSACIG00000015616	-	98	55.147	Amphilophus_citrinellus
ENSGACG00000012548	-	93	54.152	ENSAOCG00000002056	-	92	54.152	Amphiprion_ocellaris
ENSGACG00000012548	-	93	53.650	ENSAPEG00000021053	-	97	53.650	Amphiprion_percula
ENSGACG00000012548	-	99	46.959	ENSATEG00000002718	-	86	47.273	Anabas_testudineus
ENSGACG00000012548	-	89	53.992	ENSATEG00000002869	-	94	54.198	Anabas_testudineus
ENSGACG00000012548	-	91	55.390	ENSACLG00000016487	-	90	55.390	Astatotilapia_calliptera
ENSGACG00000012548	-	86	46.512	ENSACLG00000018321	-	90	46.512	Astatotilapia_calliptera
ENSGACG00000012548	-	88	48.649	ENSACLG00000002020	-	95	48.649	Astatotilapia_calliptera
ENSGACG00000012548	-	90	45.185	ENSACLG00000010292	-	95	45.185	Astatotilapia_calliptera
ENSGACG00000012548	-	89	50.189	ENSACLG00000027615	-	99	50.189	Astatotilapia_calliptera
ENSGACG00000012548	-	83	45.492	ENSACLG00000016390	-	94	45.492	Astatotilapia_calliptera
ENSGACG00000012548	-	85	36.111	ENSAMXG00000037563	-	89	36.111	Astyanax_mexicanus
ENSGACG00000012548	-	87	50.000	ENSCSEG00000018832	-	96	50.000	Cynoglossus_semilaevis
ENSGACG00000012548	-	59	44.068	ENSCVAG00000014640	-	81	44.068	Cyprinodon_variegatus
ENSGACG00000012548	-	85	45.136	ENSCVAG00000007214	-	98	44.706	Cyprinodon_variegatus
ENSGACG00000012548	-	87	48.249	ENSCVAG00000023166	-	97	48.249	Cyprinodon_variegatus
ENSGACG00000012548	-	93	44.604	ENSCVAG00000016719	-	96	44.404	Cyprinodon_variegatus
ENSGACG00000012548	-	96	36.332	ENSDARG00000029720	si:dkeyp-9d4.2	95	37.024	Danio_rerio
ENSGACG00000012548	-	98	38.384	ENSDARG00000095673	si:dkey-79f11.8	82	39.405	Danio_rerio
ENSGACG00000012548	-	92	38.828	ENSDARG00000093857	si:dkey-79f11.10	85	38.828	Danio_rerio
ENSGACG00000012548	-	99	38.435	ENSDARG00000092634	CABZ01000634.1	92	38.462	Danio_rerio
ENSGACG00000012548	-	89	39.326	ENSDARG00000075791	si:dkey-79f11.5	84	39.326	Danio_rerio
ENSGACG00000012548	-	98	36.111	ENSDARG00000010729	CABZ01073795.1	92	36.330	Danio_rerio
ENSGACG00000012548	-	91	39.033	ENSDARG00000107486	CR855320.3	91	39.033	Danio_rerio
ENSGACG00000012548	-	71	45.455	ENSDARG00000015678	si:dkeyp-75b4.9	99	45.455	Danio_rerio
ENSGACG00000012548	-	61	34.783	ENSDARG00000092361	si:dkey-79f11.7	71	36.310	Danio_rerio
ENSGACG00000012548	-	88	36.466	ENSDARG00000095309	si:dkey-79f11.9	93	36.466	Danio_rerio
ENSGACG00000012548	-	86	43.701	ENSFHEG00000018078	-	92	43.701	Fundulus_heteroclitus
ENSGACG00000012548	-	73	49.315	ENSFHEG00000019992	-	74	49.315	Fundulus_heteroclitus
ENSGACG00000012548	-	99	46.758	ENSFHEG00000018069	-	93	47.636	Fundulus_heteroclitus
ENSGACG00000012548	-	88	47.547	ENSFHEG00000021105	-	88	47.547	Fundulus_heteroclitus
