EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000012612 (Gene tree)
Gene ID: -
Gene Symbol: rbm28
Alias: zgc:56258
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 5838 bases
Position: chrgroupXIX:16082531-16088368
Accession: ZDB-GENE-040426-960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000016690	RRM_1	PF00076.22	1.2e-57	1	3
ENSGACP00000016690	RRM_1	PF00076.22	1.2e-57	2	3
ENSGACP00000016690	RRM_1	PF00076.22	1.2e-57	3	3
ENSGACP00000016696	RRM_1	PF00076.22	1.6e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000016730	-	2127	-	ENSGACP00000016696	600 (aa)	-	G3PGH2
ENSGACT00000016724	-	2157	-	ENSGACP00000016690	719 (aa)	-	G3PGG6

Gene Model

Click here to download ENSGACG00000012612's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000012612's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000012612	rbm28	56	30.726	ENSGACG00000003572	pabpc1a	56	30.726
ENSGACG00000012612	rbm28	73	30.899	ENSGACG00000003771	pabpc1b	56	30.899
ENSGACG00000012612	rbm28	52	32.222	ENSGACG00000008970	ncl	50	32.222

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000012612	rbm28	82	52.410	ENSG00000106344	RBM28	100	46.569	Homo_sapiens
ENSGACG00000012612	rbm28	73	73.923	ENSAPOG00000015512	rbm28	58	74.099	Acanthochromis_polyacanthus
ENSGACG00000012612	rbm28	97	56.098	ENSAMEG00000004776	RBM28	64	56.410	Ailuropoda_melanoleuca
ENSGACG00000012612	rbm28	71	71.663	ENSACIG00000023153	rbm28	91	73.735	Amphilophus_citrinellus
ENSGACG00000012612	rbm28	73	73.923	ENSAOCG00000000462	rbm28	58	74.099	Amphiprion_ocellaris
ENSGACG00000012612	rbm28	73	73.696	ENSAPEG00000012996	rbm28	58	73.874	Amphiprion_percula
ENSGACG00000012612	rbm28	100	65.395	ENSATEG00000001672	rbm28	68	65.393	Anabas_testudineus
ENSGACG00000012612	rbm28	100	52.368	ENSANAG00000033922	RBM28	76	65.714	Aotus_nancymaae
ENSGACG00000012612	rbm28	100	67.710	ENSACLG00000025024	rbm28	58	75.281	Astatotilapia_calliptera
ENSGACG00000012612	rbm28	74	57.848	ENSAMXG00000000763	rbm28	99	60.563	Astyanax_mexicanus
ENSGACG00000012612	rbm28	100	51.117	ENSBTAG00000017001	RBM28	77	65.714	Bos_taurus
ENSGACG00000012612	rbm28	72	65.714	ENSCJAG00000017731	RBM28	75	65.714	Callithrix_jacchus
ENSGACG00000012612	rbm28	100	50.529	ENSCAFG00000001667	RBM28	58	54.943	Canis_familiaris
ENSGACG00000012612	rbm28	100	50.529	ENSCAFG00020021648	RBM28	58	54.943	Canis_lupus_dingo
ENSGACG00000012612	rbm28	100	50.590	ENSCHIG00000014146	RBM28	58	55.172	Capra_hircus
ENSGACG00000012612	rbm28	99	47.455	ENSTSYG00000002892	RBM28	77	62.857	Carlito_syrichta
