EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000013142 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 11320 bases
Position: chrgroupXX:15623294-15634613
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000017381	EST1	PF10374.9	1.5e-24	1	1
ENSGACP00000017381	EST1_DNA_bind	PF10373.9	3.1e-40	1	1
ENSGACP00000017381	PIN_4	PF13638.6	1.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000017415	-	3333	-	ENSGACP00000017381	1110 (aa)	-	G3PIF3

Gene Model

Click here to download ENSGACG00000013142's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000013142's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000013142	smg5	100	87.114	ENSAPOG00000019690	smg5	100	88.526	Acanthochromis_polyacanthus
ENSGACG00000013142	smg5	98	60.550	ENSAMEG00000014458	SMG5	100	59.266	Ailuropoda_melanoleuca
ENSGACG00000013142	smg5	100	81.441	ENSACIG00000001353	smg5	99	80.410	Amphilophus_citrinellus
ENSGACG00000013142	smg5	100	87.611	ENSAOCG00000019483	smg5	100	88.053	Amphiprion_ocellaris
ENSGACG00000013142	smg5	100	87.434	ENSAPEG00000022949	smg5	100	88.053	Amphiprion_percula
ENSGACG00000013142	smg5	100	86.779	ENSATEG00000005348	smg5	100	87.311	Anabas_testudineus
ENSGACG00000013142	smg5	98	63.110	ENSAPLG00000010263	SMG5	100	62.004	Anas_platyrhynchos
ENSGACG00000013142	smg5	50	53.321	ENSACAG00000009162	-	81	60.000	Anolis_carolinensis
ENSGACG00000013142	smg5	100	85.084	ENSACLG00000009311	smg5	100	85.790	Astatotilapia_calliptera
ENSGACG00000013142	smg5	100	78.292	ENSAMXG00000024616	smg5	100	78.044	Astyanax_mexicanus
ENSGACG00000013142	smg5	79	49.173	ENSBTAG00000021747	-	93	48.941	Bos_taurus
ENSGACG00000013142	smg5	99	61.226	ENSCAFG00000016839	SMG5	93	75.000	Canis_familiaris
ENSGACG00000013142	smg5	99	61.226	ENSCAFG00020006061	SMG5	93	75.000	Canis_lupus_dingo
ENSGACG00000013142	smg5	85	50.500	ENSCHIG00000006323	-	92	50.500	Capra_hircus
ENSGACG00000013142	smg5	99	61.754	ENSTSYG00000004099	SMG5	99	62.206	Carlito_syrichta
ENSGACG00000013142	smg5	95	47.826	ENSCAPG00000003631	SMG5	91	55.009	Cavia_aperea
ENSGACG00000013142	smg5	52	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSGACG00000013142	smg5	94	61.748	ENSCPBG00000025848	SMG5	100	61.474	Chrysemys_picta_bellii
ENSGACG00000013142	smg5	76	38.424	ENSCING00000008706	-	92	38.424	Ciona_intestinalis
ENSGACG00000013142	smg5	100	81.754	ENSCSEG00000014220	smg5	100	81.665	Cynoglossus_semilaevis
ENSGACG00000013142	smg5	100	71.532	ENSCVAG00000000529	smg5	99	71.071	Cyprinodon_variegatus
ENSGACG00000013142	smg5	100	76.195	ENSDARG00000041481	smg5	100	76.190	Danio_rerio
ENSGACG00000013142	smg5	72	38.904	ENSDNOG00000039862	-	85	38.904	Dasypus_novemcinctus
ENSGACG00000013142	smg5	74	84.466	ENSETEG00000010336	SMG5	81	84.466	Echinops_telfairi
ENSGACG00000013142	smg5	64	55.721	ENSEBUG00000003739	smg5	78	55.721	Eptatretus_burgeri
ENSGACG00000013142	smg5	67	77.809	ENSEEUG00000012690	SMG5	75	77.809	Erinaceus_europaeus
ENSGACG00000013142	smg5	100	79.329	ENSELUG00000012585	smg5	100	78.742	Esox_lucius
ENSGACG00000013142	smg5	58	63.945	ENSFALG00000001166	-	96	62.866	Ficedula_albicollis
ENSGACG00000013142	smg5	98	75.271	ENSFHEG00000013939	smg5	99	74.819	Fundulus_heteroclitus
ENSGACG00000013142	smg5	100	78.697	ENSGMOG00000007310	smg5	100	78.100	Gadus_morhua
