EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000014901 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 7322 bases
Position: chrgroupI:23187497-23194818
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000019670	RRM_1	PF00076.22	2.6e-31	1	2
ENSGACP00000019670	RRM_1	PF00076.22	2.6e-31	2	2
ENSGACP00000019668	RRM_1	PF00076.22	7.6e-31	1	2
ENSGACP00000019668	RRM_1	PF00076.22	7.6e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000019708	-	1071	-	ENSGACP00000019670	357 (aa)	-	G3PPY5
ENSGACT00000019706	-	1518	-	ENSGACP00000019668	505 (aa)	-	G3PPY3

Gene Model

Click here to download ENSGACG00000014901's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000014901's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000014901	pspc1	99	55.014	ENSGACG00000002034	sfpq	66	52.900
ENSGACG00000014901	pspc1	87	61.935	ENSGACG00000011824	nono	89	56.888

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000014901	pspc1	93	73.433	ENSG00000121390	PSPC1	84	73.414	Homo_sapiens
ENSGACG00000014901	pspc1	95	83.186	ENSAPOG00000015946	pspc1	100	75.429	Acanthochromis_polyacanthus
ENSGACG00000014901	pspc1	92	73.414	ENSAMEG00000017420	PSPC1	88	66.164	Ailuropoda_melanoleuca
ENSGACG00000014901	pspc1	97	75.862	ENSACIG00000018695	pspc1	100	66.475	Amphilophus_citrinellus
ENSGACG00000014901	pspc1	95	83.481	ENSAOCG00000005279	pspc1	100	75.522	Amphiprion_ocellaris
ENSGACG00000014901	pspc1	95	83.481	ENSAPEG00000015927	pspc1	100	75.954	Amphiprion_percula
ENSGACG00000014901	pspc1	94	75.449	ENSATEG00000004878	pspc1	100	63.168	Anabas_testudineus
ENSGACG00000014901	pspc1	75	72.222	ENSAPLG00000006246	PSPC1	99	63.636	Anas_platyrhynchos
ENSGACG00000014901	pspc1	86	68.078	ENSAPLG00000003643	SFPQ	82	53.571	Anas_platyrhynchos
ENSGACG00000014901	pspc1	93	72.156	ENSACAG00000002093	PSPC1	88	64.454	Anolis_carolinensis
ENSGACG00000014901	pspc1	79	63.958	ENSACAG00000013307	-	67	50.339	Anolis_carolinensis
ENSGACG00000014901	pspc1	92	73.414	ENSANAG00000000059	PSPC1	83	71.914	Aotus_nancymaae
ENSGACG00000014901	pspc1	98	73.429	ENSACLG00000027220	pspc1	100	66.092	Astatotilapia_calliptera
ENSGACG00000014901	pspc1	95	73.837	ENSAMXG00000036881	pspc1	88	68.162	Astyanax_mexicanus
ENSGACG00000014901	pspc1	95	71.681	ENSBTAG00000003934	PSPC1	88	65.517	Bos_taurus
ENSGACG00000014901	pspc1	92	73.414	ENSCJAG00000004554	PSPC1	88	65.733	Callithrix_jacchus
ENSGACG00000014901	pspc1	92	73.414	ENSCAFG00020002009	PSPC1	85	72.810	Canis_lupus_dingo
ENSGACG00000014901	pspc1	95	71.681	ENSCHIG00000016708	PSPC1	88	65.517	Capra_hircus
ENSGACG00000014901	pspc1	74	64.552	ENSTSYG00000032882	PSPC1	88	57.673	Carlito_syrichta
ENSGACG00000014901	pspc1	93	73.433	ENSCPOG00000000395	PSPC1	85	73.414	Cavia_porcellus
