EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000014925 (Gene tree)
Gene ID: -
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 15822 bases
Position: chrgroupI:23258559-23274380
Accession: ZDB-GENE-030131-7119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000019692	R3H	PF01424.22	1.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000019730	-	3054	-	ENSGACP00000019692	1018 (aa)	-	G3PQ07

Gene Model

Click here to download ENSGACG00000014925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000014925's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000014925	r3hdm1	99	38.154	ENSGACG00000006442	r3hdm2	91	38.752

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000014925	r3hdm1	92	68.269	ENSG00000048991	R3HDM1	86	68.269	Homo_sapiens
ENSGACG00000014925	r3hdm1	96	83.434	ENSAPOG00000020850	r3hdm1	92	83.557	Acanthochromis_polyacanthus
ENSGACG00000014925	r3hdm1	99	47.238	ENSAMEG00000014886	R3HDM1	87	47.727	Ailuropoda_melanoleuca
ENSGACG00000014925	r3hdm1	95	82.312	ENSAOCG00000005192	r3hdm1	94	82.814	Amphiprion_ocellaris
ENSGACG00000014925	r3hdm1	92	81.321	ENSAPEG00000016108	r3hdm1	95	81.940	Amphiprion_percula
ENSGACG00000014925	r3hdm1	92	80.685	ENSATEG00000000232	r3hdm1	95	80.789	Anabas_testudineus
ENSGACG00000014925	r3hdm1	99	47.449	ENSAPLG00000015231	R3HDM1	86	47.555	Anas_platyrhynchos
ENSGACG00000014925	r3hdm1	99	48.716	ENSACAG00000001676	R3HDM1	87	49.808	Anolis_carolinensis
ENSGACG00000014925	r3hdm1	99	47.177	ENSANAG00000035334	R3HDM1	86	68.269	Aotus_nancymaae
ENSGACG00000014925	r3hdm1	92	78.102	ENSACLG00000027282	r3hdm1	95	78.333	Astatotilapia_calliptera
ENSGACG00000014925	r3hdm1	91	70.520	ENSAMXG00000012861	R3HDM1	86	69.653	Astyanax_mexicanus
ENSGACG00000014925	r3hdm1	96	68.347	ENSAMXG00000003536	r3hdm1	85	69.741	Astyanax_mexicanus
ENSGACG00000014925	r3hdm1	99	49.762	ENSBTAG00000013302	R3HDM1	87	49.390	Bos_taurus
ENSGACG00000014925	r3hdm1	92	68.269	ENSCJAG00000011718	R3HDM1	86	68.269	Callithrix_jacchus
ENSGACG00000014925	r3hdm1	99	47.738	ENSCAFG00000005075	R3HDM1	87	47.502	Canis_familiaris
ENSGACG00000014925	r3hdm1	99	49.663	ENSCAFG00020016119	R3HDM1	80	63.576	Canis_lupus_dingo
ENSGACG00000014925	r3hdm1	99	49.476	ENSCHIG00000020851	R3HDM1	87	49.623	Capra_hircus
ENSGACG00000014925	r3hdm1	99	48.989	ENSCPOG00000012784	R3HDM1	79	69.068	Cavia_porcellus
ENSGACG00000014925	r3hdm1	92	67.949	ENSCCAG00000027199	R3HDM1	86	67.949	Cebus_capucinus
ENSGACG00000014925	r3hdm1	92	67.949	ENSCATG00000023642	R3HDM1	86	67.949	Cercocebus_atys