ENSGACG00000012548	-	92	44.853	ENSGAFG00000019423	-	60	44.853	Gambusia_affinis
ENSGACG00000012548	-	82	43.902	ENSGAFG00000019422	-	95	43.725	Gambusia_affinis
ENSGACG00000012548	-	89	51.145	ENSHBUG00000010945	-	90	54.321	Haplochromis_burtoni
ENSGACG00000012548	-	89	41.509	ENSIPUG00000006852	-	83	41.509	Ictalurus_punctatus
ENSGACG00000012548	-	61	35.912	ENSIPUG00000006725	-	90	35.519	Ictalurus_punctatus
ENSGACG00000012548	-	89	41.065	ENSIPUG00000007632	-	75	41.065	Ictalurus_punctatus
ENSGACG00000012548	-	87	41.085	ENSIPUG00000005624	-	96	40.769	Ictalurus_punctatus
ENSGACG00000012548	-	85	49.407	ENSKMAG00000000369	-	93	49.407	Kryptolebias_marmoratus
ENSGACG00000012548	-	92	47.810	ENSKMAG00000000325	-	98	47.810	Kryptolebias_marmoratus
ENSGACG00000012548	-	92	49.815	ENSKMAG00000006729	-	99	49.815	Kryptolebias_marmoratus
ENSGACG00000012548	-	88	52.874	ENSMAMG00000003570	-	91	52.874	Mastacembelus_armatus
ENSGACG00000012548	-	93	43.728	ENSMAMG00000003546	-	91	44.000	Mastacembelus_armatus
ENSGACG00000012548	-	88	55.172	ENSMZEG00005008301	-	99	54.167	Maylandia_zebra
ENSGACG00000012548	-	89	54.753	ENSMZEG00005008329	-	99	54.753	Maylandia_zebra
ENSGACG00000012548	-	86	46.512	ENSMZEG00005015498	-	90	46.512	Maylandia_zebra
ENSGACG00000012548	-	88	53.640	ENSNBRG00000006414	-	88	53.640	Neolamprologus_brichardi
ENSGACG00000012548	-	90	46.468	ENSNBRG00000023290	-	89	46.468	Neolamprologus_brichardi
ENSGACG00000012548	-	89	56.061	ENSNBRG00000006386	-	99	56.061	Neolamprologus_brichardi
ENSGACG00000012548	-	88	54.789	ENSNBRG00000022075	-	91	55.469	Neolamprologus_brichardi
ENSGACG00000012548	-	92	46.570	ENSNBRG00000020744	-	91	46.840	Neolamprologus_brichardi
ENSGACG00000012548	-	90	53.333	ENSNBRG00000020806	-	92	53.333	Neolamprologus_brichardi
ENSGACG00000012548	-	83	55.918	ENSNBRG00000020781	-	98	55.918	Neolamprologus_brichardi
ENSGACG00000012548	-	86	47.674	ENSNBRG00000024253	-	87	47.674	Neolamprologus_brichardi
ENSGACG00000012548	-	87	52.734	ENSONIG00000015371	-	99	52.734	Oreochromis_niloticus
ENSGACG00000012548	-	84	54.435	ENSONIG00000017465	-	99	54.656	Oreochromis_niloticus
ENSGACG00000012548	-	93	40.647	ENSONIG00000018790	-	94	40.647	Oreochromis_niloticus
ENSGACG00000012548	-	88	53.640	ENSONIG00000015247	-	92	53.640	Oreochromis_niloticus
ENSGACG00000012548	-	88	55.598	ENSONIG00000015167	-	100	55.598	Oreochromis_niloticus
ENSGACG00000012548	-	83	50.000	ENSONIG00000016843	-	99	50.000	Oreochromis_niloticus
ENSGACG00000012548	-	61	58.011	ENSONIG00000013227	-	100	58.011	Oreochromis_niloticus
ENSGACG00000012548	-	88	56.538	ENSONIG00000012319	-	100	56.538	Oreochromis_niloticus
