EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000013401 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171927
Alias: -
Full Name: zgc:171927
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 3100 bases
Position: chrgroupI:17486314-17489413
Accession: ZDB-GENE-070822-21
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000017719	MMR_HSR1	PF01926.23	5.1e-05	1	1
ENSGACP00000017714	MMR_HSR1	PF01926.23	6e-05	1	1
ENSGACP00000017724	MMR_HSR1	PF01926.23	6.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000017759	-	666	-	ENSGACP00000017724	221 (aa)	-	G3PJE5
ENSGACT00000017749	-	654	-	ENSGACP00000017714	217 (aa)	-	G3PJD5
ENSGACT00000017754	-	594	-	ENSGACP00000017719	198 (aa)	-	G3PJE0

Gene Model

Click here to download ENSGACG00000013401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000013401's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000013401	zgc:171927	86	43.275	ENSGACG00000006162	-	80	41.808
ENSGACG00000013401	zgc:171927	81	40.964	ENSGACG00000020514	rab34b	63	40.964
ENSGACG00000013401	zgc:171927	94	35.874	ENSGACG00000011190	rab34a	77	35.874
ENSGACG00000013401	zgc:171927	63	30.709	ENSGACG00000000500	-	64	30.709
ENSGACG00000013401	zgc:171927	96	35.586	ENSGACG00000011607	rab32b	93	34.956
ENSGACG00000013401	zgc:171927	87	33.333	ENSGACG00000016680	rheb	92	33.143
ENSGACG00000013401	zgc:171927	88	39.429	ENSGACG00000017153	rab41	82	38.889
ENSGACG00000013401	zgc:171927	88	44.318	ENSGACG00000016164	rab4a	82	43.575
ENSGACG00000013401	zgc:171927	88	39.655	ENSGACG00000013721	rab6bb	80	40.230
ENSGACG00000013401	zgc:171927	88	32.961	ENSGACG00000019134	si:cabz01085950.1	88	32.961
ENSGACG00000013401	zgc:171927	97	44.550	ENSGACG00000013297	-	95	44.550
ENSGACG00000013401	zgc:171927	85	32.941	ENSGACG00000004844	rras	96	32.967
ENSGACG00000013401	zgc:171927	82	38.037	ENSGACG00000011661	kras	83	38.037
ENSGACG00000013401	zgc:171927	83	38.462	ENSGACG00000009647	RAB7A	85	37.500
ENSGACG00000013401	zgc:171927	96	35.644	ENSGACG00000003726	rab6ba	94	35.644
ENSGACG00000013401	zgc:171927	54	30.159	ENSGACG00000012267	arl8ba	62	30.159
ENSGACG00000013401	zgc:171927	78	37.107	ENSGACG00000003972	rab9a	78	37.107
ENSGACG00000013401	zgc:171927	85	48.521	ENSGACG00000014905	rab2a	79	48.521
ENSGACG00000013401	zgc:171927	97	45.498	ENSGACG00000013259	rab11al	96	45.498
ENSGACG00000013401	zgc:171927	82	44.785	ENSGACG00000008659	rab5c	78	43.860
ENSGACG00000013401	zgc:171927	83	34.731	ENSGACG00000007818	si:ch73-116o1.2	84	34.524
ENSGACG00000013401	zgc:171927	82	41.916	ENSGACG00000018745	rab33a	71	41.916
ENSGACG00000013401	zgc:171927	82	36.747	ENSGACG00000018291	rab9b	82	36.747
ENSGACG00000013401	zgc:171927	59	30.645	ENSGACG00000000273	arl8a	62	30.645
ENSGACG00000013401	zgc:171927	96	38.342	ENSGACG00000005608	rab22a	97	38.342
ENSGACG00000013401	zgc:171927	80	38.415	ENSGACG00000014678	rab36	61	38.415
ENSGACG00000013401	zgc:171927	64	34.848	ENSGACG00000003527	rab20	55	34.848
ENSGACG00000013401	zgc:171927	82	47.239	ENSGACG00000004997	rab5aa	75	47.239
ENSGACG00000013401	zgc:171927	97	30.348	ENSGACG00000010473	RAB29	97	30.348
ENSGACG00000013401	zgc:171927	87	49.143	ENSGACG00000005979	RAB15	85	49.143
ENSGACG00000013401	zgc:171927	99	39.901	ENSGACG00000001950	RAB39B	94	39.901
ENSGACG00000013401	zgc:171927	100	74.877	ENSGACG00000003864	rab1ab	100	74.877