ENSGACG00000012612	rbm28	89	35.888	ENSCAPG00000013218	RBM28	79	35.327	Cavia_aperea
ENSGACG00000012612	rbm28	80	53.416	ENSCPOG00000006253	RBM28	57	55.862	Cavia_porcellus
ENSGACG00000012612	rbm28	100	46.452	ENSCCAG00000035105	RBM28	76	65.714	Cebus_capucinus
ENSGACG00000012612	rbm28	82	52.104	ENSCATG00000040497	RBM28	76	61.538	Cercocebus_atys
ENSGACG00000012612	rbm28	100	48.153	ENSCLAG00000003707	RBM28	60	55.125	Chinchilla_lanigera
ENSGACG00000012612	rbm28	82	52.104	ENSCSAG00000010161	RBM28	57	56.092	Chlorocebus_sabaeus
ENSGACG00000012612	rbm28	57	57.258	ENSCHOG00000001994	-	62	55.000	Choloepus_hoffmanni
ENSGACG00000012612	rbm28	67	49.227	ENSCPBG00000018088	RBM28	76	50.860	Chrysemys_picta_bellii
ENSGACG00000012612	rbm28	56	43.452	ENSCSAVG00000007149	-	94	44.343	Ciona_savignyi
ENSGACG00000012612	rbm28	85	47.861	ENSCANG00000038397	RBM28	72	65.714	Colobus_angolensis_palliatus
ENSGACG00000012612	rbm28	83	51.297	ENSCGRG00001021278	Rbm28	55	55.991	Cricetulus_griseus_chok1gshd
ENSGACG00000012612	rbm28	100	47.403	ENSCGRG00000005098	Rbm28	57	55.991	Cricetulus_griseus_crigri
ENSGACG00000012612	rbm28	100	62.566	ENSCSEG00000004212	rbm28	59	70.946	Cynoglossus_semilaevis
ENSGACG00000012612	rbm28	75	73.009	ENSCVAG00000010493	rbm28	57	73.529	Cyprinodon_variegatus
ENSGACG00000012612	rbm28	100	52.736	ENSDARG00000025332	rbm28	74	57.528	Danio_rerio
ENSGACG00000012612	rbm28	100	47.134	ENSDNOG00000001124	RBM28	57	56.322	Dasypus_novemcinctus
ENSGACG00000012612	rbm28	83	49.409	ENSDORG00000004184	Rbm28	85	54.608	Dipodomys_ordii
ENSGACG00000012612	rbm28	80	47.917	ENSETEG00000007130	RBM28	56	51.799	Echinops_telfairi
ENSGACG00000012612	rbm28	99	40.417	ENSEBUG00000004419	rbm28	60	44.159	Eptatretus_burgeri
ENSGACG00000012612	rbm28	84	51.072	ENSEASG00005008528	RBM28	56	54.649	Equus_asinus_asinus
ENSGACG00000012612	rbm28	84	51.072	ENSECAG00000007745	RBM28	56	54.649	Equus_caballus
ENSGACG00000012612	rbm28	100	46.224	ENSEEUG00000002389	RBM28	57	50.337	Erinaceus_europaeus
ENSGACG00000012612	rbm28	100	55.627	ENSELUG00000020602	rbm28	59	62.745	Esox_lucius
ENSGACG00000012612	rbm28	100	50.198	ENSFCAG00000000946	RBM28	77	65.714	Felis_catus
ENSGACG00000012612	rbm28	100	51.592	ENSFDAG00000010169	RBM28	58	55.479	Fukomys_damarensis
ENSGACG00000012612	rbm28	99	60.784	ENSGMOG00000007091	rbm28	69	62.727	Gadus_morhua
ENSGACG00000012612	rbm28	75	70.133	ENSGAFG00000004802	rbm28	96	70.655	Gambusia_affinis
ENSGACG00000012612	rbm28	84	56.853	ENSGAGG00000008873	RBM28	89	57.754	Gopherus_agassizii
ENSGACG00000012612	rbm28	82	52.008	ENSGGOG00000004644	RBM28	59	55.632	Gorilla_gorilla