ENSGACG00000014925	r3hdm1	99	49.141	ENSCLAG00000007962	R3HDM1	80	72.458	Chinchilla_lanigera
ENSGACG00000014925	r3hdm1	99	48.711	ENSCSAG00000016356	R3HDM1	87	49.051	Chlorocebus_sabaeus
ENSGACG00000014925	r3hdm1	83	65.649	ENSCHOG00000013638	R3HDM1	74	65.649	Choloepus_hoffmanni
ENSGACG00000014925	r3hdm1	96	47.059	ENSCPBG00000009645	R3HDM1	91	69.784	Chrysemys_picta_bellii
ENSGACG00000014925	r3hdm1	80	68.269	ENSCANG00000034748	R3HDM1	86	68.269	Colobus_angolensis_palliatus
ENSGACG00000014925	r3hdm1	99	48.424	ENSCGRG00001012357	R3hdm1	85	48.250	Cricetulus_griseus_chok1gshd
ENSGACG00000014925	r3hdm1	99	48.424	ENSCGRG00000012080	R3hdm1	80	72.034	Cricetulus_griseus_crigri
ENSGACG00000014925	r3hdm1	95	68.000	ENSCSEG00000008944	r3hdm1	95	69.285	Cynoglossus_semilaevis
ENSGACG00000014925	r3hdm1	95	78.150	ENSCVAG00000007582	r3hdm1	95	78.010	Cyprinodon_variegatus
ENSGACG00000014925	r3hdm1	99	45.360	ENSDNOG00000000771	R3HDM1	87	46.139	Dasypus_novemcinctus
ENSGACG00000014925	r3hdm1	76	62.791	ENSETEG00000013606	R3HDM1	70	62.615	Echinops_telfairi
ENSGACG00000014925	r3hdm1	94	66.569	ENSEASG00005007392	R3HDM1	86	66.379	Equus_asinus_asinus
ENSGACG00000014925	r3hdm1	94	66.569	ENSECAG00000019114	R3HDM1	86	66.379	Equus_caballus
ENSGACG00000014925	r3hdm1	62	58.278	ENSEEUG00000012589	R3HDM1	57	57.616	Erinaceus_europaeus
ENSGACG00000014925	r3hdm1	93	50.152	ENSELUG00000014413	r3hdm1	87	49.501	Esox_lucius
ENSGACG00000014925	r3hdm1	96	52.067	ENSELUG00000004909	R3HDM1	92	48.099	Esox_lucius
ENSGACG00000014925	r3hdm1	94	66.569	ENSFCAG00000027113	R3HDM1	86	66.379	Felis_catus
ENSGACG00000014925	r3hdm1	79	52.317	ENSFALG00000013731	R3HDM1	88	45.578	Ficedula_albicollis
ENSGACG00000014925	r3hdm1	99	48.999	ENSFDAG00000016478	R3HDM1	80	72.458	Fukomys_damarensis
ENSGACG00000014925	r3hdm1	95	78.002	ENSFHEG00000018713	r3hdm1	94	78.002	Fundulus_heteroclitus
ENSGACG00000014925	r3hdm1	72	63.762	ENSGMOG00000006042	-	82	61.331	Gadus_morhua
ENSGACG00000014925	r3hdm1	79	65.049	ENSGALG00000012246	R3HDM1	90	64.401	Gallus_gallus
ENSGACG00000014925	r3hdm1	92	72.860	ENSGAFG00000006203	r3hdm1	95	73.646	Gambusia_affinis
ENSGACG00000014925	r3hdm1	94	65.143	ENSGAGG00000007840	R3HDM1	83	65.143	Gopherus_agassizii
ENSGACG00000014925	r3hdm1	92	68.269	ENSGGOG00000008156	R3HDM1	86	68.269	Gorilla_gorilla
ENSGACG00000014925	r3hdm1	99	49.191	ENSHGLG00000015718	R3HDM1	80	72.458	Heterocephalus_glaber_female