ENSGACG00000013401	zgc:171927	82	64.198	ENSGACG00000013548	rab35b	80	64.198
ENSGACG00000013401	zgc:171927	83	45.455	ENSGACG00000016799	-	96	45.455
ENSGACG00000013401	zgc:171927	80	39.752	ENSGACG00000005397	si:ch211-247i17.1	95	39.053
ENSGACG00000013401	zgc:171927	62	31.250	ENSGACG00000000497	-	62	31.250
ENSGACG00000013401	zgc:171927	81	40.373	ENSGACG00000019767	-	84	40.237
ENSGACG00000013401	zgc:171927	87	31.609	ENSGACG00000015645	rras2	92	32.624
ENSGACG00000013401	zgc:171927	96	36.816	ENSGACG00000020356	rab6a	93	36.816
ENSGACG00000013401	zgc:171927	100	51.010	ENSGACG00000011925	rab13	97	52.821
ENSGACG00000013401	zgc:171927	91	47.872	ENSGACG00000001694	rab18a	87	48.925
ENSGACG00000013401	zgc:171927	81	50.000	ENSGACG00000016395	rab18b	84	48.588
ENSGACG00000013401	zgc:171927	79	35.256	ENSGACG00000006151	rab23	75	33.333
ENSGACG00000013401	zgc:171927	62	33.065	ENSGACG00000003710	arl4d	62	33.065
ENSGACG00000013401	zgc:171927	85	50.296	ENSGACG00000007722	rab15	92	53.947
ENSGACG00000013401	zgc:171927	80	46.341	ENSGACG00000001725	zgc:101559	73	45.562
ENSGACG00000013401	zgc:171927	96	34.555	ENSGACG00000011340	hrasb	94	34.555
ENSGACG00000013401	zgc:171927	81	33.742	ENSGACG00000012474	rabl2	71	34.146
ENSGACG00000013401	zgc:171927	99	42.466	ENSGACG00000016639	rab12	85	42.466
ENSGACG00000013401	zgc:171927	81	39.752	ENSGACG00000013611	-	81	39.394
ENSGACG00000013401	zgc:171927	78	37.107	ENSGACG00000014578	RAB9A	80	37.107
ENSGACG00000013401	zgc:171927	86	32.164	ENSGACG00000000729	rhebl1	94	32.203
ENSGACG00000013401	zgc:171927	86	45.349	ENSGACG00000004965	rab25a	82	45.087
ENSGACG00000013401	zgc:171927	85	45.349	ENSGACG00000019540	rab33ba	80	44.571
ENSGACG00000013401	zgc:171927	98	44.545	ENSGACG00000018847	-	96	44.545
ENSGACG00000013401	zgc:171927	97	45.498	ENSGACG00000015479	rab11bb	96	45.498
ENSGACG00000013401	zgc:171927	99	40.594	ENSGACG00000020437	-	95	40.594
ENSGACG00000013401	zgc:171927	98	47.692	ENSGACG00000012006	rab30	95	47.692
ENSGACG00000013401	zgc:171927	87	48.256	ENSGACG00000013249	rab25b	82	48.256
ENSGACG00000013401	zgc:171927	87	37.500	ENSGACG00000000807	-	93	35.938
ENSGACG00000013401	zgc:171927	89	58.757	ENSGACG00000014915	si:dkey-16l2.16	88	54.545
ENSGACG00000013401	zgc:171927	100	74.000	ENSGACG00000000789	rab1ba	98	74.000
ENSGACG00000013401	zgc:171927	100	74.257	ENSGACG00000019642	-	99	74.257

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000013401	zgc:171927	99	94.393	ENSAPOG00000004980	-	100	94.393	Acanthochromis_polyacanthus
ENSGACG00000013401	zgc:171927	99	92.991	ENSACIG00000009006	zgc:171927	100	92.991	Amphilophus_citrinellus
ENSGACG00000013401	zgc:171927	99	91.589	ENSAOCG00000024149	-	100	91.589	Amphiprion_ocellaris
ENSGACG00000013401	zgc:171927	76	87.742	ENSAOCG00000013808	-	98	94.531	Amphiprion_ocellaris
ENSGACG00000013401	zgc:171927	99	92.056	ENSAPEG00000022171	zgc:171927	99	92.056	Amphiprion_percula
ENSGACG00000013401	zgc:171927	99	92.991	ENSATEG00000003430	zgc:171927	100	92.991	Anabas_testudineus
ENSGACG00000013401	zgc:171927	99	92.523	ENSACLG00000013734	-	100	92.523	Astatotilapia_calliptera
ENSGACG00000013401	zgc:171927	99	78.605	ENSAMXG00000039486	zgc:171927	100	78.605	Astyanax_mexicanus
ENSGACG00000013401	zgc:171927	99	89.252	ENSCSEG00000014416	zgc:171927	100	89.252	Cynoglossus_semilaevis