ENSGACG00000012612	rbm28	93	67.972	ENSHBUG00000009611	rbm28	55	75.500	Haplochromis_burtoni
ENSGACG00000012612	rbm28	100	50.991	ENSHGLG00000005409	RBM28	58	54.670	Heterocephalus_glaber_female
ENSGACG00000012612	rbm28	100	50.991	ENSHGLG00100016458	RBM28	58	54.670	Heterocephalus_glaber_male
ENSGACG00000012612	rbm28	84	56.552	ENSHCOG00000010597	rbm28	83	56.808	Hippocampus_comes
ENSGACG00000012612	rbm28	72	47.442	ENSIPUG00000007103	rbm28	81	48.936	Ictalurus_punctatus
ENSGACG00000012612	rbm28	83	53.293	ENSSTOG00000002169	RBM28	57	55.381	Ictidomys_tridecemlineatus
ENSGACG00000012612	rbm28	100	46.964	ENSJJAG00000022400	Rbm28	59	54.588	Jaculus_jaculus
ENSGACG00000012612	rbm28	74	69.058	ENSKMAG00000013348	rbm28	58	68.919	Kryptolebias_marmoratus
ENSGACG00000012612	rbm28	75	74.336	ENSLBEG00000012998	rbm28	56	74.550	Labrus_bergylta
ENSGACG00000012612	rbm28	100	56.701	ENSLOCG00000015541	rbm28	75	59.226	Lepisosteus_oculatus
ENSGACG00000012612	rbm28	100	51.969	ENSLAFG00000010717	RBM28	57	56.193	Loxodonta_africana
ENSGACG00000012612	rbm28	99	47.673	ENSMFAG00000031036	RBM28	76	61.538	Macaca_fascicularis
ENSGACG00000012612	rbm28	99	47.276	ENSMMUG00000007250	RBM28	76	61.538	Macaca_mulatta
ENSGACG00000012612	rbm28	91	73.333	ENSMNEG00000036970	RBM28	76	61.538	Macaca_nemestrina
ENSGACG00000012612	rbm28	100	65.785	ENSMAMG00000008525	rbm28	58	74.541	Mastacembelus_armatus
ENSGACG00000012612	rbm28	100	67.875	ENSMZEG00005019625	rbm28	63	75.281	Maylandia_zebra
ENSGACG00000012612	rbm28	83	50.398	ENSMAUG00000002263	Rbm28	55	54.157	Mesocricetus_auratus
ENSGACG00000012612	rbm28	84	50.489	ENSMICG00000000107	RBM28	60	55.862	Microcebus_murinus
ENSGACG00000012612	rbm28	100	49.542	ENSMOCG00000014615	Rbm28	58	55.300	Microtus_ochrogaster
ENSGACG00000012612	rbm28	75	64.877	ENSMMOG00000008600	rbm28	89	66.511	Mola_mola
ENSGACG00000012612	rbm28	100	49.870	ENSMODG00000015151	RBM28	57	54.382	Monodelphis_domestica
ENSGACG00000012612	rbm28	100	63.636	ENSMALG00000006419	rbm28	57	71.719	Monopterus_albus
ENSGACG00000012612	rbm28	100	49.801	MGP_CAROLIEiJ_G0028162	Rbm28	58	54.839	Mus_caroli
ENSGACG00000012612	rbm28	100	50.000	ENSMUSG00000029701	Rbm28	58	55.069	Mus_musculus
ENSGACG00000012612	rbm28	99	47.798	MGP_PahariEiJ_G0021920	Rbm28	58	56.221	Mus_pahari
ENSGACG00000012612	rbm28	100	49.867	MGP_SPRETEiJ_G0029162	Rbm28	58	54.911	Mus_spretus
ENSGACG00000012612	rbm28	100	47.705	ENSMPUG00000006511	RBM28	57	55.023	Mustela_putorius_furo
ENSGACG00000012612	rbm28	84	50.690	ENSMLUG00000002186	RBM28	57	54.483	Myotis_lucifugus