ENSGACG00000012548	-	83	54.286	ENSONIG00000012317	-	98	54.286	Oreochromis_niloticus
ENSGACG00000012548	-	88	51.737	ENSPMGG00000012906	-	92	51.737	Periophthalmus_magnuspinnatus
ENSGACG00000012548	-	91	42.910	ENSPMGG00000004994	-	93	42.910	Periophthalmus_magnuspinnatus
ENSGACG00000012548	-	87	46.792	ENSPMGG00000002695	-	98	46.792	Periophthalmus_magnuspinnatus
ENSGACG00000012548	-	90	44.906	ENSPMGG00000022341	-	79	44.906	Periophthalmus_magnuspinnatus
ENSGACG00000012548	-	92	44.526	ENSPFOG00000015493	-	94	44.526	Poecilia_formosa
ENSGACG00000012548	-	91	47.584	ENSPFOG00000003841	-	93	47.253	Poecilia_formosa
ENSGACG00000012548	-	91	44.030	ENSPFOG00000015455	-	89	44.030	Poecilia_formosa
ENSGACG00000012548	-	98	45.704	ENSPFOG00000015382	-	94	46.863	Poecilia_formosa
ENSGACG00000012548	-	91	48.327	ENSPFOG00000003807	-	94	48.889	Poecilia_formosa
ENSGACG00000012548	-	92	46.667	ENSPLAG00000018274	-	96	46.667	Poecilia_latipinna
ENSGACG00000012548	-	88	44.788	ENSPMEG00000018626	-	91	44.788	Poecilia_mexicana
ENSGACG00000012548	-	98	45.862	ENSPMEG00000018635	-	94	47.037	Poecilia_mexicana
ENSGACG00000012548	-	91	45.725	ENSPREG00000005137	-	96	46.729	Poecilia_reticulata
ENSGACG00000012548	-	93	51.825	ENSPNYG00000024019	-	91	51.648	Pundamilia_nyererei
ENSGACG00000012548	-	92	52.399	ENSPNYG00000005478	-	94	52.399	Pundamilia_nyererei
ENSGACG00000012548	-	86	46.512	ENSPNYG00000001584	-	90	46.512	Pundamilia_nyererei
ENSGACG00000012548	-	92	34.737	ENSPNAG00000006327	-	69	34.737	Pygocentrus_nattereri
ENSGACG00000012548	-	90	42.481	ENSPNAG00000009266	-	97	42.481	Pygocentrus_nattereri
ENSGACG00000012548	-	90	51.128	ENSSDUG00000002417	-	98	51.128	Seriola_dumerili
ENSGACG00000012548	-	90	51.128	ENSSDUG00000002359	-	98	51.128	Seriola_dumerili
ENSGACG00000012548	-	99	48.973	ENSSLDG00000008952	-	96	50.916	Seriola_lalandi_dorsalis
ENSGACG00000012548	-	89	52.075	ENSSLDG00000016397	-	98	52.075	Seriola_lalandi_dorsalis
ENSGACG00000012548	-	88	57.854	ENSSPAG00000012915	-	98	57.854	Stegastes_partitus
ENSGACG00000012548	-	91	58.364	ENSSPAG00000012856	-	95	58.364	Stegastes_partitus
ENSGACG00000012548	-	66	51.515	ENSXCOG00000008517	-	61	51.515	Xiphophorus_couchianus
ENSGACG00000012548	-	57	49.711	ENSXCOG00000003913	-	87	49.711	Xiphophorus_couchianus
ENSGACG00000012548	-	76	44.298	ENSXCOG00000019639	-	86	44.298	Xiphophorus_couchianus
ENSGACG00000012548	-	87	44.615	ENSXMAG00000009971	-	68	44.615	Xiphophorus_maculatus
ENSGACG00000012548	-	89	45.489	ENSXMAG00000009973	-	91	45.736	Xiphophorus_maculatus
ENSGACG00000012548	-	91	48.162	ENSXMAG00000029117	-	96	48.162	Xiphophorus_maculatus