ENSGACG00000013401	zgc:171927	99	90.654	ENSCVAG00000009222	zgc:171927	100	90.654	Cyprinodon_variegatus
ENSGACG00000013401	zgc:171927	99	78.605	ENSDARG00000033056	zgc:171927	100	78.605	Danio_rerio
ENSGACG00000013401	zgc:171927	89	87.500	ENSELUG00000011680	zgc:171927	99	79.070	Esox_lucius
ENSGACG00000013401	zgc:171927	99	91.589	ENSFHEG00000022176	zgc:171927	100	91.589	Fundulus_heteroclitus
ENSGACG00000013401	zgc:171927	99	79.091	ENSGMOG00000004979	-	100	79.091	Gadus_morhua
ENSGACG00000013401	zgc:171927	100	86.425	ENSGAFG00000015702	zgc:171927	88	86.425	Gambusia_affinis
ENSGACG00000013401	zgc:171927	99	92.523	ENSHBUG00000002397	-	100	92.523	Haplochromis_burtoni
ENSGACG00000013401	zgc:171927	99	91.589	ENSKMAG00000009856	zgc:171927	100	91.589	Kryptolebias_marmoratus
ENSGACG00000013401	zgc:171927	99	91.121	ENSLBEG00000005791	-	100	91.121	Labrus_bergylta
ENSGACG00000013401	zgc:171927	96	90.431	ENSLBEG00000027226	-	93	89.450	Labrus_bergylta
ENSGACG00000013401	zgc:171927	96	72.857	ENSLOCG00000014692	zgc:171927	97	72.986	Lepisosteus_oculatus
ENSGACG00000013401	zgc:171927	99	91.589	ENSMAMG00000020135	zgc:171927	100	91.589	Mastacembelus_armatus
ENSGACG00000013401	zgc:171927	99	92.523	ENSMZEG00005024685	-	100	92.523	Maylandia_zebra
ENSGACG00000013401	zgc:171927	99	87.383	ENSMMOG00000009833	-	100	87.383	Mola_mola
ENSGACG00000013401	zgc:171927	99	91.121	ENSMALG00000021129	zgc:171927	100	91.121	Monopterus_albus
ENSGACG00000013401	zgc:171927	99	92.056	ENSNBRG00000006202	zgc:171927	100	92.056	Neolamprologus_brichardi
ENSGACG00000013401	zgc:171927	99	88.785	ENSORLG00000000602	zgc:171927	100	88.785	Oryzias_latipes
ENSGACG00000013401	zgc:171927	99	88.785	ENSORLG00020021071	zgc:171927	100	88.785	Oryzias_latipes_hni
ENSGACG00000013401	zgc:171927	99	89.252	ENSORLG00015010098	zgc:171927	100	89.252	Oryzias_latipes_hsok
ENSGACG00000013401	zgc:171927	99	90.654	ENSOMEG00000020594	zgc:171927	100	90.654	Oryzias_melastigma
ENSGACG00000013401	zgc:171927	100	88.940	ENSPFOG00000013810	zgc:171927	100	88.940	Poecilia_formosa
ENSGACG00000013401	zgc:171927	99	88.785	ENSPLAG00000005869	zgc:171927	100	88.785	Poecilia_latipinna
ENSGACG00000013401	zgc:171927	99	89.720	ENSPMEG00000022350	zgc:171927	100	89.720	Poecilia_mexicana
ENSGACG00000013401	zgc:171927	99	90.654	ENSPREG00000017517	zgc:171927	100	90.654	Poecilia_reticulata
ENSGACG00000013401	zgc:171927	99	92.523	ENSPNYG00000007520	-	100	92.523	Pundamilia_nyererei
ENSGACG00000013401	zgc:171927	99	79.535	ENSPNAG00000029574	zgc:171927	100	79.535	Pygocentrus_nattereri
ENSGACG00000013401	zgc:171927	99	77.209	ENSSFOG00015005464	zgc:171927	99	77.209	Scleropages_formosus
ENSGACG00000013401	zgc:171927	99	87.383	ENSSMAG00000004416	-	100	87.383	Scophthalmus_maximus
ENSGACG00000013401	zgc:171927	99	94.860	ENSSDUG00000004445	zgc:171927	100	94.860	Seriola_dumerili
ENSGACG00000013401	zgc:171927	99	94.860	ENSSLDG00000018024	zgc:171927	100	94.860	Seriola_lalandi_dorsalis
ENSGACG00000013401	zgc:171927	99	94.393	ENSSPAG00000013533	zgc:171927	100	94.393	Stegastes_partitus
ENSGACG00000013401	zgc:171927	99	91.121	ENSXCOG00000010695	zgc:171927	100	91.121	Xiphophorus_couchianus
ENSGACG00000013401	zgc:171927	99	91.121	ENSXMAG00000004683	zgc:171927	100	91.121	Xiphophorus_maculatus