EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000014328 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 20123 bases
Position: chrgroupIII:3883427-3903549
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000018914	XRN_N	PF03159.18	5.4e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000018952	-	5163	-	ENSGACP00000018914	1720 (aa)	-	G3PMT1

Gene Model

Click here to download ENSGACG00000014328's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000014328's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000014328	xrn1	100	60.068	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSGACG00000014328	xrn1	94	88.925	ENSAPOG00000000622	xrn1	99	88.843	Acanthochromis_polyacanthus
ENSGACG00000014328	xrn1	96	61.721	ENSAMEG00000012538	XRN1	100	60.418	Ailuropoda_melanoleuca
ENSGACG00000014328	xrn1	94	88.033	ENSACIG00000001057	xrn1	99	88.033	Amphilophus_citrinellus
ENSGACG00000014328	xrn1	100	79.795	ENSAOCG00000014097	xrn1	100	79.681	Amphiprion_ocellaris
ENSGACG00000014328	xrn1	100	80.598	ENSAPEG00000006620	xrn1	98	89.022	Amphiprion_percula
ENSGACG00000014328	xrn1	95	84.889	ENSATEG00000009752	xrn1	99	84.889	Anabas_testudineus
ENSGACG00000014328	xrn1	99	60.389	ENSAPLG00000004905	XRN1	100	60.034	Anas_platyrhynchos
ENSGACG00000014328	xrn1	100	58.379	ENSACAG00000004985	XRN1	100	57.930	Anolis_carolinensis
ENSGACG00000014328	xrn1	100	60.354	ENSANAG00000029013	XRN1	99	71.730	Aotus_nancymaae
ENSGACG00000014328	xrn1	100	77.201	ENSACLG00000004806	xrn1	99	77.257	Astatotilapia_calliptera
ENSGACG00000014328	xrn1	100	66.177	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSGACG00000014328	xrn1	100	59.541	ENSBTAG00000011524	XRN1	100	59.091	Bos_taurus
ENSGACG00000014328	xrn1	70	36.890	WBGene00012730	xrn-1	75	61.394	Caenorhabditis_elegans
ENSGACG00000014328	xrn1	100	60.455	ENSCJAG00000001872	XRN1	99	61.273	Callithrix_jacchus
ENSGACG00000014328	xrn1	95	62.217	ENSCAFG00000007783	XRN1	100	60.532	Canis_familiaris
ENSGACG00000014328	xrn1	95	62.217	ENSCAFG00020009120	XRN1	99	74.725	Canis_lupus_dingo
ENSGACG00000014328	xrn1	99	60.363	ENSCHIG00000019192	XRN1	99	60.159	Capra_hircus
ENSGACG00000014328	xrn1	100	60.261	ENSTSYG00000002705	XRN1	100	59.694	Carlito_syrichta
ENSGACG00000014328	xrn1	100	60.297	ENSCCAG00000034800	XRN1	99	76.667	Cebus_capucinus
ENSGACG00000014328	xrn1	96	61.452	ENSCATG00000041794	XRN1	100	59.795	Cercocebus_atys
ENSGACG00000014328	xrn1	100	60.511	ENSCLAG00000001451	XRN1	99	76.498	Chinchilla_lanigera
ENSGACG00000014328	xrn1	96	61.319	ENSCSAG00000011265	XRN1	100	59.648	Chlorocebus_sabaeus
ENSGACG00000014328	xrn1	51	94.805	ENSCHOG00000013961	-	53	95.833	Choloepus_hoffmanni
ENSGACG00000014328	xrn1	67	49.652	ENSCSAVG00000008584	-	91	49.552	Ciona_savignyi
ENSGACG00000014328	xrn1	96	61.598	ENSCANG00000037495	XRN1	99	76.667	Colobus_angolensis_palliatus
ENSGACG00000014328	xrn1	100	60.113	ENSCGRG00001019411	Xrn1	99	77.143	Cricetulus_griseus_chok1gshd