ENSGACG00000014925	r3hdm1	99	49.001	ENSHGLG00100003184	-	80	72.458	Heterocephalus_glaber_male
ENSGACG00000014925	r3hdm1	93	39.750	ENSHGLG00100015374	-	89	39.938	Heterocephalus_glaber_male
ENSGACG00000014925	r3hdm1	93	68.058	ENSHCOG00000013366	r3hdm1	95	67.954	Hippocampus_comes
ENSGACG00000014925	r3hdm1	87	67.778	ENSIPUG00000001676	R3HDM1	93	68.195	Ictalurus_punctatus
ENSGACG00000014925	r3hdm1	96	47.676	ENSIPUG00000013629	r3hdm1	86	68.506	Ictalurus_punctatus
ENSGACG00000014925	r3hdm1	99	48.664	ENSSTOG00000007572	R3HDM1	80	72.034	Ictidomys_tridecemlineatus
ENSGACG00000014925	r3hdm1	99	52.111	ENSLACG00000005334	R3HDM1	91	51.727	Latimeria_chalumnae
ENSGACG00000014925	r3hdm1	99	51.635	ENSLOCG00000001641	r3hdm1	87	51.625	Lepisosteus_oculatus
ENSGACG00000014925	r3hdm1	99	49.620	ENSLAFG00000009065	R3HDM1	90	66.189	Loxodonta_africana
ENSGACG00000014925	r3hdm1	94	67.155	ENSMFAG00000030331	R3HDM1	86	68.269	Macaca_fascicularis
ENSGACG00000014925	r3hdm1	92	68.269	ENSMMUG00000009844	R3HDM1	86	68.269	Macaca_mulatta
ENSGACG00000014925	r3hdm1	94	67.155	ENSMNEG00000027793	R3HDM1	86	68.269	Macaca_nemestrina
ENSGACG00000014925	r3hdm1	92	68.269	ENSMLEG00000043189	R3HDM1	86	68.269	Mandrillus_leucophaeus
ENSGACG00000014925	r3hdm1	95	82.276	ENSMAMG00000004532	r3hdm1	95	82.175	Mastacembelus_armatus
ENSGACG00000014925	r3hdm1	95	80.986	ENSMZEG00005003157	r3hdm1	95	81.508	Maylandia_zebra
ENSGACG00000014925	r3hdm1	92	62.472	ENSMGAG00000012461	R3HDM1	86	47.019	Meleagris_gallopavo
ENSGACG00000014925	r3hdm1	99	48.667	ENSMAUG00000010315	R3hdm1	80	72.034	Mesocricetus_auratus
ENSGACG00000014925	r3hdm1	91	67.949	ENSMICG00000042655	-	90	67.949	Microcebus_murinus
ENSGACG00000014925	r3hdm1	92	68.269	ENSMICG00000005900	-	86	68.269	Microcebus_murinus
ENSGACG00000014925	r3hdm1	96	48.120	ENSMODG00000000923	R3HDM1	90	48.259	Monodelphis_domestica
ENSGACG00000014925	r3hdm1	99	79.556	ENSMALG00000009000	r3hdm1	90	79.364	Monopterus_albus
ENSGACG00000014925	r3hdm1	99	48.187	MGP_CAROLIEiJ_G0014543	R3hdm1	80	72.034	Mus_caroli
ENSGACG00000014925	r3hdm1	99	48.282	ENSMUSG00000056211	R3hdm1	80	72.034	Mus_musculus
ENSGACG00000014925	r3hdm1	99	47.901	MGP_PahariEiJ_G0027779	R3hdm1	80	72.034	Mus_pahari
ENSGACG00000014925	r3hdm1	99	48.282	MGP_SPRETEiJ_G0015350	R3hdm1	80	72.034	Mus_spretus
ENSGACG00000014925	r3hdm1	99	47.669	ENSMPUG00000002412	R3HDM1	87	47.913	Mustela_putorius_furo
ENSGACG00000014925	r3hdm1	99	47.469	ENSMLUG00000013824	R3HDM1	86	48.233	Myotis_lucifugus