ENSGACG00000012612	rbm28	100	51.673	ENSNGAG00000006480	-	59	55.889	Nannospalax_galili
ENSGACG00000012612	rbm28	100	49.396	ENSNGAG00000017946	-	57	54.098	Nannospalax_galili
ENSGACG00000012612	rbm28	71	65.714	ENSNLEG00000012307	RBM28	75	65.714	Nomascus_leucogenys
ENSGACG00000012612	rbm28	81	78.571	ENSMEUG00000009611	RBM28	83	60.494	Notamacropus_eugenii
ENSGACG00000012612	rbm28	78	56.642	ENSODEG00000013217	-	82	57.881	Octodon_degus
ENSGACG00000012612	rbm28	100	50.067	ENSODEG00000003213	-	56	53.472	Octodon_degus
ENSGACG00000012612	rbm28	100	67.273	ENSONIG00000014924	rbm28	58	75.281	Oreochromis_niloticus
ENSGACG00000012612	rbm28	100	48.481	ENSOANG00000000815	-	58	49.438	Ornithorhynchus_anatinus
ENSGACG00000012612	rbm28	67	52.857	ENSOCUG00000003009	RBM28	57	55.963	Oryctolagus_cuniculus
ENSGACG00000012612	rbm28	99	63.793	ENSORLG00000009636	rbm28	58	69.037	Oryzias_latipes
ENSGACG00000012612	rbm28	75	68.874	ENSORLG00020002123	rbm28	86	68.481	Oryzias_latipes_hni
ENSGACG00000012612	rbm28	87	69.108	ENSORLG00015015030	rbm28	99	69.393	Oryzias_latipes_hsok
ENSGACG00000012612	rbm28	75	69.890	ENSOMEG00000007801	rbm28	59	70.179	Oryzias_melastigma
ENSGACG00000012612	rbm28	99	48.344	ENSOGAG00000006011	RBM28	75	62.857	Otolemur_garnettii
ENSGACG00000012612	rbm28	100	50.847	ENSOARG00000002547	RBM28	58	55.402	Ovis_aries
ENSGACG00000012612	rbm28	82	52.515	ENSPPAG00000041730	RBM28	75	65.714	Pan_paniscus
ENSGACG00000012612	rbm28	100	50.792	ENSPPRG00000004420	RBM28	77	65.714	Panthera_pardus
ENSGACG00000012612	rbm28	100	51.126	ENSPTIG00000008550	RBM28	77	65.714	Panthera_tigris_altaica
ENSGACG00000012612	rbm28	82	52.410	ENSPTRG00000019659	RBM28	75	65.714	Pan_troglodytes
ENSGACG00000012612	rbm28	99	47.436	ENSPANG00000022295	RBM28	76	61.538	Papio_anubis
ENSGACG00000012612	rbm28	99	54.685	ENSPKIG00000023453	rbm28	61	55.925	Paramormyrops_kingsleyae
ENSGACG00000012612	rbm28	100	59.695	ENSPMGG00000012840	rbm28	68	64.733	Periophthalmus_magnuspinnatus
ENSGACG00000012612	rbm28	83	51.793	ENSPEMG00000020673	Rbm28	60	55.889	Peromyscus_maniculatus_bairdii
ENSGACG00000012612	rbm28	61	40.470	ENSPMAG00000002948	-	99	40.992	Petromyzon_marinus
ENSGACG00000012612	rbm28	100	49.935	ENSPCIG00000012810	RBM28	58	54.060	Phascolarctos_cinereus
ENSGACG00000012612	rbm28	100	61.794	ENSPFOG00000018209	rbm28	58	70.203	Poecilia_formosa
ENSGACG00000012612	rbm28	98	61.383	ENSPLAG00000016078	rbm28	55	70.046	Poecilia_latipinna
ENSGACG00000012612	rbm28	100	61.857	ENSPMEG00000004292	rbm28	58	70.270	Poecilia_mexicana
ENSGACG00000012612	rbm28	74	69.595	ENSPREG00000014287	rbm28	72	70.115	Poecilia_reticulata