ENSGACG00000014328	xrn1	100	60.113	ENSCGRG00000012464	Xrn1	99	77.143	Cricetulus_griseus_crigri
ENSGACG00000014328	xrn1	100	69.487	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSGACG00000014328	xrn1	66	85.234	ENSCVAG00000013089	xrn1	99	85.234	Cyprinodon_variegatus
ENSGACG00000014328	xrn1	100	68.261	ENSDARG00000091652	xrn1	98	80.842	Danio_rerio
ENSGACG00000014328	xrn1	100	60.239	ENSDORG00000013833	Xrn1	100	60.183	Dipodomys_ordii
ENSGACG00000014328	xrn1	69	40.722	FBgn0020261	pcm	72	40.741	Drosophila_melanogaster
ENSGACG00000014328	xrn1	86	68.468	ENSETEG00000003978	XRN1	88	68.595	Echinops_telfairi
ENSGACG00000014328	xrn1	96	62.153	ENSEASG00005002687	XRN1	99	76.498	Equus_asinus_asinus
ENSGACG00000014328	xrn1	96	61.425	ENSECAG00000008301	XRN1	100	59.898	Equus_caballus
ENSGACG00000014328	xrn1	86	64.516	ENSEEUG00000011323	XRN1	87	64.516	Erinaceus_europaeus
ENSGACG00000014328	xrn1	100	70.482	ENSELUG00000000169	xrn1	100	70.328	Esox_lucius
ENSGACG00000014328	xrn1	100	56.657	ENSFCAG00000027589	XRN1	99	78.091	Felis_catus
ENSGACG00000014328	xrn1	100	59.280	ENSFALG00000007021	XRN1	100	59.124	Ficedula_albicollis
ENSGACG00000014328	xrn1	100	60.238	ENSFDAG00000020494	XRN1	99	76.498	Fukomys_damarensis
ENSGACG00000014328	xrn1	88	74.713	ENSGMOG00000006396	xrn1	88	75.452	Gadus_morhua
ENSGACG00000014328	xrn1	100	59.590	ENSGALG00000002706	XRN1	100	59.290	Gallus_gallus
ENSGACG00000014328	xrn1	94	61.993	ENSGAGG00000017535	XRN1	99	61.874	Gopherus_agassizii
ENSGACG00000014328	xrn1	100	60.251	ENSGGOG00000008047	XRN1	100	59.909	Gorilla_gorilla
ENSGACG00000014328	xrn1	95	84.585	ENSHBUG00000005908	xrn1	99	84.585	Haplochromis_burtoni
ENSGACG00000014328	xrn1	100	61.007	ENSHGLG00000014476	XRN1	99	76.498	Heterocephalus_glaber_female
ENSGACG00000014328	xrn1	100	61.007	ENSHGLG00100015130	XRN1	99	76.498	Heterocephalus_glaber_male
ENSGACG00000014328	xrn1	94	82.595	ENSHCOG00000014062	xrn1	99	82.595	Hippocampus_comes
ENSGACG00000014328	xrn1	100	65.509	ENSIPUG00000015229	xrn1	100	67.260	Ictalurus_punctatus
ENSGACG00000014328	xrn1	100	60.350	ENSSTOG00000013552	XRN1	99	76.341	Ictidomys_tridecemlineatus
ENSGACG00000014328	xrn1	98	59.422	ENSJJAG00000010863	Xrn1	99	75.534	Jaculus_jaculus
ENSGACG00000014328	xrn1	100	73.110	ENSKMAG00000021356	xrn1	95	83.613	Kryptolebias_marmoratus
ENSGACG00000014328	xrn1	95	85.412	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSGACG00000014328	xrn1	100	60.724	ENSLACG00000009020	XRN1	100	60.838	Latimeria_chalumnae
ENSGACG00000014328	xrn1	100	64.799	ENSLOCG00000007944	xrn1	100	64.391	Lepisosteus_oculatus
ENSGACG00000014328	xrn1	61	71.846	ENSLAFG00000015426	XRN1	99	71.922	Loxodonta_africana
ENSGACG00000014328	xrn1	96	61.392	ENSMFAG00000032599	XRN1	100	59.795	Macaca_fascicularis
ENSGACG00000014328	xrn1	96	61.452	ENSMMUG00000014038	XRN1	100	59.795	Macaca_mulatta
ENSGACG00000014328	xrn1	96	61.452	ENSMNEG00000034217	XRN1	100	59.852	Macaca_nemestrina
ENSGACG00000014328	xrn1	98	80.144	ENSMAMG00000013219	xrn1	99	81.121	Mastacembelus_armatus