ENSGACG00000014925	r3hdm1	92	68.269	ENSNLEG00000008622	R3HDM1	86	68.269	Nomascus_leucogenys
ENSGACG00000014925	r3hdm1	89	43.027	ENSMEUG00000011784	R3HDM1	85	44.078	Notamacropus_eugenii
ENSGACG00000014925	r3hdm1	99	48.942	ENSODEG00000008607	R3HDM1	80	72.881	Octodon_degus
ENSGACG00000014925	r3hdm1	99	75.992	ENSONIG00000012017	r3hdm1	93	75.898	Oreochromis_niloticus
ENSGACG00000014925	r3hdm1	99	46.259	ENSOANG00000007987	R3HDM1	86	47.161	Ornithorhynchus_anatinus
ENSGACG00000014925	r3hdm1	95	47.908	ENSOCUG00000017366	R3HDM1	91	48.090	Oryctolagus_cuniculus
ENSGACG00000014925	r3hdm1	95	72.553	ENSORLG00000004297	r3hdm1	95	72.883	Oryzias_latipes
ENSGACG00000014925	r3hdm1	95	72.581	ENSORLG00015017355	r3hdm1	95	72.910	Oryzias_latipes_hsok
ENSGACG00000014925	r3hdm1	99	47.429	ENSOGAG00000003136	R3HDM1	87	47.818	Otolemur_garnettii
ENSGACG00000014925	r3hdm1	99	47.664	ENSOARG00000010788	R3HDM1	87	48.618	Ovis_aries
ENSGACG00000014925	r3hdm1	92	68.269	ENSPPAG00000027858	R3HDM1	86	68.269	Pan_paniscus
ENSGACG00000014925	r3hdm1	92	67.949	ENSPPRG00000002626	R3HDM1	86	67.949	Panthera_pardus
ENSGACG00000014925	r3hdm1	92	67.949	ENSPTIG00000016581	R3HDM1	86	67.949	Panthera_tigris_altaica
ENSGACG00000014925	r3hdm1	92	68.269	ENSPTRG00000012494	R3HDM1	86	68.269	Pan_troglodytes
ENSGACG00000014925	r3hdm1	92	68.269	ENSPANG00000026448	R3HDM1	86	68.269	Papio_anubis
ENSGACG00000014925	r3hdm1	91	69.767	ENSPKIG00000004328	r3hdm1	82	71.242	Paramormyrops_kingsleyae
ENSGACG00000014925	r3hdm1	99	46.974	ENSPSIG00000012915	R3HDM1	86	46.794	Pelodiscus_sinensis
ENSGACG00000014925	r3hdm1	99	48.381	ENSPEMG00000015187	R3hdm1	80	72.034	Peromyscus_maniculatus_bairdii
ENSGACG00000014925	r3hdm1	99	48.769	ENSPCIG00000002491	R3HDM1	88	49.569	Phascolarctos_cinereus
ENSGACG00000014925	r3hdm1	95	76.993	ENSPFOG00000015036	r3hdm1	94	76.761	Poecilia_formosa
ENSGACG00000014925	r3hdm1	92	73.591	ENSPLAG00000018042	r3hdm1	95	73.278	Poecilia_latipinna
ENSGACG00000014925	r3hdm1	92	73.306	ENSPMEG00000023947	r3hdm1	95	72.993	Poecilia_mexicana
ENSGACG00000014925	r3hdm1	95	76.566	ENSPREG00000007902	r3hdm1	94	79.869	Poecilia_reticulata
ENSGACG00000014925	r3hdm1	99	46.756	ENSPPYG00000012815	R3HDM1	87	46.981	Pongo_abelii
ENSGACG00000014925	r3hdm1	93	67.181	ENSPCAG00000006208	R3HDM1	75	66.917	Procavia_capensis
ENSGACG00000014925	r3hdm1	92	62.162	ENSPCOG00000012698	R3HDM1	90	62.162	Propithecus_coquereli
ENSGACG00000014925	r3hdm1	99	42.308	ENSPVAG00000006098	R3HDM1	87	41.942	Pteropus_vampyrus