ENSGACG00000014901	pspc1	92	73.414	ENSCCAG00000033498	PSPC1	88	65.948	Cebus_capucinus
ENSGACG00000014901	pspc1	92	73.414	ENSCATG00000036434	PSPC1	90	74.074	Cercocebus_atys
ENSGACG00000014901	pspc1	74	73.962	ENSCLAG00000005241	PSPC1	89	64.677	Chinchilla_lanigera
ENSGACG00000014901	pspc1	91	74.074	ENSCHOG00000008913	PSPC1	88	62.635	Choloepus_hoffmanni
ENSGACG00000014901	pspc1	94	71.429	ENSCPBG00000020859	PSPC1	88	64.946	Chrysemys_picta_bellii
ENSGACG00000014901	pspc1	80	54.861	ENSCSAVG00000003533	-	53	55.755	Ciona_savignyi
ENSGACG00000014901	pspc1	74	74.340	ENSCANG00000018948	PSPC1	88	74.340	Colobus_angolensis_palliatus
ENSGACG00000014901	pspc1	93	72.836	ENSCGRG00001018368	Pspc1	88	65.733	Cricetulus_griseus_chok1gshd
ENSGACG00000014901	pspc1	93	72.836	ENSCGRG00000011724	Pspc1	88	65.733	Cricetulus_griseus_crigri
ENSGACG00000014901	pspc1	94	77.679	ENSCVAG00000007679	-	100	70.385	Cyprinodon_variegatus
ENSGACG00000014901	pspc1	92	73.860	ENSDARG00000006621	pspc1	100	64.516	Danio_rerio
ENSGACG00000014901	pspc1	92	73.394	ENSDNOG00000011078	PSPC1	88	65.733	Dasypus_novemcinctus
ENSGACG00000014901	pspc1	92	69.113	ENSDORG00000016050	Pspc1	88	62.716	Dipodomys_ordii
ENSGACG00000014901	pspc1	55	73.267	ENSETEG00000000502	-	75	73.267	Echinops_telfairi
ENSGACG00000014901	pspc1	87	66.881	ENSEBUG00000003964	-	62	63.478	Eptatretus_burgeri
ENSGACG00000014901	pspc1	82	43.711	ENSEBUG00000010133	pspc1	74	46.099	Eptatretus_burgeri
ENSGACG00000014901	pspc1	93	73.414	ENSEASG00005000119	PSPC1	85	73.414	Equus_asinus_asinus
ENSGACG00000014901	pspc1	93	73.414	ENSECAG00000017286	PSPC1	85	73.414	Equus_caballus
ENSGACG00000014901	pspc1	73	65.000	ENSEEUG00000011288	-	51	65.000	Erinaceus_europaeus
ENSGACG00000014901	pspc1	98	73.143	ENSELUG00000003746	pspc1	100	63.636	Esox_lucius
ENSGACG00000014901	pspc1	92	73.414	ENSFCAG00000027841	PSPC1	85	72.810	Felis_catus
ENSGACG00000014901	pspc1	95	71.681	ENSFALG00000008750	PSPC1	87	64.946	Ficedula_albicollis
ENSGACG00000014901	pspc1	97	70.455	ENSFDAG00000002617	PSPC1	90	65.733	Fukomys_damarensis
ENSGACG00000014901	pspc1	99	61.776	ENSGMOG00000015074	pspc1	100	62.330	Gadus_morhua
ENSGACG00000014901	pspc1	92	72.561	ENSGALG00000017142	PSPC1	88	64.946	Gallus_gallus
ENSGACG00000014901	pspc1	98	78.125	ENSGAFG00000006327	pspc1	81	74.430	Gambusia_affinis
ENSGACG00000014901	pspc1	90	66.049	ENSGAGG00000017325	-	67	53.139	Gopherus_agassizii
ENSGACG00000014901	pspc1	94	71.429	ENSGAGG00000019164	PSPC1	88	64.946	Gopherus_agassizii
ENSGACG00000014901	pspc1	93	73.433	ENSGGOG00000003414	PSPC1	84	73.414	Gorilla_gorilla
ENSGACG00000014901	pspc1	98	81.197	ENSHBUG00000001139	pspc1	100	75.337	Haplochromis_burtoni
ENSGACG00000014901	pspc1	92	73.414	ENSHGLG00000018811	PSPC1	88	65.733	Heterocephalus_glaber_female