ENSGACG00000014328	xrn1	100	77.144	ENSMZEG00005015099	xrn1	99	77.201	Maylandia_zebra
ENSGACG00000014328	xrn1	99	59.008	ENSMGAG00000006333	XRN1	100	58.699	Meleagris_gallopavo
ENSGACG00000014328	xrn1	100	60.102	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSGACG00000014328	xrn1	56	76.424	ENSMOCG00000008665	Xrn1	99	76.424	Microtus_ochrogaster
ENSGACG00000014328	xrn1	100	59.213	ENSMODG00000021236	XRN1	100	58.992	Monodelphis_domestica
ENSGACG00000014328	xrn1	100	72.898	ENSMALG00000004098	xrn1	100	73.750	Monopterus_albus
ENSGACG00000014328	xrn1	96	76.535	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSGACG00000014328	xrn1	100	60.469	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSGACG00000014328	xrn1	100	60.775	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSGACG00000014328	xrn1	100	60.412	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSGACG00000014328	xrn1	96	61.475	ENSMPUG00000012040	XRN1	100	60.112	Mustela_putorius_furo
ENSGACG00000014328	xrn1	100	59.580	ENSMLUG00000016885	XRN1	100	58.924	Myotis_lucifugus
ENSGACG00000014328	xrn1	56	72.370	ENSNGAG00000023964	Xrn1	99	71.900	Nannospalax_galili
ENSGACG00000014328	xrn1	96	61.333	ENSNLEG00000004726	XRN1	100	59.737	Nomascus_leucogenys
ENSGACG00000014328	xrn1	62	96.907	ENSMEUG00000014473	-	64	97.087	Notamacropus_eugenii
ENSGACG00000014328	xrn1	72	65.452	ENSOPRG00000007337	-	63	65.293	Ochotona_princeps
ENSGACG00000014328	xrn1	100	78.681	ENSONIG00000016673	xrn1	99	80.218	Oreochromis_niloticus
ENSGACG00000014328	xrn1	92	56.767	ENSOANG00000006735	XRN1	100	56.783	Ornithorhynchus_anatinus
ENSGACG00000014328	xrn1	100	60.135	ENSOCUG00000001861	XRN1	100	59.955	Oryctolagus_cuniculus
ENSGACG00000014328	xrn1	100	74.844	ENSORLG00000013005	xrn1	98	74.674	Oryzias_latipes
ENSGACG00000014328	xrn1	95	84.054	ENSORLG00020005559	xrn1	100	74.391	Oryzias_latipes_hni
ENSGACG00000014328	xrn1	100	72.418	ENSORLG00015022523	xrn1	97	83.974	Oryzias_latipes_hsok
ENSGACG00000014328	xrn1	92	86.535	ENSOMEG00000015397	xrn1	99	86.535	Oryzias_melastigma
ENSGACG00000014328	xrn1	96	58.882	ENSOGAG00000000170	XRN1	100	57.425	Otolemur_garnettii
ENSGACG00000014328	xrn1	99	59.910	ENSOARG00000006343	XRN1	99	59.393	Ovis_aries
ENSGACG00000014328	xrn1	100	60.216	ENSPPAG00000010180	XRN1	100	59.863	Pan_paniscus
ENSGACG00000014328	xrn1	100	60.113	ENSPPRG00000007125	XRN1	100	60.011	Panthera_pardus
ENSGACG00000014328	xrn1	100	60.170	ENSPTIG00000021081	XRN1	100	60.068	Panthera_tigris_altaica
ENSGACG00000014328	xrn1	100	60.216	ENSPTRG00000015482	XRN1	100	59.863	Pan_troglodytes
ENSGACG00000014328	xrn1	100	60.011	ENSPANG00000010638	XRN1	100	59.738	Papio_anubis
ENSGACG00000014328	xrn1	100	60.806	ENSPSIG00000018050	XRN1	100	60.740	Pelodiscus_sinensis
ENSGACG00000014328	xrn1	57	85.510	ENSPMGG00000002648	xrn1	99	85.510	Periophthalmus_magnuspinnatus
ENSGACG00000014328	xrn1	56	76.582	ENSPEMG00000020610	Xrn1	99	76.984	Peromyscus_maniculatus_bairdii
ENSGACG00000014328	xrn1	64	48.538	ENSPMAG00000002975	xrn1	90	76.149	Petromyzon_marinus