ENSGACG00000013142	smg5	99	63.718	ENSGALG00000029918	-	99	62.956	Gallus_gallus
ENSGACG00000013142	smg5	93	88.644	ENSGAFG00000021691	smg5	100	88.644	Gambusia_affinis
ENSGACG00000013142	smg5	99	63.387	ENSGAGG00000016131	SMG5	99	62.148	Gopherus_agassizii
ENSGACG00000013142	smg5	100	85.159	ENSHBUG00000008654	smg5	100	86.131	Haplochromis_burtoni
ENSGACG00000013142	smg5	99	61.448	ENSHGLG00000019152	SMG5	99	61.392	Heterocephalus_glaber_female
ENSGACG00000013142	smg5	91	61.829	ENSHGLG00100015948	SMG5	99	61.668	Heterocephalus_glaber_male
ENSGACG00000013142	smg5	87	78.728	ENSHCOG00000010229	smg5	94	83.294	Hippocampus_comes
ENSGACG00000013142	smg5	100	75.993	ENSIPUG00000006624	Smg5	100	75.795	Ictalurus_punctatus
ENSGACG00000013142	smg5	100	84.996	ENSKMAG00000014586	smg5	100	85.450	Kryptolebias_marmoratus
ENSGACG00000013142	smg5	100	86.271	ENSLBEG00000002145	smg5	100	87.600	Labrus_bergylta
ENSGACG00000013142	smg5	99	57.487	ENSLACG00000010521	SMG5	99	56.723	Latimeria_chalumnae
ENSGACG00000013142	smg5	100	68.640	ENSLOCG00000008380	smg5	99	71.954	Lepisosteus_oculatus
ENSGACG00000013142	smg5	99	56.205	ENSMLEG00000041192	SMG5	91	66.900	Mandrillus_leucophaeus
ENSGACG00000013142	smg5	100	86.106	ENSMAMG00000010683	smg5	100	86.726	Mastacembelus_armatus
ENSGACG00000013142	smg5	100	77.877	ENSMZEG00005015815	smg5	99	78.145	Maylandia_zebra
ENSGACG00000013142	smg5	65	74.898	ENSMZEG00005016543	smg5	100	75.034	Maylandia_zebra
ENSGACG00000013142	smg5	100	82.275	ENSMMOG00000017199	smg5	100	82.099	Mola_mola
ENSGACG00000013142	smg5	77	34.000	ENSMODG00000004532	-	86	35.222	Monodelphis_domestica
ENSGACG00000013142	smg5	69	34.759	ENSMODG00000004735	-	86	34.759	Monodelphis_domestica
ENSGACG00000013142	smg5	74	34.715	ENSMODG00000004511	-	77	34.715	Monodelphis_domestica
ENSGACG00000013142	smg5	76	32.692	ENSMODG00000010675	-	91	32.692	Monodelphis_domestica
ENSGACG00000013142	smg5	100	85.297	ENSMALG00000010375	smg5	100	84.854	Monopterus_albus
ENSGACG00000013142	smg5	99	62.388	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSGACG00000013142	smg5	99	62.274	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSGACG00000013142	smg5	99	62.726	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSGACG00000013142	smg5	99	62.206	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSGACG00000013142	smg5	99	61.656	ENSMLUG00000008518	SMG5	99	60.936	Myotis_lucifugus
ENSGACG00000013142	smg5	99	62.220	ENSNGAG00000020706	Smg5	99	61.256	Nannospalax_galili
ENSGACG00000013142	smg5	83	46.712	ENSNGAG00000012101	-	94	46.712	Nannospalax_galili
ENSGACG00000013142	smg5	97	75.929	ENSNBRG00000004332	smg5	97	75.092	Neolamprologus_brichardi
ENSGACG00000013142	smg5	99	60.846	ENSMEUG00000012834	SMG5	99	59.196	Notamacropus_eugenii
ENSGACG00000013142	smg5	100	85.136	ENSONIG00000008632	smg5	100	86.131	Oreochromis_niloticus
ENSGACG00000013142	smg5	91	34.615	ENSOCUG00000023338	-	91	44.125	Oryctolagus_cuniculus
ENSGACG00000013142	smg5	100	83.199	ENSORLG00000016239	smg5	100	83.378	Oryzias_latipes
ENSGACG00000013142	smg5	100	83.289	ENSORLG00020013127	smg5	100	83.704	Oryzias_latipes_hni
ENSGACG00000013142	smg5	100	83.199	ENSORLG00015019014	smg5	100	83.437	Oryzias_latipes_hsok