ENSGACG00000014901	pspc1	85	72.222	ENSHGLG00100007962	PSPC1	87	74.825	Heterocephalus_glaber_male
ENSGACG00000014901	pspc1	98	76.204	ENSHCOG00000013251	pspc1	99	69.507	Hippocampus_comes
ENSGACG00000014901	pspc1	95	76.627	ENSIPUG00000013192	pspc1	100	62.949	Ictalurus_punctatus
ENSGACG00000014901	pspc1	98	70.655	ENSSTOG00000026833	PSPC1	84	73.112	Ictidomys_tridecemlineatus
ENSGACG00000014901	pspc1	92	73.089	ENSJJAG00000018334	Pspc1	88	65.517	Jaculus_jaculus
ENSGACG00000014901	pspc1	99	57.447	ENSKMAG00000013525	-	99	65.352	Kryptolebias_marmoratus
ENSGACG00000014901	pspc1	99	81.818	ENSLBEG00000004474	pspc1	100	71.402	Labrus_bergylta
ENSGACG00000014901	pspc1	99	57.356	ENSLACG00000010762	PSPC1	88	64.086	Latimeria_chalumnae
ENSGACG00000014901	pspc1	92	76.829	ENSLOCG00000010832	pspc1	99	62.360	Lepisosteus_oculatus
ENSGACG00000014901	pspc1	92	73.414	ENSLAFG00000010968	PSPC1	88	65.948	Loxodonta_africana
ENSGACG00000014901	pspc1	92	73.394	ENSMFAG00000032728	PSPC1	91	73.846	Macaca_fascicularis
ENSGACG00000014901	pspc1	92	73.700	ENSMMUG00000020262	PSPC1	88	74.074	Macaca_mulatta
ENSGACG00000014901	pspc1	92	73.394	ENSMNEG00000027401	PSPC1	85	70.250	Macaca_nemestrina
ENSGACG00000014901	pspc1	74	73.962	ENSMLEG00000039043	PSPC1	94	64.925	Mandrillus_leucophaeus
ENSGACG00000014901	pspc1	94	81.306	ENSMAMG00000004333	pspc1	100	72.608	Mastacembelus_armatus
ENSGACG00000014901	pspc1	98	73.429	ENSMZEG00005005726	pspc1	100	66.092	Maylandia_zebra
ENSGACG00000014901	pspc1	76	72.059	ENSMGAG00000015134	PSPC1	99	63.570	Meleagris_gallopavo
ENSGACG00000014901	pspc1	93	66.269	ENSMAUG00000021067	Pspc1	86	61.823	Mesocricetus_auratus
ENSGACG00000014901	pspc1	93	73.433	ENSMICG00000013970	PSPC1	85	73.414	Microcebus_murinus
ENSGACG00000014901	pspc1	92	73.394	ENSMOCG00000006060	Pspc1	88	65.302	Microtus_ochrogaster
ENSGACG00000014901	pspc1	98	59.659	ENSMMOG00000004352	pspc1	59	58.912	Mola_mola
ENSGACG00000014901	pspc1	92	73.414	ENSMODG00000008029	PSPC1	66	69.756	Monodelphis_domestica
ENSGACG00000014901	pspc1	99	75.097	ENSMALG00000008914	pspc1	100	74.903	Monopterus_albus
ENSGACG00000014901	pspc1	92	73.171	MGP_CAROLIEiJ_G0019341	Pspc1	86	69.307	Mus_caroli
ENSGACG00000014901	pspc1	92	73.171	ENSMUSG00000021938	Pspc1	86	69.307	Mus_musculus
ENSGACG00000014901	pspc1	92	73.171	MGP_PahariEiJ_G0030359	Pspc1	86	69.307	Mus_pahari
ENSGACG00000014901	pspc1	92	73.171	MGP_SPRETEiJ_G0020232	Pspc1	86	69.307	Mus_spretus
ENSGACG00000014901	pspc1	92	73.414	ENSMPUG00000013347	PSPC1	88	66.164	Mustela_putorius_furo
ENSGACG00000014901	pspc1	92	72.424	ENSMLUG00000017663	PSPC1	88	65.310	Myotis_lucifugus
ENSGACG00000014901	pspc1	92	73.414	ENSNGAG00000011271	Pspc1	88	65.517	Nannospalax_galili