ENSGACG00000014328	xrn1	97	70.110	ENSPCIG00000028735	XRN1	99	76.312	Phascolarctos_cinereus
ENSGACG00000014328	xrn1	91	78.280	ENSPFOG00000013932	xrn1	99	78.719	Poecilia_formosa
ENSGACG00000014328	xrn1	91	78.778	ENSPLAG00000021653	xrn1	99	78.904	Poecilia_latipinna
ENSGACG00000014328	xrn1	89	78.714	ENSPMEG00000003076	xrn1	95	79.035	Poecilia_mexicana
ENSGACG00000014328	xrn1	100	75.510	ENSPREG00000021147	xrn1	100	76.161	Poecilia_reticulata
ENSGACG00000014328	xrn1	100	59.875	ENSPPYG00000014172	XRN1	100	59.533	Pongo_abelii
ENSGACG00000014328	xrn1	78	77.495	ENSPCAG00000005638	XRN1	92	65.874	Procavia_capensis
ENSGACG00000014328	xrn1	100	60.034	ENSPCOG00000013089	XRN1	99	76.349	Propithecus_coquereli
ENSGACG00000014328	xrn1	82	84.971	ENSPVAG00000016265	XRN1	87	84.971	Pteropus_vampyrus
ENSGACG00000014328	xrn1	100	76.827	ENSPNYG00000010570	xrn1	99	85.410	Pundamilia_nyererei
ENSGACG00000014328	xrn1	100	65.445	ENSPNAG00000023531	xrn1	100	65.977	Pygocentrus_nattereri
ENSGACG00000014328	xrn1	100	59.921	ENSRNOG00000042951	Xrn1	100	60.262	Rattus_norvegicus
ENSGACG00000014328	xrn1	96	61.313	ENSRBIG00000041227	XRN1	100	59.656	Rhinopithecus_bieti
ENSGACG00000014328	xrn1	68	33.307	YGL173C	XRN1	81	32.683	Saccharomyces_cerevisiae
ENSGACG00000014328	xrn1	100	60.080	ENSSBOG00000029561	XRN1	100	59.932	Saimiri_boliviensis_boliviensis
ENSGACG00000014328	xrn1	99	59.323	ENSSHAG00000016207	XRN1	100	59.211	Sarcophilus_harrisii
ENSGACG00000014328	xrn1	100	66.340	ENSSFOG00015024211	xrn1	100	65.879	Scleropages_formosus
ENSGACG00000014328	xrn1	94	85.547	ENSSMAG00000016534	xrn1	99	85.547	Scophthalmus_maximus
ENSGACG00000014328	xrn1	89	89.828	ENSSDUG00000010306	xrn1	97	89.828	Seriola_dumerili
ENSGACG00000014328	xrn1	93	89.110	ENSSLDG00000021543	xrn1	99	89.110	Seriola_lalandi_dorsalis
ENSGACG00000014328	xrn1	60	66.018	ENSSARG00000007741	-	75	66.254	Sorex_araneus
ENSGACG00000014328	xrn1	100	60.692	ENSTGUG00000008498	XRN1	100	60.716	Taeniopygia_guttata
ENSGACG00000014328	xrn1	95	82.129	ENSTRUG00000004895	xrn1	96	85.897	Takifugu_rubripes
ENSGACG00000014328	xrn1	100	71.820	ENSTNIG00000017615	xrn1	100	71.673	Tetraodon_nigroviridis
ENSGACG00000014328	xrn1	75	83.602	ENSTBEG00000003256	XRN1	87	70.927	Tupaia_belangeri
ENSGACG00000014328	xrn1	100	56.419	ENSTTRG00000012914	XRN1	100	56.225	Tursiops_truncatus
ENSGACG00000014328	xrn1	100	58.940	ENSUAMG00000001608	XRN1	99	73.028	Ursus_americanus
ENSGACG00000014328	xrn1	100	60.237	ENSUMAG00000013625	XRN1	100	60.305	Ursus_maritimus
ENSGACG00000014328	xrn1	100	57.889	ENSVPAG00000004690	XRN1	100	57.957	Vicugna_pacos
ENSGACG00000014328	xrn1	96	61.953	ENSVVUG00000024461	XRN1	99	77.234	Vulpes_vulpes
ENSGACG00000014328	xrn1	100	60.045	ENSXETG00000000619	xrn1	99	84.777	Xenopus_tropicalis
ENSGACG00000014328	xrn1	100	74.368	ENSXCOG00000007917	xrn1	100	74.425	Xiphophorus_couchianus
ENSGACG00000014328	xrn1	90	85.070	ENSXMAG00000018320	xrn1	98	85.070	Xiphophorus_maculatus