ENSGACG00000014925	r3hdm1	78	70.227	ENSPNAG00000005436	R3HDM1	92	69.256	Pygocentrus_nattereri
ENSGACG00000014925	r3hdm1	54	37.937	ENSPNAG00000004162	arpp21	59	50.195	Pygocentrus_nattereri
ENSGACG00000014925	r3hdm1	95	70.349	ENSPNAG00000013952	r3hdm1	85	70.349	Pygocentrus_nattereri
ENSGACG00000014925	r3hdm1	99	48.654	ENSRNOG00000004099	R3hdm1	87	49.044	Rattus_norvegicus
ENSGACG00000014925	r3hdm1	88	71.223	ENSRBIG00000033317	R3HDM1	92	71.223	Rhinopithecus_bieti
ENSGACG00000014925	r3hdm1	92	68.269	ENSRROG00000034534	R3HDM1	86	68.269	Rhinopithecus_roxellana
ENSGACG00000014925	r3hdm1	92	68.269	ENSSBOG00000020389	R3HDM1	86	68.269	Saimiri_boliviensis_boliviensis
ENSGACG00000014925	r3hdm1	99	46.935	ENSSHAG00000016999	R3HDM1	86	47.610	Sarcophilus_harrisii
ENSGACG00000014925	r3hdm1	99	48.636	ENSSFOG00015019851	-	92	61.053	Scleropages_formosus
ENSGACG00000014925	r3hdm1	96	71.221	ENSSFOG00015014134	r3hdm1	86	70.349	Scleropages_formosus
ENSGACG00000014925	r3hdm1	99	76.393	ENSSMAG00000001669	r3hdm1	90	76.199	Scophthalmus_maximus
ENSGACG00000014925	r3hdm1	95	78.507	ENSSDUG00000010749	r3hdm1	95	78.607	Seriola_dumerili
ENSGACG00000014925	r3hdm1	100	79.426	ENSSLDG00000004499	r3hdm1	89	79.426	Seriola_lalandi_dorsalis
ENSGACG00000014925	r3hdm1	99	47.150	ENSSPUG00000004167	R3HDM1	86	47.348	Sphenodon_punctatus
ENSGACG00000014925	r3hdm1	95	79.620	ENSSPAG00000004648	r3hdm1	95	79.820	Stegastes_partitus
ENSGACG00000014925	r3hdm1	92	64.725	ENSSSCG00000015692	R3HDM1	86	64.725	Sus_scrofa
ENSGACG00000014925	r3hdm1	99	46.756	ENSTGUG00000011750	R3HDM1	86	47.323	Taeniopygia_guttata
ENSGACG00000014925	r3hdm1	92	76.367	ENSTRUG00000011654	r3hdm1	94	76.367	Takifugu_rubripes
ENSGACG00000014925	r3hdm1	96	69.169	ENSTNIG00000010362	r3hdm1	95	69.269	Tetraodon_nigroviridis
ENSGACG00000014925	r3hdm1	91	49.580	ENSTTRG00000003935	R3HDM1	79	49.823	Tursiops_truncatus
ENSGACG00000014925	r3hdm1	66	68.910	ENSUAMG00000024806	R3HDM1	84	67.949	Ursus_americanus
ENSGACG00000014925	r3hdm1	92	67.949	ENSUMAG00000005552	R3HDM1	86	67.949	Ursus_maritimus
ENSGACG00000014925	r3hdm1	94	45.610	ENSVPAG00000007333	R3HDM1	81	45.612	Vicugna_pacos
ENSGACG00000014925	r3hdm1	92	67.949	ENSVVUG00000006457	R3HDM1	86	67.949	Vulpes_vulpes
ENSGACG00000014925	r3hdm1	92	45.473	ENSXETG00000019330	r3hdm1	92	43.948	Xenopus_tropicalis
ENSGACG00000014925	r3hdm1	76	68.314	ENSXCOG00000017448	r3hdm1	93	68.434	Xiphophorus_couchianus
ENSGACG00000014925	r3hdm1	95	75.810	ENSXMAG00000007885	r3hdm1	95	76.287	Xiphophorus_maculatus