ENSGACG00000014901	pspc1	97	75.000	ENSNBRG00000014059	pspc1	92	69.018	Neolamprologus_brichardi
ENSGACG00000014901	pspc1	92	73.414	ENSNLEG00000001294	PSPC1	88	65.948	Nomascus_leucogenys
ENSGACG00000014901	pspc1	58	70.103	ENSMEUG00000000476	PSPC1	72	70.103	Notamacropus_eugenii
ENSGACG00000014901	pspc1	92	66.163	ENSODEG00000019012	-	88	60.645	Octodon_degus
ENSGACG00000014901	pspc1	92	60.121	ENSODEG00000007817	-	88	54.468	Octodon_degus
ENSGACG00000014901	pspc1	98	82.336	ENSONIG00000012010	pspc1	100	76.583	Oreochromis_niloticus
ENSGACG00000014901	pspc1	74	73.585	ENSOANG00000009017	-	99	63.930	Ornithorhynchus_anatinus
ENSGACG00000014901	pspc1	92	58.359	ENSOANG00000011381	-	91	51.416	Ornithorhynchus_anatinus
ENSGACG00000014901	pspc1	92	73.414	ENSOCUG00000006153	PSPC1	88	65.733	Oryctolagus_cuniculus
ENSGACG00000014901	pspc1	94	79.104	ENSORLG00000004232	-	100	67.121	Oryzias_latipes
ENSGACG00000014901	pspc1	94	80.299	ENSORLG00020000578	PSPC1	100	67.899	Oryzias_latipes_hni
ENSGACG00000014901	pspc1	94	79.403	ENSORLG00015017480	pspc1	100	67.510	Oryzias_latipes_hsok
ENSGACG00000014901	pspc1	59	82.857	ENSOMEG00000003779	pspc1	95	82.609	Oryzias_melastigma
ENSGACG00000014901	pspc1	92	73.414	ENSOGAG00000012643	PSPC1	88	65.948	Otolemur_garnettii
ENSGACG00000014901	pspc1	90	72.923	ENSOARG00000014163	PSPC1	94	65.152	Ovis_aries
ENSGACG00000014901	pspc1	93	73.273	ENSPPAG00000009836	PSPC1	92	74.074	Pan_paniscus
ENSGACG00000014901	pspc1	92	73.414	ENSPPRG00000008833	PSPC1	88	65.948	Panthera_pardus
ENSGACG00000014901	pspc1	74	73.585	ENSPTIG00000016917	PSPC1	84	64.925	Panthera_tigris_altaica
ENSGACG00000014901	pspc1	93	73.433	ENSPTRG00000005677	PSPC1	84	73.414	Pan_troglodytes
ENSGACG00000014901	pspc1	92	73.860	ENSPANG00000001992	PSPC1	89	73.846	Papio_anubis
ENSGACG00000014901	pspc1	92	78.354	ENSPKIG00000003578	pspc1	89	69.379	Paramormyrops_kingsleyae
ENSGACG00000014901	pspc1	94	70.294	ENSPSIG00000005168	PSPC1	88	64.731	Pelodiscus_sinensis
ENSGACG00000014901	pspc1	87	74.920	ENSPMGG00000015135	pspc1	98	66.947	Periophthalmus_magnuspinnatus
ENSGACG00000014901	pspc1	92	73.414	ENSPEMG00000015214	Pspc1	88	65.517	Peromyscus_maniculatus_bairdii
ENSGACG00000014901	pspc1	73	42.697	ENSPMAG00000004618	pspc1	81	42.697	Petromyzon_marinus
ENSGACG00000014901	pspc1	92	73.414	ENSPCIG00000017680	PSPC1	88	65.733	Phascolarctos_cinereus
ENSGACG00000014901	pspc1	99	77.654	ENSPFOG00000003362	pspc1	100	73.981	Poecilia_formosa
ENSGACG00000014901	pspc1	99	77.654	ENSPLAG00000011540	pspc1	100	74.038	Poecilia_latipinna
ENSGACG00000014901	pspc1	99	77.654	ENSPMEG00000008322	pspc1	100	74.038	Poecilia_mexicana
ENSGACG00000014901	pspc1	99	77.374	ENSPREG00000007786	pspc1	100	73.654	Poecilia_reticulata
