EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000015154 (Gene tree)
Gene ID: -
Gene Symbol: prpf38b
Alias: wu:fc43b05|zgc:63496
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 4718 bases
Position: chrgroupIII:7034141-7038858
Accession: ZDB-GENE-040426-2878
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000019987	PRP38	PF03371.15	3.9e-54	1	1
ENSGACP00000019986	PRP38	PF03371.15	5.1e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000020025	-	1445	-	ENSGACP00000019987	413 (aa)	-	G3PQV2
ENSGACT00000020024	-	2336	-	ENSGACP00000019986	470 (aa)	-	G3PQV1

Gene Model

Click here to download ENSGACG00000015154's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000015154's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000015154	prpf38b	70	92.388	ENSAPOG00000012791	-	100	83.789	Acanthochromis_polyacanthus
ENSGACG00000015154	prpf38b	70	92.388	ENSAPOG00000005297	prpf38b	100	83.789	Acanthochromis_polyacanthus
ENSGACG00000015154	prpf38b	70	92.042	ENSAOCG00000012675	prpf38b	91	83.579	Amphiprion_ocellaris
ENSGACG00000015154	prpf38b	70	92.388	ENSAPEG00000010974	prpf38b	94	96.951	Amphiprion_percula
ENSGACG00000015154	prpf38b	99	85.439	ENSACLG00000001712	prpf38b	99	83.298	Astatotilapia_calliptera
ENSGACG00000015154	prpf38b	98	69.512	ENSDARG00000053101	prpf38b	95	89.024	Danio_rerio
ENSGACG00000015154	prpf38b	100	76.891	ENSFHEG00000002861	prpf38b	100	79.579	Fundulus_heteroclitus
ENSGACG00000015154	prpf38b	99	83.726	ENSHBUG00000022496	prpf38b	99	83.298	Haplochromis_burtoni
ENSGACG00000015154	prpf38b	94	66.738	ENSIPUG00000014942	prpf38b	94	63.966	Ictalurus_punctatus
ENSGACG00000015154	prpf38b	100	85.474	ENSLBEG00000024500	prpf38b	89	98.171	Labrus_bergylta
ENSGACG00000015154	prpf38b	100	85.744	ENSMAMG00000010641	prpf38b	88	95.783	Mastacembelus_armatus
ENSGACG00000015154	prpf38b	99	85.439	ENSMZEG00005025536	prpf38b	99	83.298	Maylandia_zebra
ENSGACG00000015154	prpf38b	99	83.726	ENSPNYG00000007625	prpf38b	99	83.298	Pundamilia_nyererei
ENSGACG00000015154	prpf38b	100	78.947	ENSSPAG00000023160	-	100	83.368	Stegastes_partitus