ENSGACG00000013142	smg5	84	82.678	ENSOMEG00000021330	smg5	92	82.997	Oryzias_melastigma
ENSGACG00000013142	smg5	86	49.531	ENSOARG00000011963	-	94	49.531	Ovis_aries
ENSGACG00000013142	smg5	91	77.586	ENSPPRG00000011901	SMG5	93	76.145	Panthera_pardus
ENSGACG00000013142	smg5	90	75.309	ENSPTIG00000007892	SMG5	88	73.913	Panthera_tigris_altaica
ENSGACG00000013142	smg5	87	76.880	ENSPTRG00000049282	-	83	76.880	Pan_troglodytes
ENSGACG00000013142	smg5	100	75.556	ENSPKIG00000009402	smg5	100	74.669	Paramormyrops_kingsleyae
ENSGACG00000013142	smg5	98	63.853	ENSPSIG00000015198	SMG5	100	62.659	Pelodiscus_sinensis
ENSGACG00000013142	smg5	100	71.339	ENSPMGG00000010465	smg5	100	71.250	Periophthalmus_magnuspinnatus
ENSGACG00000013142	smg5	100	83.791	ENSPFOG00000010191	smg5	100	84.588	Poecilia_formosa
ENSGACG00000013142	smg5	100	83.614	ENSPLAG00000009332	smg5	100	84.588	Poecilia_latipinna
ENSGACG00000013142	smg5	100	83.968	ENSPMEG00000014105	smg5	100	84.765	Poecilia_mexicana
ENSGACG00000013142	smg5	100	82.905	ENSPREG00000017713	smg5	100	84.677	Poecilia_reticulata
ENSGACG00000013142	smg5	99	59.640	ENSPCOG00000004741	SMG5	99	60.647	Propithecus_coquereli
ENSGACG00000013142	smg5	99	55.747	ENSPVAG00000016748	SMG5	91	64.637	Pteropus_vampyrus
ENSGACG00000013142	smg5	100	84.507	ENSPNYG00000013397	smg5	100	85.739	Pundamilia_nyererei
ENSGACG00000013142	smg5	100	77.482	ENSPNAG00000028363	smg5	100	76.507	Pygocentrus_nattereri
ENSGACG00000013142	smg5	50	35.751	ENSSHAG00000000935	-	81	35.751	Sarcophilus_harrisii
ENSGACG00000013142	smg5	71	40.194	ENSSHAG00000009572	-	79	40.436	Sarcophilus_harrisii
ENSGACG00000013142	smg5	69	35.751	ENSSHAG00000000561	-	87	35.751	Sarcophilus_harrisii
ENSGACG00000013142	smg5	100	74.802	ENSSFOG00015024175	smg5	100	74.824	Scleropages_formosus
ENSGACG00000013142	smg5	100	85.991	ENSSMAG00000013059	smg5	100	86.914	Scophthalmus_maximus
ENSGACG00000013142	smg5	100	86.972	ENSSDUG00000007122	smg5	100	87.852	Seriola_dumerili
ENSGACG00000013142	smg5	100	86.849	ENSSLDG00000011418	smg5	100	87.908	Seriola_lalandi_dorsalis
ENSGACG00000013142	smg5	85	69.039	ENSSARG00000012484	SMG5	94	69.039	Sorex_araneus
ENSGACG00000013142	smg5	94	62.150	ENSSPUG00000002260	SMG5	100	61.674	Sphenodon_punctatus
ENSGACG00000013142	smg5	100	85.626	ENSSPAG00000014266	smg5	100	87.390	Stegastes_partitus
ENSGACG00000013142	smg5	99	58.056	ENSSSCG00000006490	-	92	76.498	Sus_scrofa
ENSGACG00000013142	smg5	99	48.378	ENSSSCG00000039308	-	99	48.108	Sus_scrofa
ENSGACG00000013142	smg5	99	63.456	ENSTGUG00000003748	-	99	62.399	Taeniopygia_guttata
ENSGACG00000013142	smg5	100	79.894	ENSTRUG00000012580	smg5	100	79.982	Takifugu_rubripes
ENSGACG00000013142	smg5	100	79.350	ENSTNIG00000010303	smg5	100	79.701	Tetraodon_nigroviridis
ENSGACG00000013142	smg5	53	83.744	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSGACG00000013142	smg5	93	71.698	ENSUMAG00000018041	SMG5	93	74.631	Ursus_maritimus
ENSGACG00000013142	smg5	55	71.287	ENSVPAG00000009446	SMG5	92	67.237	Vicugna_pacos
ENSGACG00000013142	smg5	79	54.214	ENSXETG00000033791	SMG5	95	55.976	Xenopus_tropicalis
ENSGACG00000013142	smg5	86	89.730	ENSXCOG00000004379	smg5	99	90.659	Xiphophorus_couchianus
ENSGACG00000013142	smg5	100	82.682	ENSXMAG00000013499	smg5	100	84.014	Xiphophorus_maculatus