ENSGACG00000012612	rbm28	82	52.410	ENSPPYG00000017975	RBM28	57	55.862	Pongo_abelii
ENSGACG00000012612	rbm28	76	48.889	ENSPCAG00000008223	RBM28	81	49.444	Procavia_capensis
ENSGACG00000012612	rbm28	81	52.664	ENSPCOG00000016797	RBM28	75	65.714	Propithecus_coquereli
ENSGACG00000012612	rbm28	68	70.000	ENSPVAG00000005443	RBM28	69	62.564	Pteropus_vampyrus
ENSGACG00000012612	rbm28	100	67.710	ENSPNYG00000014003	rbm28	58	75.281	Pundamilia_nyererei
ENSGACG00000012612	rbm28	100	50.066	ENSRNOG00000005468	Rbm28	58	55.862	Rattus_norvegicus
ENSGACG00000012612	rbm28	100	48.336	ENSRBIG00000033990	RBM28	78	65.714	Rhinopithecus_bieti
ENSGACG00000012612	rbm28	82	52.104	ENSRROG00000040747	RBM28	75	65.714	Rhinopithecus_roxellana
ENSGACG00000012612	rbm28	95	45.146	ENSSBOG00000012308	RBM28	73	58.768	Saimiri_boliviensis_boliviensis
ENSGACG00000012612	rbm28	99	47.000	ENSSHAG00000017017	RBM28	58	54.177	Sarcophilus_harrisii
ENSGACG00000012612	rbm28	100	55.890	ENSSFOG00015001231	rbm28	60	60.739	Scleropages_formosus
ENSGACG00000012612	rbm28	75	66.740	ENSSMAG00000003885	rbm28	88	68.837	Scophthalmus_maximus
ENSGACG00000012612	rbm28	75	77.093	ENSSDUG00000014270	rbm28	94	75.052	Seriola_dumerili
ENSGACG00000012612	rbm28	100	66.121	ENSSLDG00000020099	rbm28	57	76.629	Seriola_lalandi_dorsalis
ENSGACG00000012612	rbm28	76	56.522	ENSSARG00000008303	RBM28	80	54.987	Sorex_araneus
ENSGACG00000012612	rbm28	69	66.176	ENSSPUG00000000838	RBM28	78	66.176	Sphenodon_punctatus
ENSGACG00000012612	rbm28	74	73.034	ENSSPAG00000023305	rbm28	61	73.708	Stegastes_partitus
ENSGACG00000012612	rbm28	100	50.591	ENSSSCG00000031847	RBM28	57	55.251	Sus_scrofa
ENSGACG00000012612	rbm28	100	61.501	ENSTRUG00000013311	rbm28	57	66.667	Takifugu_rubripes
ENSGACG00000012612	rbm28	99	61.436	ENSTNIG00000017962	rbm28	58	67.946	Tetraodon_nigroviridis
ENSGACG00000012612	rbm28	69	57.235	ENSTBEG00000012749	RBM28	71	55.389	Tupaia_belangeri
ENSGACG00000012612	rbm28	100	48.298	ENSUAMG00000006949	RBM28	82	60.204	Ursus_americanus
ENSGACG00000012612	rbm28	100	47.059	ENSUMAG00000005997	RBM28	57	56.322	Ursus_maritimus
ENSGACG00000012612	rbm28	100	42.240	ENSVPAG00000008304	RBM28	71	69.903	Vicugna_pacos
ENSGACG00000012612	rbm28	100	45.089	ENSVVUG00000007270	RBM28	58	54.943	Vulpes_vulpes
ENSGACG00000012612	rbm28	92	60.294	ENSXETG00000009271	rbm28	83	61.000	Xenopus_tropicalis
ENSGACG00000012612	rbm28	74	66.368	ENSXCOG00000020357	rbm28	90	66.366	Xiphophorus_couchianus
ENSGACG00000012612	rbm28	73	70.000	ENSXMAG00000004415	rbm28	58	70.023	Xiphophorus_maculatus