ENSGACG00000014901	pspc1	92	73.414	ENSPPYG00000005186	PSPC1	85	69.975	Pongo_abelii
ENSGACG00000014901	pspc1	91	74.085	ENSPCOG00000014364	PSPC1	87	62.500	Propithecus_coquereli
ENSGACG00000014901	pspc1	92	73.089	ENSPVAG00000005036	PSPC1	89	64.655	Pteropus_vampyrus
ENSGACG00000014901	pspc1	98	73.714	ENSPNYG00000008893	pspc1	100	66.475	Pundamilia_nyererei
ENSGACG00000014901	pspc1	93	78.313	ENSPNAG00000016511	pspc1	100	64.432	Pygocentrus_nattereri
ENSGACG00000014901	pspc1	92	73.414	ENSRNOG00000020782	Pspc1	86	69.479	Rattus_norvegicus
ENSGACG00000014901	pspc1	99	70.455	ENSRBIG00000036057	PSPC1	93	73.414	Rhinopithecus_bieti
ENSGACG00000014901	pspc1	93	73.433	ENSRROG00000036334	PSPC1	84	73.414	Rhinopithecus_roxellana
ENSGACG00000014901	pspc1	85	66.997	ENSSBOG00000028172	PSPC1	89	73.063	Saimiri_boliviensis_boliviensis
ENSGACG00000014901	pspc1	92	66.366	ENSSHAG00000004696	PSPC1	88	60.730	Sarcophilus_harrisii
ENSGACG00000014901	pspc1	92	78.354	ENSSFOG00015001395	pspc1	99	69.017	Scleropages_formosus
ENSGACG00000014901	pspc1	99	77.562	ENSSMAG00000001761	pspc1	100	70.888	Scophthalmus_maximus
ENSGACG00000014901	pspc1	92	85.976	ENSSDUG00000010651	pspc1	100	74.815	Seriola_dumerili
ENSGACG00000014901	pspc1	92	78.182	ENSSLDG00000004284	pspc1	100	67.510	Seriola_lalandi_dorsalis
ENSGACG00000014901	pspc1	92	65.443	ENSSARG00000000888	PSPC1	88	59.827	Sorex_araneus
ENSGACG00000014901	pspc1	86	58.958	ENSSPUG00000001136	-	64	46.925	Sphenodon_punctatus
ENSGACG00000014901	pspc1	96	61.960	ENSSPUG00000008550	PSPC1	87	54.721	Sphenodon_punctatus
ENSGACG00000014901	pspc1	98	79.564	ENSSPAG00000001921	pspc1	100	74.672	Stegastes_partitus
ENSGACG00000014901	pspc1	92	73.089	ENSSSCG00000009569	PSPC1	84	73.765	Sus_scrofa
ENSGACG00000014901	pspc1	92	72.561	ENSTGUG00000011295	PSPC1	99	64.946	Taeniopygia_guttata
ENSGACG00000014901	pspc1	99	75.493	ENSTRUG00000011335	pspc1	100	68.208	Takifugu_rubripes
ENSGACG00000014901	pspc1	99	72.941	ENSTNIG00000010358	pspc1	100	72.745	Tetraodon_nigroviridis
ENSGACG00000014901	pspc1	91	66.564	ENSTBEG00000002361	PSPC1	88	56.858	Tupaia_belangeri
ENSGACG00000014901	pspc1	98	70.201	ENSTTRG00000003343	PSPC1	89	65.733	Tursiops_truncatus
ENSGACG00000014901	pspc1	82	74.403	ENSUAMG00000012309	PSPC1	82	74.825	Ursus_americanus
ENSGACG00000014901	pspc1	92	73.112	ENSUMAG00000013993	PSPC1	93	72.508	Ursus_maritimus
ENSGACG00000014901	pspc1	74	73.962	ENSVPAG00000010029	PSPC1	99	64.677	Vicugna_pacos
ENSGACG00000014901	pspc1	92	73.414	ENSVVUG00000006414	PSPC1	84	74.074	Vulpes_vulpes
ENSGACG00000014901	pspc1	98	77.841	ENSXCOG00000017438	pspc1	93	72.658	Xiphophorus_couchianus
ENSGACG00000014901	pspc1	98	78.125	ENSXMAG00000007929	pspc1	93	72.911	Xiphophorus_maculatus